Previous Versions
Space Ranger 3.1.1 (Sep 9, 2024)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 827 MBmd5sum: c0b9a274d7d3692e28f086818eb55e62curlwgetcurl -o spaceranger-3.1.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.1.1.tar.gz?Expires=1751440725&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=j1bG7bUMhkSZbSiBDhhJl41gUlujcyJpJyKwEVYvZmaMb8qZ8fed7yYDb6deHAxJGtP7iffgiAWjEN0O5UGuWhMqSZfmhuQqx~TaugWI09K~mH6ubAvYRzwjuQEeso~O37qehMtePuMTxjq2AK5VphjWydwQpCDfqPlPewC1T33prhVKsb8hj-QYKm0P2hIdX8IIwE2~korLuuSYvC23cWOjLrilVEUV6ZKgXOgJgGwAkESkhN9427VHo6tSENhdnnk8rbn8OSktty7Kaj54vJ415p-4i67sgPnnZ52oFHVhudQVhmnVYKNZ~XyQLM~apxwug95h-rDCjIqe83LOHw__"
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Download for Linux 64-bit (tar.xz)File size: 527 MBmd5sum: 4adde78374877cee92d056b903a77759curlwgetcurl -o spaceranger-3.1.1.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.1.1.tar.xz?Expires=1751440725&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=ohzaAc3ObaZdQxtdjsrFmcCkIZuxyDHJQYuKsxy6eIy6Y5zFSPGaS4KUBalHzesVPH~GF2AyAOAHpdwQEHra42DpvMVNiaj2ue~YayWlshxTLcl8r41suMPWymJS0nA3wCQqBOZMR17e2IKb39tcydZTVLf~tbAEEaquwEePQ5xPwn4TEsj-xefAtGzK09a8NmqtBIeRAPkzIo8FIoAabGwj82A~XTgbBuBTAyHBl4y64yudJcJTtipKZjqqraeW0i9rBvkHvBhQK7sLKjaTe1QvVaDIt4GBkv9mjiOVxwa9n1PllV6upIqa8x4OkgtwAozX~qfOdqE5YkUM6-5JTg__"
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Space Ranger v3.1.1 highlights
- In Space Ranger v3.1.1, the pipeline has been overhauled to significantly improve the CytAssist to microscope image registration process.
Space Ranger 3.1.0 (Aug 28, 2024)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 827 MBmd5sum: 13a2c82adfb1f1efb737e2be121000d1curlwgetcurl -o spaceranger-3.1.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.1.0.tar.gz?Expires=1751440725&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=l1gWMNqiWOeGVJVQHf6XpydzrBK7wAD9gvdRZo--ht53Zj2j00gjqj6sNBz0NOVkRXYfE4swx4Y~OUpx3bfkr7u4THshEeRNvsaa8W5JtuO-w49cG5X7F~YgHDwhYxP-V-aagEsSTyWWc8FUlRmBu39KuLZWA-SXpi5Xyct-QmOIz9Gr9Dde8NNFpPhNNrzhViPl2tz4-KzqjjuiVbVKrV0LoZmZ55USSwEaVOmY2fS8nWIVsoY1pKFOxxpcUyUpuGYs6-rIZoWRAyoTQIcLLaMp4XeEk3Xa8HahCRytDad7SRSj9l~PpAKcsTzK9UTjpGvg40xoKqkeKGMpFgtCkA__"
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Download for Linux 64-bit (tar.xz)File size: 527 MBmd5sum: 28010d3724e9effc488470a961fe39fdcurlwgetcurl -o spaceranger-3.1.0.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.1.0.tar.xz?Expires=1751440725&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=PD-ifGKYD4CTKtmL2ITlbjdlyorsuy-y5u~ZBcKnpMM6xo6cLehxhocsddYoO0GjjXDnFQdj7I~0T0A6oO6-KlipYyn8dbpWzpSVpDg1kgN-NxIU3JkTjXDYGLGmVG-a-3AUXw3t3vExeRSJo1YHv4kxtTLDsKK89PdDBMXde2pYRxa8eybKXLcQDEt0A0HZbMKR-7LW5UqOTmSb~1oV85Bn7LotGsHeuNELDXSQKLCGz3ewMDMChPTGWeCz-FvPqF22LRCmWa2JJNE9WB6vJ~3nvBq2LkG1wOsxszz-Xl5sdQv~N0gAHlVHiJlhczeCL2NHPK1aXf0tVD2Cvjs2vw__"
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Space Ranger 3.1.0 highlights
- In Space Ranger v3.1.0, the pipeline has been overhauled to significantly improve the CytAssist to microscope image registration process.
