Previous Versions
Space Ranger 3.1.1 (Sep 9, 2024)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 827 MBmd5sum: c0b9a274d7d3692e28f086818eb55e62curlwgetcurl -o spaceranger-3.1.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.1.1.tar.gz?Expires=1753214468&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=nt43WRb9lTvnQLwg1-YibSYiuzzRQHqTWCPyz9B-kvqMY1V46kGFEVQPr7L9t3nbAhGNleuAMwjvChpJ4uoU2LgYsnpRoA53Bos3aB276Yyq-5u8wliSSJF26FabgSfsAWtugnDd2mFZdKQLDGvp3unJq2G~uYY946qs7CjrFBaPBH77TkDCc779K20ijMhzg0PidyaLhRg8dzDnILOr1XUFd42XHDhh8OfOmZZjqEdG1CGnCWzFWS67skSexMvSeIzF~R1igAbcxLw7NwpKE4gCB5xklQlsuc45RGGvOwmvQKaNzipC1Yw7Bg282QzcN23CPjS9mxte0Pd8AkLLyA__"
tar.xz compression
Download for Linux 64-bit (tar.xz)File size: 527 MBmd5sum: 4adde78374877cee92d056b903a77759curlwgetcurl -o spaceranger-3.1.1.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.1.1.tar.xz?Expires=1753214468&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=QSBgTSmHAzEXHlOtLEWkzHEMXEdiSXV5mu5IUsBu0Rw34Ruq0ZiIVyLKlMpsP7H-209oCTAhez5k2lpQLjXt3KShSU5MIwLr2hY22phfgMwPJHDY6jrguTceC4WXX2oveRo3~0dFCBTq0DxCQ9xNtom4331dftp-SKjI0Tbj1vPMS3rPPvVzrTedAmK541N1cUKzwTe4u~6p~wXbL637lu-NBoFFYNcHtjLnt~AZ5dVojUQ9TuatkxY1tjI9cKOgH15wJv8segnS5OaruDa8Kjib5L6n-5VBM9VsTZ~~A8PMEJUBfuckWeMW4rytkW37KahxCQfXZuSpG3YfS~imDg__"
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Space Ranger v3.1.1 highlights
- In Space Ranger v3.1.1, the pipeline has been overhauled to significantly improve the CytAssist to microscope image registration process.
Space Ranger 3.1.0 (Aug 28, 2024)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 827 MBmd5sum: 13a2c82adfb1f1efb737e2be121000d1curlwgetcurl -o spaceranger-3.1.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.1.0.tar.gz?Expires=1753214468&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=U7IsuxOtWmVKASpsg1XLLtWUpxlVqteoZ0tDO9h61rbOqq9-CFHWdaLfKgvJ2bUWMTEce0s2TL7A12mjJjs3KQhQI-dbdLEJ-wZcm2CcBPS~Wfv5siyY3DZicDdb6ZVTiqscJh1YW1UJhFGiT3mbAT9TgwNYTEZW6gWlUYFBRdurx2lL~Hpg6aT4pDxXFFKMtjoyanTydWQWLrxEVN7ghtsxfJg8aUqNKMoJlLGZDZcq6WPZg5hoCHshYPJH0tocX7VjXAYlx~gyAN3EwhxRGvxC1w80p~X~h5vD-MCZ56SoYBqgymG-on5IO2JkN5PzTqARmjKlnQtB1mXBWUi0Kw__"
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Download for Linux 64-bit (tar.xz)File size: 527 MBmd5sum: 28010d3724e9effc488470a961fe39fdcurlwgetcurl -o spaceranger-3.1.0.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.1.0.tar.xz?Expires=1753214468&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=kmcv3wf1yilsyp8KRq7iVLY7KDLT5xON8e5z4loaNBsHiqycSASHHKyXbABbYxVrd79f3zkJwy9Utp3a28M3yy28CMV3P4u43kX6fBHVQKhj1K4A3uX7ysJJu4tQahlWiwiQC7Oave7CEGUizsxrzui4xAuK4Y-BJbIid2zxqEjp3rK8LN0p~vKSyCO9dzRZSwyeOb84zsk-q0Pk~iYKpFCl6R5cJmiivkFm86zYArZt8bI9F2PgKNDRTAwNpdM6a6HEgaGQGHSvBVJtwUk2FSnuCMD6LvypuCjaJQaCEG3v5QPRBYEoURKEWadJ1reIefqvBLc-4-FGh2D3CarOEA__"
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Space Ranger 3.1.0 highlights
- In Space Ranger v3.1.0, the pipeline has been overhauled to significantly improve the CytAssist to microscope image registration process.
