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Previous Versions

Previous Versions

Loupe V(D)J Browser 5.2.0 (Sep 3, 2024)

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Loupe V(D)J Browser 5.2.0 highlights

  • Introduces the ability to color clonotypes based on metadata from the Cell Ranger aggr input CSV, allowing for more tailored visualizations
Release notesTutorials

Loupe V(D)J Browser 5.1.0 (Sep 13, 2023)

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Loupe V(D)J Browser 5.1.0 highlights

  • Introduces the ability to visualize (Comparison tab) BEAM (Antigen Capture) libraries aggregated with cellranger aggr.
Release notesTutorials

Loupe V(D)J Browser 5.0.1 (Mar 1, 2023)

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Loupe V(D)J Browser 5.0.1 highlights

  • New and improved user interface for rapid filtering and exploration of V(D)J datasets!
  • Supports BEAM (Antigen Capture) data analysis with new visualization and filtering tools to explore the relationships between clonotypes and antigens. Immune cell clonotypes can now be visualized through the Clonotype Distribution Plot.
  • Updated Sequence view for improved visualization of paired BCR or TCR receptor chains.
  • Enables visualization of receptor nucleotide sequence for variants within a clonotype and their associated antigen specificity score.
  • v5.0.1 fixes critical bug to display the correct consensus sequence under the “Align Contigs to Consensus and Reference” option.
Release notesTutorialsPrevious versions

Loupe V(D)J Browser 4.0.0 (Nov 19, 2020)

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Loupe V(D)J Browser 4.0.0 highlights

  • Loupe V(D)J Browser 4.0 is required to view `.vloupe` files produced by Cell Ranger 5.0+
  • Enables comparison of aggregated samples, including subsetting of the dataset in a single view
  • Import `.cloupe` file to filter data by gene expression based clustering
  • Introduction of filtering for invariant natural killer T (iNKT) cells and mucosal-associated invariant T (MAIT) cells
  • Improved performance on larger datasets
Release notes

Loupe V(D)J Browser 3.0.0 (Nov 19, 2018)

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Loupe V(D)J Browser 3.0.0 highlights

  • Loupe V(D)J Browser 3.0 is required to view .vloupe files produced by Cell Ranger 3.0+
  • Comparison mode enables investigation of clonotypes and gene usage across multiple experiments
  • Improved functionality for exploring B cells
Release notes