Space Ranger 3.0.1 (May 31, 2024)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 757 MBmd5sum: ae65e7ffdddbb966277b7d1776f8c63ccurlwgetcurl -o spaceranger-3.0.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.0.1.tar.gz?Expires=1751440725&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=AY34Lm8F1GlINgjFpSzq8svKKPcz6UTrashaFxSALZQuLMP15ddBKHMJmS67Wb4wdNCbe6dHD54V0QaB5Ck3bbygx-0mfceN39gzPLkb9aE4FFXLKvoI9GypLJS2sYYiYNirNrEQINMzcw3yGiNRbVYmF9y81eGwFKHm6UwG~PLGdq8b-Borzn62RI4RdZe0A9UPxKw1w80e5dl--gFCqHhY5RJD-66u7HW6SNPcbOPynCLKvS2IFkYQMjPyP9c5OtD~XRlseHD6zdBLoibw0NKDLIbEVyDYLiFGhz0~R-bt67EehnxSejKbYnoixCYgV8GdkBMGtT1y9C-ZJmhYCw__"
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Download for Linux 64-bit (tar.xz)File size: 481 MBmd5sum: 451495ee2074ff9adbac49ff8851ea1bcurlwgetcurl -o spaceranger-3.0.1.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.0.1.tar.xz?Expires=1751440725&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=iZjNj70iRnQpTtSnEbVwbxytfBravsWSFWQKPeh2uahD3Q584sQ4NnglreXWaABIYLgqhzJPO7pWGc0UknlXZdmrlH1tEuYA6q3VAjDv6mYQ9ifZIoDI0q20HiLUh7qehGzXt~kCR5RWINNRpDOWNE2T7p783bBmg6r5YEiB2sTXU8tOmW-86BbTSaWMO1-NBiDQAto1rnhQX1S~5G-VzMLjK6TO6BVrfVri0YzQYxJiyxd55HE6R2CSileea0WDLwlByWTh1i9WnCyGUtWi~ODbzv~WR7j6Ew2esIfIclCX~rKpqyZ5zkds2j9zMedh96ViSIHACmgFsyQtupEBjA__"
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Space Ranger 3.0.1 highlights
- Space Ranger v3.0 now supports Visium HD!
- Space Ranger v3.0.1 includes bug fixes and other improvements.
Space Ranger 3.0.0 (Mar 25, 2024)
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Download for Linux 64-bit (tar.gz)File size: 795 MBmd5sum: 19f4443f10cf94aff5768bd8968cb214curlwgetcurl -o spaceranger-3.0.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.0.0.tar.gz?Expires=1751440725&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=AVzJRorF-C88b~7dBhhWC5CXe2meVL1wPwXu7KHcv5fNaU-MJ8rDnt78ScraPp5tc59V8bzbwwhciuwXF-ELiDjOtxekmblMJ1m3wHzWyzenD4xfRYgV6e4W2okXDjdBbo6j9QUB1ywF2OVc0QV7bmzwMmybeomDhZGPpW9SBBDJRdC5e0QurocxHzssxNrcm-yJVZaWEdme28N4XbeOKmDSvE6Sqm~MrZEgFegQoP6tUgrjk5ST7~VXfkpbMj4RPq0wtvWieuLiFHIiyiaRq-dHCjQK8UrzCmZ4q75KEofzNKMC7yIOzXN97auBeC77BL2e1WjNXlpMHw9ZE3OmmQ__"
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Download for Linux 64-bit (tar.xz)File size: 507 MBmd5sum: cd02b83fe849672066c40a1734819432curlwgetcurl -o spaceranger-3.0.0.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.0.0.tar.xz?Expires=1751440725&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=ECnB3MFZg9R2UERP1XtByAtBB-mqks~kJyEP7XXfvrOi7iqrkEXl-XpgFwXyWQXiGIeWZZsKPegrPPRugp6~VC1G7t~kPRxDjwyOnAo-ZddeO9BfbSSDCXVtT5SXHS1EjdWNazRjEMGuVMH22vFdZ7ycdWmlXgwM-RsugK75DXk97z6YQuENyVAYqYm3uVadh6LRIrGkftaog2GmxkgmhkOieALt4D1JqjCJpSMYA2uBajgOLp02HMz3B1x8kl1xC2gXZtLyTJPdkFCy~HqayZcPquxofpBspzPXcuEmv5vwxbFdt71ZJWiR7milGQC~F0pPaLaJxq2gH4kHL7aeuA__"
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Space Ranger 3.0.0 highlights
- Space Ranger now supports Visium HD!
