Previous Versions
Space Ranger 3.1.1 (Sep 9, 2024)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 827 MBmd5sum: c0b9a274d7d3692e28f086818eb55e62curlwgetcurl -o spaceranger-3.1.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.1.1.tar.gz?Expires=1760484693&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=I2URuPuifm6UJpdJZTWEtuOPFj559Kj5UanofQB1xR-05DpcjRONP1Dx2DtUeQVwrohTZWYD0hOmh6KYwIzDP3VngJuunwdBQt0OhDjuiRjgQsTW3IU-QOKhU668vAdPdSsMMKkvMJ9uCVMQwJhT8-vm~WFyeNUsWdHycmo-w3LSCv8U0AUzTyyN3YZOCzVDKapNqGYK~DSOii6fvbU2Sc2vHVtrtuIXVAL6wN9e6a2fn1eWn47nI2wOl2beRZiqsNFLjuxAQXrin0l5ah59qDbs4s~P0vsWH7Q7LUOYMv4g9TPCzI5vQ1Rl9~dB6dol3lJVjuuxg61ylZDkO7IW7A__"
tar.xz compression
Download for Linux 64-bit (tar.xz)File size: 527 MBmd5sum: 4adde78374877cee92d056b903a77759curlwgetcurl -o spaceranger-3.1.1.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.1.1.tar.xz?Expires=1760484693&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=PfIoqVxtDGLa7JbQOt5N19XeYVG8TZ440BGexuEMgLES1WwuMUDHg7Rls-WJE24XQqgP5CKjedJJEDR-bVAf8az07c4rY3hq3HaWnCKs~5leRNjoO89dHG~-s-fW7SIUceUiBLD8YcCw7IijiWPWuNVJ7r0RPrUXRGwpphbEDCuL9SAWj6GsvnOo-nWvM4earKuHaAyVTpOD-K0Eg-ywYYr9tgx5pvBa5mTcLf~vDBtDGhCQDzkZ-U6dvwQCmJkkxBRS-hyYONfQ1B5luiGNhmHJwXS0HT0HlJyFZFqdTDqljBnfVDd-IfCNe2KihWmqr2rHYpQkPtuJzabQT9DKFg__"
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Space Ranger v3.1.1 highlights
- In Space Ranger v3.1.1, the pipeline has been overhauled to significantly improve the CytAssist to microscope image registration process.
Space Ranger 3.1.0 (Aug 28, 2024)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 827 MBmd5sum: 13a2c82adfb1f1efb737e2be121000d1curlwgetcurl -o spaceranger-3.1.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.1.0.tar.gz?Expires=1760484693&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Zvd6A2DZz3M2WUJAKVx8eQiESLaREDE9LrlmlaRx43R6fBa9pHtwUFDCg7VgLNLt38iam3mTiVq6ZjaWgXIh-9zl4gyGfgsgVzMVV~Cf9bdbvOzB40kn4dgyJhLJJAOlym-UOi0Wk~~IYhKLNab5XnNmcvuN5ZEbGYsG59Rt2SPi2UPhBlhDlNwTOm7Z~egaGk7EoREuhWKKF1363smx~UVL0PIJ9dE0PttDnqLVuhmg6dIJ6clY2SXpk-2FdjAuKU1BDUJcR~bYMev~FYOVBXCaU5XZDfpDBbyRUllPoAvuNGEBYW8yNvOvrQ0Rd0G5sHhoUouSfqrg73IWjtehJQ__"
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Download for Linux 64-bit (tar.xz)File size: 527 MBmd5sum: 28010d3724e9effc488470a961fe39fdcurlwgetcurl -o spaceranger-3.1.0.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.1.0.tar.xz?Expires=1760484693&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=c5SOtQxzIpBXceR2uoBvoveuIJI92pQeAg3yY0oDe2R2J25lNt1BRX0Nrgnjf2gvdK-ytAgYzU8Z0bCKeu5hw-6dAT5H0LSZA~6IJp0JEV3OqZTSrta6bMxHUvr8NxydrvGW7PIX0aauqXHZsWHPJBhUmRDLb-y~ACUSF-HZdh2LFM3sG8bnCY2KoXfz1vqGcg3hLQQizH-SVw5u2t92FX~YXF9sfWG9HRMyD0u-3vSuNwg9cPcGZzDbpXkpRkTN8McizBSeDbYIV-g304jVYd5eCwnSsCmIy0AfMeJl7hGpBUNcJ0UBaCqBfnTt2qSEb-K8g4aqz0qNrI0ggVo5iA__"
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Space Ranger 3.1.0 highlights
- In Space Ranger v3.1.0, the pipeline has been overhauled to significantly improve the CytAssist to microscope image registration process.