Space Ranger 3.0.1 (May 31, 2024)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 757 MBmd5sum: ae65e7ffdddbb966277b7d1776f8c63ccurlwgetcurl -o spaceranger-3.0.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.0.1.tar.gz?Expires=1753214468&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=OaHgolq5XZAPeRcZVrtSYjePC-wEWIG53sz8ewuUKsfuXNVGGoByHUyD3rt-sLWHUb6wQIs251FTYEToO3vtCjuHXDvtbc2a7UzpMBZWTjITESwCK65Tf5nP2RN1w0B6om-vcChGZyMxwrEWjCMl4H0C4xYJeXmqz4mdlhrywZz7V2PUakQCoHglb-uoMIjry5TTdbpRG13EkhBE-fLpug7Egf1Fau--a-Jjx5GtwZ93N8ZmGPx3w5ty3FwY~jlfcTmcKPJTPi0ch3ZF07hzEuyeTxliLw-KrZQSNFlZZ4bE8tBQnBAXd4sG01P0~JNwueyWZP04p3YZQxRYh5HF9w__"
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Download for Linux 64-bit (tar.xz)File size: 481 MBmd5sum: 451495ee2074ff9adbac49ff8851ea1bcurlwgetcurl -o spaceranger-3.0.1.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.0.1.tar.xz?Expires=1753214468&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=BEnGdZoLsH6Smjrg8zL7XqtdSCMeS13y8mLpNRlG4xweZZrIl1U0h09tIvZWvMuxrasxm2lb1VqJ9zf4KLAwKeerlR4FYnbvtyxbnAtBKccOqPrPQia9oAO6waO6iIVPtZOXhIdTBAsWWjpFG0xvT~GtBUI8KVznS9DauMZPeYMHlnelRw~GG4F66rR8PzHHrpP8QtOt7UUd6mZkwGBeUEbzMInmenSaQWW~QGuwiwC2Nvb6ToZiOLXX8dp4HsJN5HILfFRo8QCED7hZeUVZ7FBkXEHRuE6lTHtZOFqHNU-5yyK4sn9CixfkJG-tRES631MPWW8-Lsiu69DVUYsC3g__"
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Space Ranger 3.0.1 highlights
- Space Ranger v3.0 now supports Visium HD!
- Space Ranger v3.0.1 includes bug fixes and other improvements.
Space Ranger 3.0.0 (Mar 25, 2024)
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Download for Linux 64-bit (tar.gz)File size: 795 MBmd5sum: 19f4443f10cf94aff5768bd8968cb214curlwgetcurl -o spaceranger-3.0.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.0.0.tar.gz?Expires=1753214468&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Pa22k2tkkH0alUE9IgdCYBZUZyHY~QdH6E21H8EHvrLXEMCsH~1ZR4aUMnfcvJD2m1338cB5x3iR1kTgGS8O2NS1qlzABVfPFEcArufvg6MGi0eMM8DAnm0eehKfJNdjXlbaXLqawNrgJFfeEiOURZg8w6Iz-PRZ4caYVbKKMLUmLZgVEofb-oCjejDG409zhhS9z~wxn~ebh8mTXyyI7CSEkO-6Z-fmBtZinGtyWvefWTwmCkHuKnb5SYHT7p55Ldat8RaLWMTCYYeXSeJNaX1Gg-T~jyKiC-lLpKkZJFuDXtIs6amY8bSOzFgqlQayMGJc2k96wzvI-jcF7lxZHg__"
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Download for Linux 64-bit (tar.xz)File size: 507 MBmd5sum: cd02b83fe849672066c40a1734819432curlwgetcurl -o spaceranger-3.0.0.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.0.0.tar.xz?Expires=1753214468&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=UkcdOgksii8Y6vC28e1is2ou19Ew25vwO0cd7kCyRnY1W7FUht0gNBD-YoGaq6CTjSJ1qkJUFUUtZgmfw7Ek6-J5ptYxgpnFeNPIKLGqDXXDPmR2xHhlBcf~RHnBT81Bn3XLqxb~Rn2lMX2XHSJyQJKSIGeELeC~zJP~A29kc8s-opastaxk-8DLv0BJb1mPoiT-fYvkVxljADXMtyIT35nL37p7jOVIhWbplUQ-DZCQOK54DUp-tvUzwYZSQo~tEUIpAiM~qJZAxn0MpDaUZ-Szwe4Vhdwssb72Z42-yBCia33NJ~BNY9zOA2bP9lV1cnr1trEkXWQ9XQoGYH1nQA__"
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Space Ranger 3.0.0 highlights
- Space Ranger now supports Visium HD!