Space Ranger 2.1.1 (Oct 2, 2023)
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Download for Linux 64-bit (tar.gz)File size: 707 MBmd5sum: 0ef64524af2735bd2a0fc9eef5a605f6curlwgetcurl -o spaceranger-2.1.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.1.1.tar.gz?Expires=1751440725&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=L2igZMMeUfMcUT7k3n6mABAQ8VSlWe7vBMtmRW86~G1wKx-vG464Uenk5sbo~u1MQ4jTnVPoBVzJ4Zkono9Zq1y4ndrxivhVs9CwB41RtpI4LxmGQBHIo-wIIsr0h0aySYoNOfNdPOLwF8JCTFiynH~GuEfydLOP2kOGx5CPhkerfNCPBC3~FMsoJBlfBOlr~akE7gyb3f17TullJFXtXoWJRJXkBbiQ~pDxm1mpdh3zW2harnAYwoxPizLyk3lcmW0MA1K8B~ZS7Rj0RjD8M~yzak~DWBMIlhROt3zKQLqD1LHQ1pm~tdWZJGd2BiHjZxCQkc9RsXC5DWvku9EbdA__"
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Download for Linux 64-bit (tar.xz)File size: 465 MBmd5sum: e1204bb11b3589bc5d5af244b51bfc18curlwgetcurl -o spaceranger-2.1.1.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.1.1.tar.xz?Expires=1751440725&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=NstcWAh48oFmxwJ3XT6zi7PKTz7Fl~QRnj3n9yQap1qMvJKi6JqO6xdcQLnm~lzdY0C1g0dmL7n4H3YgxuUnWbxD8YR18hHeXJoJtCXiKB31TaRoowNbEUgetIOpE02sbK-ITi2z~aLZQP~6OSX1euWXL0qTGa~Xr5UPrQG6ZvgUFb5RoOH~-ExctSkSHIA1SkKxBOmNfPOcdJFxoeIZnd625r~lzgFC2R-gD66WvH3Pn8xvP08dZz7ET6H5p8guTvfW2Ybf6pOR2HxbFzLAGNu~romSBxzNVLsGp9SxX~jaEfpM0sv2rlOlISnLSYINPxVE8Rg-XYm0B397-Qn8gA__"
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Space Ranger 2.1.1 highlights
- Fixed a bug where 8-bit grayscale images were inadvertently turned into 8-bit RGB color images for tissue registration.
Space Ranger 2.1.0 (May 16, 2023)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 707 MBmd5sum: ee94c453c44770b2b69d6be46b948e3ecurlwgetcurl -o spaceranger-2.1.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.1.0.tar.gz?Expires=1751440725&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=VWt8yNfHxFdKgS7A0Q~19PYyjV6OxiMmUp1d85UEjtGSgSp2CPq2GHYrB8LPzAgrr54rCSAQ4H5oY09AGfdVYHTWEvN6KhmDkkFPb04Lkuhgy-PWzja2sbUmvTVMSKoEYzxDYmVIRjREmv3uiRLFbsdQTU0lPd97c6dvfycZ9z5oJBSr281pLj0gMsQSy53lYg3cuEPSebkIQpGSh7tPV1iSLxnul5RpPqqggVJus6FEXz5QFfWmFpeUYUfpjeCagLG6CiFMQVTMstmUFzxROZPcdQ1cB1fj3uLo4KT21HxgEVnY5i3-O4d7f7Ju551-flA-ujPJJvcOkpM79BJoyg__"
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Download for Linux 64-bit (tar.xz)File size: 465 MBmd5sum: a0d90129a81c41cbdd728e23a4d25161curlwgetcurl -o spaceranger-2.1.0.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.1.0.tar.xz?Expires=1751440725&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=V~7txasuck3QNA1nVfNgLMRVA7VGOUkhyLgTumCgV1WyZ-n7PuDKcSP3yydirBl1gF~AivS2BN0tQ6~YqlP~SICdstpSBXz4MZxNeQCN25dgbLuWgXLwqIPYynCbkimlkwIDBUzcz0FZVQS-siNOalKDEsciN08Xw4fIUqR9XYeq0l6~l1prYGtkqjZ7G-Bm-n~O~JKycB6ng4jxDIcWqzoOyGSEa-gg-sMW~5tKxGIKilpU1CmZFzLK8IlUi7O9bviKzIMS0cFGvMWQAX3j6CVAl3QNSP0CkUivmExRAFozNoDkG~oM0bPy9901Rk7vDt-2emYIEULTGiRHOWmJIA__"
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Space Ranger 2.1.0 highlights
- New feature: Gene + Protein Expression on Visium CytAssist.