Space Ranger 3.0.1 (May 31, 2024)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 757 MBmd5sum: ae65e7ffdddbb966277b7d1776f8c63ccurlwgetcurl -o spaceranger-3.0.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.0.1.tar.gz?Expires=1760484693&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=b1YE7c57tvc6-qrd-2bOtsoY~Y1DsNW19pvQCakKUc2lbGrFYsCR50hoq~N50QOydy6wn80FRhtJjX0m52Zo7FKyyFfCf~hXM0oaE2~QourUY5x~7rmczWYG1N9NjkOQeb0lP4zcrKN6ws94nx0VnCqH1Zwkk9ADeprZTpHAr18ETHcTIwcSATMOJJ7ii-mRowutWzOQHWsUUK2VlxUQ~q4doX6R98BT89nQtWp2o96O1eg9E0RTBtCNh3Jbptvih78OOsT2p7Zk9g8QTH9lEeYrLIWzsahdUmjzQR5fTcN1dZ4Ou07dQ1ZQFtxEgi5204rEy6vfPiHpKKHWEvP3Jg__"
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Download for Linux 64-bit (tar.xz)File size: 481 MBmd5sum: 451495ee2074ff9adbac49ff8851ea1bcurlwgetcurl -o spaceranger-3.0.1.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.0.1.tar.xz?Expires=1760484693&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=EUpzQh8uk6pGv2O6xSC4aSw3jhmU7T3jT~GzSMplbs8nt2FwsBu40NVcM0p9ex4kFfob1qgbsDQMI8twIuaFL17a~~x~4MJ3zOlF0sbCBHWsVDkfSbQSFaCKqJHhmnTGuvUSQ8-Mswb6SdhLN~eoksDzJt1knNCigoQEvGGDBW~4iNuk1XtkjXGZubncXBK7Rce~MVYSPjdU1WksATvNMOKw4A0OWsCEuhqqJT~O3DRuE0qMvJwF0fWwELEoiQZCdgX1hSy4LH9EpLzriKbIdwfUV8M4cw63biwIcPuzgEZiInVAdbsLc0-b3n0-NmixICokwKQSbfw2sPjykTdXgA__"
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Space Ranger 3.0.1 highlights
- Space Ranger v3.0 now supports Visium HD!
- Space Ranger v3.0.1 includes bug fixes and other improvements.
Space Ranger 3.0.0 (Mar 25, 2024)
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Download for Linux 64-bit (tar.gz)File size: 795 MBmd5sum: 19f4443f10cf94aff5768bd8968cb214curlwgetcurl -o spaceranger-3.0.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.0.0.tar.gz?Expires=1760484693&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Fsydff6psKY5OwcFOWyHG6WMJIXwR4ahF7Cb~~hwJ4P~8r2aKcgr6nooAe8LR93qGTP7ug9EI7rF9KF9lpqMZvIEkpfMMhEK8oAH-5sSlBZy50Xoj5PN6d4rtDYkFyIcFGjJHl7E7hYV2yCjFUwnutDShlgEk2UNAZOdSTE-XwXJjYDV7m8K0onCjHABPFEZS7eloIoPfOMjDCT3rHTmtxDZizlCCSCX-r0mpswnXg-6utMdP8-CRndg98FwBEndgkitbTSx0j~M16RkUpT7xpn7lwMqFBrKsebg~~J28fedb0FyMGGCSS-xus3dFMF5XtgtVNFF85iMWB8XlxAoGQ__"
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Download for Linux 64-bit (tar.xz)File size: 507 MBmd5sum: cd02b83fe849672066c40a1734819432curlwgetcurl -o spaceranger-3.0.0.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.0.0.tar.xz?Expires=1760484693&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=bvf6oCLSZkWYJ3X-OVuyHkGzpmk~14jeM1g2Rt6v3-6601~VYQy0XmIrCt0qQ~bb3JQCgQzXty4fA-fKwVmpKebsJ~pmfv3KVTQiqGQQanwLYjI5whc1RuviO3Ol3Rl-6ypFgIgYQqXFvWPAYjxRbPUh3ylDvKkkcyrs0jFPkION7mq55bNwJ84Alw5BJp7U0U77hcp~clUvMkYeyRbtfU4IfwOeeb4IwrwDFWXvVvRmPHxPo0nyXs2CbMix8gkyl0Jk-xAwSM3ol1sJJwYTkuNDRtlySvT0gAPbaW95-ClYBW51lYMdCaV-pax3vhmLBvjGYaKcHAdZiC7ZXLLI1w__"
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Space Ranger 3.0.0 highlights
- Space Ranger now supports Visium HD!