Space Ranger 2.1.1 (Oct 2, 2023)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 707 MBmd5sum: 0ef64524af2735bd2a0fc9eef5a605f6curlwgetcurl -o spaceranger-2.1.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.1.1.tar.gz?Expires=1753214468&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Bd4TeZdnu8mpizn9XYhS64~qy6ij-9XRFFoCiUnNMKCKyJ1ojBvLGBUazUkp7e6P7Nn~nZXESKTfV5PItuUGnDgGkwLbWF5~PXghYXFwQ97CqvNXBqbmDAJYK~zFf-~rLIOJoEP9TIbA-0IO3S9kqQbG1HSiyA~BkZTLfIWUot8Ou2MuG8fSRgdqzUfzisrXn1UfP7y7PRoOeJ-LRqG9OkHTZeY8p7Vr035T~xsFEP-zU6uMfBu83pVnZkdqMQTO3vbff~NJlDrEhy-lgjn-8SqSr09~sONAsrlzFW7YJNTLxdHlUEUL-LOnLNp35ZyjwKYyuhGiiaB6tBcjBUdzkg__"
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Download for Linux 64-bit (tar.xz)File size: 465 MBmd5sum: e1204bb11b3589bc5d5af244b51bfc18curlwgetcurl -o spaceranger-2.1.1.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.1.1.tar.xz?Expires=1753214468&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=ha6SqjFVmjlh3bpOGZ7ezY56wicgNGhe4o6rrRb56dobUN7vi~yIcNnen49aXFewToG6ZonSLzdlvw7tRTPz16NALduMOfudAWGugiOQTXSlu2v1fWp~a8B4OykiF~goVJ3UZc9S0r8JWkuVxjJl-ZCfCAs6wzDoN1IY73E4YfxvRmLhNuxuvkAWC8Qf~JqirFc0Ncuy7V7ici3BzQVWdRUxntcl2bpikigzxirnarNYF13SqzcdYACJNWVBp8fA0sjrmaOFrR9yYMsFumbaMvUGEY9QGGnA4Yw7zm6qLgSP831~hEvw0EHkg5TQgx6XIW63ZuNXzvJIKPHC02nZdw__"
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Space Ranger 2.1.1 highlights
- Fixed a bug where 8-bit grayscale images were inadvertently turned into 8-bit RGB color images for tissue registration.
Space Ranger 2.1.0 (May 16, 2023)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 707 MBmd5sum: ee94c453c44770b2b69d6be46b948e3ecurlwgetcurl -o spaceranger-2.1.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.1.0.tar.gz?Expires=1753214468&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=QFy4nO32ULzF2ql3S9yywYn3OZiwV2D10zD-cgvTrKvrqivKucylPdG8dQ42BWvX4NhlLafBr~3rlJyY-AyZzsx0dcccgcf-pxH53KVQVMJD9AZHSFzEx3xVE1SEnoVD~ynx1GLQYPVkfw729koBcNMTlXRIxvyXsoobuXpJtiDV~UF~ybYIC32Ig05abs2mX7~u88i~z2Squq2BRkZTXXqq4j-emAiGh0dKienzUTQ3bkeRpCisbDd-MBNDh3Z9xtLOxQdUqn3JW9dKQc7t~8YAy~GY8DDFzp7QRzB7PIpB8yoZFQgn44NiikORwAeQ9xXM2j2KtxL8kM2w0QaE5A__"
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Download for Linux 64-bit (tar.xz)File size: 465 MBmd5sum: a0d90129a81c41cbdd728e23a4d25161curlwgetcurl -o spaceranger-2.1.0.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.1.0.tar.xz?Expires=1753214468&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Fe-FS~U40t~jviPbS50h1RwyDbyIOfuwxq24OMl2EqN5QGzTkcLsbk~ai04263gmabzZMFX2KLslxEiVzmJP~cXNBhjvVggi7ZLywscb50dP~Jw2hlKtEkcaWBpONNDRqzQzQn4GDYGQqX96eiADFnFW9BgSUIj7vG~VLUVWMPZ-RYYrsh7q6~mj4hXJRqEj9OpwnUtcZGWcpeCcL~wlf3DbXrERrgbj~iHqQ66LiQ~-oc9cGYh~NtpgeRS6WZ-ekcgdhO95AHbHcLJlS6YdsSKmXpDWNozcsQ08SgPVUnnVjM-EPvBOsQIfRknJLLgZEtHdM95EuP4MewFkKO2CQw__"
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Space Ranger 2.1.0 highlights
- New feature: Gene + Protein Expression on Visium CytAssist.