- New feature: Reference-free spot deconvolution.
- Added support for bigtiff (btf, tf2, and tf8) image file extensions.
Space Ranger 2.0.1 (Dec 7, 2022)
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Download for Linux 64-bit (tar.gz)File size: 664 MBmd5sum: 26151804338ae4d4b44151232bd64b50curlwgetcurl -o spaceranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.0.1.tar.gz?Expires=1751440725&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=LCzwdV8q-Iey0mTdBcGsrcrlm9~c5KkRPz-ZUfIq7gXUKVnQVvVpGiGQvz-npAfcf-2C28G4hxyBdNUwb1mwToLRKhAaUZIUHO4NFtdaULtwQOUvx7MiSpY4dkzm4IY57hV3EMxWojwdhiQ5r2FHOyVLHbUmejUG7cHtxyP1-HHIQ01H3o2XkJ4DwMp7gw4vxFMOZSyxToAKUB0pPIEzAse2aaUmFTJ0umA84lFIk--Di7U0qEMSEpTe0D9LMAROcZMnhYN6CWI4L4wgWCvFjOQyh4yU0s9gW9RSGC9rSQpmVa4mCrpm357blshSeTEwWtPUClg8HoV-Zj4Y4i6nCw__"
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Space Ranger 2.0.1 highlights
- Reclustering workflow now supports generating a UMAP projection in addition to the t-SNE projection.
- Visium Image Manual Aligner now includes additional support for images with difficult to detect fiducials.
- A new Spatial Enrichment table which allows users to sort and filter features by their Moran’s I value for Visium Spatial Gene Expression is added.
Space Ranger 2.0.0 (Jul 18, 2022)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 662 MBmd5sum: aec9ec128c7bc9fbf9fd6d31aa390d4ccurlwgetcurl -o spaceranger-2.0.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.0.0.tar.gz?Expires=1751440725&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=L66eRbZhFYT-eT6EzXYJwPPxXUKupm6swGHGLdLumpPKYBl1skGIxoiXbjhiCUqrFSN12cuWisy3NZn7INXWhmC9i8bKfITXtTHP4LuFziK~oF4dRgBWUyufYnz0h5VqlXk~ZbpIYeM7L0J2n224ok6IuWPVED8cn8Tg6m~Utl6cRjDr6VWjslnnNExgGEgiLV154Nmz0Xp290nsxoEoLem-xdgpFVYdnxaxfnQX7XOoaHfT-ghmwQ1Wmn7x9foBWkAFtHDJQEJdVJGqMfVtMa~2y21IcYucKjQm7SvTk1wQ9x-5E8~dfq-xyAEZCsvXAi4CWS4eF8GWp3Su4aqyag__"
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Space Ranger 2.0.0 highlights
- Space Ranger now supports CytAssist-enabled Gene Expression analysis and includes image registration between the CytAssist image and the microscope image of the same tissue section.
- spaceranger count now quantifies fluorescence intensity in the image at every barcoded-spot location.
Space Ranger 1.3.1 (Nov 1, 2021)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 1.2 GBmd5sum: c2eb73125d9ee731fa825ea3734be1b4curlwgetcurl -o spaceranger-1.3.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.3.1.tar.gz?Expires=1751440725&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=AXaQ75Z7mPsUtCChgN0JrkDXBgYYYV12jO-FF5JgJlXgvfx~1ANLrrz0TD22PJ-FxIW1rXAmYXHcSeBNTNWgSMDV9g0ec4WgKivvJ7HLteKanPRHV~bR9ieFm~o3Fr9KPy56o-LK59RFNwJbc6-kF5I-No1Hc-zVu9N3QDYXaQK~xZcRigPQNODrVgU7~hOl7ebFB8W1qSlswvDKL~gNyziMezuDC8iwz-t9NTe4-yK8FgWbOIMO1WjXg0Fel054yYNWJjENwPgp96XAFabAyu-dHfBiKfaHNEe0KbcuA6xiqSU2MUpBS3wLLtOelh0XpBv7c1nzP5ve33dYf-n~yg__"
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Space Ranger 1.3.1 highlights
- Adds an alert if image alignment would have produced a different result if the --reorient-images option was specified.