Space Ranger 2.1.1 (Oct 2, 2023)
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Download for Linux 64-bit (tar.gz)File size: 707 MBmd5sum: 0ef64524af2735bd2a0fc9eef5a605f6curlwgetcurl -o spaceranger-2.1.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.1.1.tar.gz?Expires=1760484693&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=js3oL~93Md7ktlJLTrEDe7SywubGE0a43ixKbhDuDLUJxbtsMkQCiV2Qa-AfGJfaMVP-RcwnNm1sxqRKmQgAtQE8tZJLwv7tQRxWuDPBbIug3SCvt5F-CvLme~03YFCk~6d144Th30glcUU9nVzS5SdOqAhaA9ymEPdi2n~xs54dnmz8KF1oTMXn0j7p8lM~jhWWfV2ixuXsWHM~BDuHrSFZrMMkIly~8mMs3av1bSEmdA0aNQRAMUezXH8roP2cFibYNYWn06Ur8D66JVEsI6n9~vo8GC-YZa9AdEeI5565aTiCkz38-l3LzFiIL6PgvdOoSvotlqgVZtBgIpvO5w__"
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Download for Linux 64-bit (tar.xz)File size: 465 MBmd5sum: e1204bb11b3589bc5d5af244b51bfc18curlwgetcurl -o spaceranger-2.1.1.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.1.1.tar.xz?Expires=1760484693&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=P51rr5jJ7yMfZNE4GYISK2CYBwNLSuwKtRBM2sQm1C1lTT3KQLf~6mGTpXI2T6HNVhpRFmJ7czydyG7Q59j2nwR61TTj2RGIlKYBGXmv8ZXDTz0tooeZrHJaASL8FTG1QQJ9re387wv9HJVMVNQroSdxCFsN1WY9Dwq4wUEo5~Z2zN7y0ecRhRqEYcFz6DeqdnITHlapTw9OjZJKgBBQ5ZszNv2ZtnjgoeVZroRu4DQtc44RAwRmMC37iAgVhyDRXQ0IO5xkjePCFTyzt8HD9hPAAi3b6WxY8UC6JwYx2Asesu~CCzJGfCtjp5ved8~JtnylzBvQthmFAjIm0IUSRw__"
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Space Ranger 2.1.1 highlights
- Fixed a bug where 8-bit grayscale images were inadvertently turned into 8-bit RGB color images for tissue registration.