- New feature: Reference-free spot deconvolution.
- Added support for bigtiff (btf, tf2, and tf8) image file extensions.
Space Ranger 2.0.1 (Dec 7, 2022)
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Download for Linux 64-bit (tar.gz)File size: 664 MBmd5sum: 26151804338ae4d4b44151232bd64b50curlwgetcurl -o spaceranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.0.1.tar.gz?Expires=1753214468&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=W7ksxfFefyvSpb7Qi3y-Qk6dNB7icMNqyFtWJEL77H~didiVHFoKNB4zZa5KHVtOut6nxcnnJHXEYgYNbH~~nSBTsnHiY-XiGUtg7FdrDb7zW5rUTmamnUM0GBEC-7WkijllowIrpPzR4g9TjY4xaCzhkfxEUq-0Ol7igK4PKk8hx9ZlvjsigaC6fTEOlcYyrgSGMkt8CgtsLd7ptxxsaXUCzAT8SsRDDj2ji2tIX9TakeGOFBoimsxCu0ny6gyb9NeVLlxtnPOVm9l0hwiz93m3t960AXIbRGY~Mj5fp3mF3dazAy13V3~W3DivSlwDD9lSB7v9i3fzhxStvGU6Fw__"
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Space Ranger 2.0.1 highlights
- Reclustering workflow now supports generating a UMAP projection in addition to the t-SNE projection.
- Visium Image Manual Aligner now includes additional support for images with difficult to detect fiducials.
- A new Spatial Enrichment table which allows users to sort and filter features by their Moran’s I value for Visium Spatial Gene Expression is added.
Space Ranger 2.0.0 (Jul 18, 2022)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 662 MBmd5sum: aec9ec128c7bc9fbf9fd6d31aa390d4ccurlwgetcurl -o spaceranger-2.0.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.0.0.tar.gz?Expires=1753214468&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=WrL5CWIK7d45huwSPWYASbF6Bw4lUNQrn~1hydSee-n9FHVOBrutecc-d4~bKdh~MiSsHMahnXvkq9lHggFMqunEVNJTh1HJy0hL2aSHi-LYacROry2ts7YrS8gimrg7sYGac94g9f7e80CtKcSDP7yFd2P0TGVA-xAlKQ-OW0D65OLC8UE5Q~xc7d60~Nm6kVOj2ktY7rczmrpRzKfgbgKxu7ePf-m18qDGl3VG8hqIKHwBlacIT3BwkS29ZhA0L3Y92hgDe2q9NO8YusbjIIF8jfRCHARvijcK90gfZcvfyHaJDYrL2dAAMtPJIN6opy1Lgyi6BdKknt0I0Ibi9Q__"
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Space Ranger 2.0.0 highlights
- Space Ranger now supports CytAssist-enabled Gene Expression analysis and includes image registration between the CytAssist image and the microscope image of the same tissue section.
- spaceranger count now quantifies fluorescence intensity in the image at every barcoded-spot location.
Space Ranger 1.3.1 (Nov 1, 2021)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 1.2 GBmd5sum: c2eb73125d9ee731fa825ea3734be1b4curlwgetcurl -o spaceranger-1.3.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.3.1.tar.gz?Expires=1753214468&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=S8FsqWc8cVw-IIZ9uJiS4tMEyOdjAB3XGWUS~ZgUB0GagvSkHRpikClWWIYILSidIXcNM9nywq~FYUJiIVF018Lf2nmb8Ig4dJAKNrBivNUroo~WgT6cx-kz0qxH309m1XS5Qes95SBgRyMOtOkMoFeqHJyWDUHsIUSRMB~zP26a4emuEQNTChGgzROuBjWrgDcw1QA0dbUok-iLuvFkITutgP7XaM0G5b5QBnMO-1qZKm9MDPPpWp9eizjkp7BQJ7jKY2unnhaebKZ0aoHvb12CHl8yJkJ63Exg7zGjPgt9SVKm0fe3f2vJpSWfTjlCVvag6nI4lCW43ZJwR2lffA__"
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Space Ranger 1.3.1 highlights
- Adds an alert if image alignment would have produced a different result if the --reorient-images option was specified.