- Update warning for low fraction of reads confidently mapped to the probe set to be more informative.
- Unsets additional sysconfig environment variables prior to pipeline execution, which may otherwise interfere with the pipeline conda environment.
- Fixes an issue with mkfastq when bcl2fastq requires LD_LIBRARY_PATH.
Space Ranger 1.3.0 (Jun 9, 2021)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 1.2 GBmd5sum: ede7f98db5adf7785e35ae0508c48f74curlwgetcurl -o spaceranger-1.3.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.3.0.tar.gz?Expires=1751440725&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=OVwLy0ycDzpvcHOhk6pWGmVfZwTmrVxsa-fZ09GsxDg~wbsfJuJyoF5kWXo~Rdgp-~6dl18qhaGx~mbO2dgqbqXYXLgQIr9zkO5LfEH4YN7HiFqN~hUI9BQZJgXemgPk-LI5c0OU1zVCLTrWwPTGfeKKXpcDyeA15t7wAO5FNz7dxJuyzcckPf~K7dzVnmQXlLyqsZKwREV8CQcffTdZTNzJBdt6790OeX48g9GQTyC3KedQb9XkocccH7aQ48Cf95VhQnlj772JDnUf7jlQuFNh3TnEZjFKvbISDZkbCra6NauiSjJVAuh1HloBYyOJbhqLQEUvBe9oJ8ASprwOiA__"
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Space Ranger 1.3.0 highlights
- The recommended operating systems for Space Ranger 1.3.0 are CentOS 7 or Ubuntu 14 Linux variants or newer. CentOS 6 and Ubuntu 12 are still supported but have been deprecated.
- Gene Expression analysis from formalin fixed paraffin embedded (FFPE) samples is now available in Space Ranger and is invoked by specifying the --probe-set option when running the spaceranger count command. Space Ranger 1.3.0 or later is required to analyze FFPE data.
- Space Ranger now calculates the Moran's I spatial autocorrelation metric on a per-gene basis.
Space Ranger 1.2.2 (Feb 3, 2021)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 1.2 GBmd5sum: 3280a085714ce7c894dc14b76312bcdacurlwgetcurl -o spaceranger-1.2.2.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.2.2.tar.gz?Expires=1751440725&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Yr9RK7CY2ogNXwY1lr96vNGxPGLObV7xW~RX62oyYVMl27fiu7MjtQTGNvFvd3~f6amUd4fB6Yi1O5E8xuWQxXZ0ng38Vc2Ken-Hl2krsnUdUm8yA1sVPcLsaMDI6FPOZI6e3Jlj~cUQygSKxxSgths5zBWoLLhXDH0s1qrOVlOUJS2U1nuxKlZ3HONsvQMCjBJgpaeHxUL5C-lnFfrw63M~ZOj5gt7OiBJUuITlhZWfH9fNmHtyPEAC8LlLP8IO~P9KD5omdSLy6LHrsmJDmID4ga~uhVxWW9~yd9WEvHqFthFbi4UFLYusHQIGkgifyELBg~IXbH9xLkTfosT44w__"
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Space Ranger 1.2.2 highlights
- Adds support for pyramid TIFFs, or TIFFs with multiple pages of the same image at different resolutions.
- Fixes an issue where targeted samples run against new references would fail preflight.
Space Ranger 1.2.1 (Dec 10, 2020)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 1.2 GBmd5sum: c24ecfc95c5e4f1c268354c5934da98ecurlwgetcurl -o spaceranger-1.2.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.2.1.tar.gz?Expires=1751440725&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=VSR07A2o5I3zIYEfC1RumP4PDVsEX3-66zi1kgse2j2hhbHHwm~i7wqmSxH68A9lsb~aozu080cZx9YcIvqUqKIE-dfxvoAdcxugyF88CVHdIxWilcZ03csNmaZ96lGe82McyBq8PynPVUse5Bkn8-faVxVB-UH2Dmz8fZetGLGCcSC39-TNSjcnkmYbNb9fxhguWJ2~Opp0SecLSja9cQF1rLfGhz4rXLAVoVfhTOjIe8InSXhWTEoSBRtoArG3JmqTUP33y-qE4JkBazmR3Cnul3caEVNqP11yWiwC-S3nSoPpDW-CGa6Sfdm7cpLowr8XW1LXcPB~YvqbV1hfqA__"
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Space Ranger 1.2.1 highlights
- Fixed an issue in aggr where files would fail to be copied on NFSv4 File Systems.