- Update warning for low fraction of reads confidently mapped to the probe set to be more informative.
- Unsets additional sysconfig environment variables prior to pipeline execution, which may otherwise interfere with the pipeline conda environment.
- Fixes an issue with mkfastq when bcl2fastq requires LD_LIBRARY_PATH.
Space Ranger 1.3.0 (Jun 9, 2021)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 1.2 GBmd5sum: ede7f98db5adf7785e35ae0508c48f74curlwgetcurl -o spaceranger-1.3.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.3.0.tar.gz?Expires=1753214468&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=ofqqDwwwjcMw5c~JTf05RarM61DSq0Rjz5hVDx8g1JdoaU11ySi2VFmW~tf2A0cBQv1ICIGqNDKXez5btFB8soSX4PMrD3vy956iJQFiit3u~yKtz2dhdUY50kk2CH3l64JiTF120ohQkF2Acdhduxr2lCToAwWxKrGQ5JnKZ55E3iP0nf7s8q16BQDBkvh~e0SwCQcHk02TIeQuIV2W8Uv5OGVJgmmegU9VUIOP7~fA0zLNWHt6X5TWfXwZBTJp2obQqBPQ-gKUeTjP~ebgFWYsbHC0-DR4amNln6ARbZREiOiQTUwrTkqnzXA4KFyiwm6u1PiaagYgRV3dmWDjyw__"
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Space Ranger 1.3.0 highlights
- The recommended operating systems for Space Ranger 1.3.0 are CentOS 7 or Ubuntu 14 Linux variants or newer. CentOS 6 and Ubuntu 12 are still supported but have been deprecated.
- Gene Expression analysis from formalin fixed paraffin embedded (FFPE) samples is now available in Space Ranger and is invoked by specifying the --probe-set option when running the spaceranger count command. Space Ranger 1.3.0 or later is required to analyze FFPE data.
- Space Ranger now calculates the Moran's I spatial autocorrelation metric on a per-gene basis.
Space Ranger 1.2.2 (Feb 3, 2021)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 1.2 GBmd5sum: 3280a085714ce7c894dc14b76312bcdacurlwgetcurl -o spaceranger-1.2.2.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.2.2.tar.gz?Expires=1753214468&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=aA~QEjf3QBtBsehdvhGpHKbDfyV8rGzhgQQnOTTGPzKRm9H3cyhtWv9MP1try7G3~AwR0kRLSZATkNQ6vgXT1yEl56gnotpRade9U560kMZn1WtbkgramTRZtshko-yJoeueStxi4d7nZEOXDnspmdWHFDN1~k15w7zEuzikzIBupaS72KBPq05S-pymH5lwpozs26yjFOHHDlPNGc9q44aZQqEWFRoFHzKkctj4qRhsgaHFUemqcjWJ3gJIEV8Cr9~1qsK7DHhz4aaqVzsUvd3JrCy~DhB82zYKJOynjNpIPub8ZUwqgr26Ia02iyM9MtI8GEh5StGln4rO78UKFA__"
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Space Ranger 1.2.2 highlights
- Adds support for pyramid TIFFs, or TIFFs with multiple pages of the same image at different resolutions.
- Fixes an issue where targeted samples run against new references would fail preflight.
Space Ranger 1.2.1 (Dec 10, 2020)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 1.2 GBmd5sum: c24ecfc95c5e4f1c268354c5934da98ecurlwgetcurl -o spaceranger-1.2.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.2.1.tar.gz?Expires=1753214468&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=nGlwI07tO6sKnHAYXuAPpwwmn-OWUdgBi1kdDiD7Q-V5QHmiORzDskdjfELEU152~X6pgYLuttU5~zH7giHGFFCkjCQd1B1jE4EzAihhgxujIelGvNeP~54ZtkFpD~HCbpeW1vezIbk1frG~E5oPr7EwoNdUYccMUVQcCVm53ks9zvuWJ1-NxuItKh9wqjazP6SP4xnB2hCKh7zEi6pzIv8x5t6jgUqtD6Ma3URi1x98cUZ-og9v31GrQ8oTNqMX9gitX0C6xzgKcMc~raavWWV6F-MaX6DkBvF~ZjZod074DIzlb0x0sW8cRpI--upu1OICqUanHh1VPhEWAJxhqA__"
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Space Ranger 1.2.1 highlights
- Fixed an issue in aggr where files would fail to be copied on NFSv4 File Systems.