- Disables multithreading in mkref to address an issue where mkref would fail on hardware without AVX support.
- Better error handling if the pipeline fails due to a missing .env.json file due to an incomplete copy of the application folder.
Space Ranger 1.2.0 (Oct 27, 2020)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 1.2 GBmd5sum: fc21902700779111afc3c813bbb0ff5ecurlwgetcurl -o spaceranger-1.2.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.2.0.tar.gz?Expires=1751440725&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=LDJHC~mp4eM21meqwxl8B5UW57862BtWQOKWKnbVrIgQx~bis8hYOyScWGl9DalpiA8fDPkjLYxI9CAzCeOJG0cRhA6dgEbVWAIEtXA~v9M5LMT2xQWrx4cjN9GY8WeOStjlmbMZLXAhH2pxv20ARchdbF2ODcubSF-H2wbKoFvHxoOVa9Yqa7XngOMO4mwI77~8j~-1ILVYgIJ4WNPwzR9E9OP06~ZNR6yosUiXiLXD1LL4EtipIZOm6EQkNAtSo-5bzoXp7YSh51iiA7Tbf1FcuTcQlimS3-Pd8oLaDYkxrG0HTkGV4OZlt5-hooxVUdBk-7LCFBP3Kfzh2pn3VA__"
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Space Ranger 1.2.0 highlights
- Targeted Gene Expression analysis is available in Space Ranger 1.2.
- Introduces the new spaceranger targeted-compare pipeline for direct comparative analysis of matched parent Whole Transcriptome Amplification (WTA) and Targeted Gene Expression datasets.
- Includes the spaceranger targeted-depth subcommand to estimate sequencing depths appropriate for Spatial Targeted Gene Expression experiments.
- A new command line option, --no-bam, instructs the pipeline not to construct BAM files.
Space Ranger 1.1.0 (Jun 23, 2020)
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Download for Linux 64-bit (tar.gz)File size: 1.2 GBmd5sum: 708b93997295db31bc457b3d9af79ca2curlwgetcurl -o spaceranger-1.1.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.1.0.tar.gz?Expires=1751440725&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=VPjBFFanrqj1lM2k-MKm6k0Spur1PFNBt3DE76OfwPEy0gN1UJNhWYefV4nGQtLmSyl78EfejgIB6Wx1xVFn5zNOicoK5AV3cbn5ws2tpZ1sVN9uBIw2qD20vJTo08zt7I~iFkJMknm72-y0z1F1Cj3EDVacc5bT8yAI55KJfRXr7hyi3aEbbFtPTMFnkHFZPIetd40Wkoom3wX60bbH6-OMo4xBL4G5mHl~~UBj110BHgFDJ~ydwqP9xVVYZn0xAd~7osDRXExoQ819dcMdigNBAm~DsPUcUWD7nt1Av75gL~Wb9CmsoxsTrm~aZL4MX7eCgoT86M0kaX~wJAIFsQ__"
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Space Ranger 1.1.0 highlights
- Support for fluorescence imaging input such as IHC/IF.
- Aggregation of multiple datasets.
- Optional automatic rotation of slide images.
Space Ranger 1.0.0 (Dec 2, 2019)
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Download for Linux 64-bit (tar.gz)File size: 1.3 GBmd5sum: 5cc7fb86d0cbff7df687b11575efb7cbcurlwgetcurl -o spaceranger-1.0.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.0.0.tar.gz?Expires=1751440725&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Jh~cKUqyHLh--T0Oews50yIbK0f3zzwEvKPp~HdlH-b87xbZY6EnzCjvOfz~p8fO2aITwJhf9PMq0nhEzjxuutTrjWEPHSNJHSco-JIqsCxcCIXSU9wV~ssd-a6QHoIpF6xZzlDpsrsKH3fsvxzdJoCvuHeo-hpyc265u~VVmetxXmX8468Z1BAfbpkB3iThSsQl50tx39O176naEhSsWVHP9PGDGpNlqnMJadMYY2VDhij0HgF2mr8i6CnrzT~oOlcsDAk8Wt8mZxDsXQmQ7D1zrPrY9dGuUtqmiS31dFDWz8ikYJNKiUrfT2lfUq0KsOR4ffRP-QK4YGF25MaBLg__"
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