- Disables multithreading in mkref to address an issue where mkref would fail on hardware without AVX support.
- Better error handling if the pipeline fails due to a missing .env.json file due to an incomplete copy of the application folder.
Space Ranger 1.2.0 (Oct 27, 2020)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 1.2 GBmd5sum: fc21902700779111afc3c813bbb0ff5ecurlwgetcurl -o spaceranger-1.2.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.2.0.tar.gz?Expires=1753214468&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=DOLsjWRxesn122XeezH6dH7x0YJbRaWGhD8EeDa2q-VvGq1KCKv0FFR0pWmFp-Rot4A~ywrayErSBuILyM1MtvfBM~Bg0va7gC1Swubhq-7XKrEg1aXqDSB~Dfb0wIhJ24i3gZpHSSL4AE4y59zEHCbLIlrtsh1VF-WMDzucoFh0RmafGqP0lYDW2JiZIpBY4wyFpx45SQh7a~AAtCA-NMhgFcf-QsIrv7V2O8S1awCwSUOHY1hUozRqSgnjIwpCg-~WzX-gP~RhVHGTOb3ACEnhs8uMMpDpxWNM6H-508iHD9mUtOAWQruTXQaUUb7tC9GZjetaC5jDq3IgMYA~ww__"
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Space Ranger 1.2.0 highlights
- Targeted Gene Expression analysis is available in Space Ranger 1.2.
- Introduces the new spaceranger targeted-compare pipeline for direct comparative analysis of matched parent Whole Transcriptome Amplification (WTA) and Targeted Gene Expression datasets.
- Includes the spaceranger targeted-depth subcommand to estimate sequencing depths appropriate for Spatial Targeted Gene Expression experiments.
- A new command line option, --no-bam, instructs the pipeline not to construct BAM files.
Space Ranger 1.1.0 (Jun 23, 2020)
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Download for Linux 64-bit (tar.gz)File size: 1.2 GBmd5sum: 708b93997295db31bc457b3d9af79ca2curlwgetcurl -o spaceranger-1.1.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.1.0.tar.gz?Expires=1753214468&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=dmKFzZYShutup6yCMS0-VkH1-lUO9oIYubdOhlkVpAC0LONMVIfV3CXx8gCirBz6cT9AWH6WMfw6lNN2uRyyXXj-eSi4cQAjLIwfqPRToVFtkv1zJBaW5IUxA6pkJlY~FMIo0Vu9CqXaJGeWPsIIwaRRIXPK~TCx~91eGXAWsswXBeN57Q4~fVOpmk4G80e~uZpsw~a1IP1U-Ri~o1s0O05x1iI3-7-ivXXgbaVsMpjcMr-J8qZpewOPmwiNGCZh463cpCgVvH8R~Jfw8yLEm3vD2pD7V3YRK8sVkLQyHvhdkO4SjMLq2nPOnt9DqKAyjrkOiWkbKexVsWriCCz5gg__"
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Space Ranger 1.1.0 highlights
- Support for fluorescence imaging input such as IHC/IF.
- Aggregation of multiple datasets.
- Optional automatic rotation of slide images.
Space Ranger 1.0.0 (Dec 2, 2019)
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Download for Linux 64-bit (tar.gz)File size: 1.3 GBmd5sum: 5cc7fb86d0cbff7df687b11575efb7cbcurlwgetcurl -o spaceranger-1.0.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.0.0.tar.gz?Expires=1753214468&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=ZIQzMRf-P4RaGCs7gZ3MIhYyoO1L9dv601y4ur4piGoMVlob6vp~spnWr0ytvfIYhIIDLSz9fNZmTxEGPfaFPn5EPkUehweuwsjQ6uFongV5QnF1oANy4aYfWjpEoTP3iNMjij4sf5DuqfxhGAWHNqzoP49O7mzppPZawdsO3p1FziC5rCXxvuBb-1bqWJOnCVdxyvgRK1pUPqkESF6dURVmwIHdsomVGfQV90IUWhQXbiQCq42jyrAZ1jyHfFCHa21Uo8e2laBzv0Gza90EMugzrReMzzm9bULbxfolZBTCzo9TEH5CeSDI7ltyzm889MdunSZ2fd1r9ig04uDtfA__"
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