Space Ranger 2.1.0 (May 16, 2023)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 707 MBmd5sum: ee94c453c44770b2b69d6be46b948e3ecurlwgetcurl -o spaceranger-2.1.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.1.0.tar.gz?Expires=1760484693&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=B20bw35HucMTQgYbnupjFDHdHxNHFTL8zF4D-vPONUXDVdHBjdf4lCddPx0uMdUepnFeLOkVxII8yaLTnmCb6TuCjRGmnkGenH5ISbQdQe3CplWldlFkvWWcLsXR8U1F-CsFTfV38JM7hp9yqIG1nwStXu6BX54qG-xhLlnGzGhp2Ttvs-wo3x9K-yjbz2FyPSgiUzkS1gkumGoh-CGt9FAnyvxD39-wqpP52PGM9lfsOh0EoW0r3~yoVwzWVcHRBJZ5FdCdHzPo1Zt21Dj~kSBuT8yyLD44N3sp6pFYQ-DOr01QlZY0t7-OdWRYvxwvxMl0NWuo7P8vUNg19icWgw__"
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Download for Linux 64-bit (tar.xz)File size: 465 MBmd5sum: a0d90129a81c41cbdd728e23a4d25161curlwgetcurl -o spaceranger-2.1.0.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.1.0.tar.xz?Expires=1760484693&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Ro2~OlY-7pdymcyCaHMIyIHm03vXNmLrx41NQnXY1~S33eapTC6dZMzFx501y2mLwFfXYRbGQwLfub5S1yfrLs--7vn6b8yxwK~aFAq4nf9b4x5eqCORYexQNiZAa8aWRpmJRfuAmiF5G11wU4L6Ry8g38YQf1ZniEmbo0~ahzoEKI8FWrKoyLb8BUJ5SH8a9~XCxH2kkck2NZclVf62WZ3g2aLY9XljYq-A29cs2hqQfD5FJIj5H9CE~I0SQA8Cs98tHeUNcm7qSqoZ737hZqS0GCe5KWnhahL93mw8nejHK9VHA7606JrRFHxKu7tVmE~TC1gR5Joq3V1rRooxWA__"
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Space Ranger 2.1.0 highlights
- New feature: Gene + Protein Expression on Visium CytAssist.
- New feature: Reference-free spot deconvolution.
- Added support for bigtiff (btf, tf2, and tf8) image file extensions.
Space Ranger 2.0.1 (Dec 7, 2022)
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Download for Linux 64-bit (tar.gz)File size: 664 MBmd5sum: 26151804338ae4d4b44151232bd64b50curlwgetcurl -o spaceranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.0.1.tar.gz?Expires=1760484693&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=acrPxgdq6Ye3oNEMHub-SDg1IhVUCqPGW84gNCypX8NbesbJoEduHDFgfWrmd9MN1hRvlpZiaWknzuky3A4fTG5lU4009aSmNz6DqJyXGhpXfuZYw5El~c1uxZS95VfA3tLuQYKHROWhPv4cHxRFGxJ7sulEF161Yf8ZqpSpq6ZUL91xI7VF4T4q3RQaDYp~xkqo-uOwTyiv25l-MxsmVKQT3M9lnYUFp77seNhJacXyJjEQ8bV3b1O3o37opEKMgDJKqI0uoDN-W~LvKjJCEr1VWzAsct6jAojvag~fVFFlHHyfYU37LIeikImk-3-OcReFlnchBHZsUKf1BAG5wg__"
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Space Ranger 2.0.1 highlights
- Reclustering workflow now supports generating a UMAP projection in addition to the t-SNE projection.
- Visium Image Manual Aligner now includes additional support for images with difficult to detect fiducials.
- A new Spatial Enrichment table which allows users to sort and filter features by their Moran’s I value for Visium Spatial Gene Expression is added.
Space Ranger 2.0.0 (Jul 18, 2022)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 662 MBmd5sum: aec9ec128c7bc9fbf9fd6d31aa390d4ccurlwgetcurl -o spaceranger-2.0.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.0.0.tar.gz?Expires=1760484693&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=UUazcocYrI4wUpnO8DUlw0p1aBazaaDVGKIhMC85jZwBZ7vokHwgN5t96k8TCmhYKPN3JvJs~7hM9Nw-S6LCxkpxqUDzJv9Bf7ui62yC7xnAtSnkFXG-BiFR4w3lhUwsVOFFjHAmtrt1cXCVkNYw6wSaR2iMtLqPRQX38LDosnq-qUw1t-Xa-v-u66Tl~j94PIf6gcQKYuB40cm4QiTZ-qpOICt--cT2bYmrEXp1D4RM7uq90xssPraQzD9oYMC4-A0ibdvUjO33kFEoXleg0mhE01AYg8bFa7LRaqghYJK25QhW5QXJlgYb4k7astxztukuOEKBhrpNNiZn28~4dA__"
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Space Ranger 2.0.0 highlights
- Space Ranger now supports CytAssist-enabled Gene Expression analysis and includes image registration between the CytAssist image and the microscope image of the same tissue section.
- spaceranger count now quantifies fluorescence intensity in the image at every barcoded-spot location.
Space Ranger 1.3.1 (Nov 1, 2021)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 1.2 GBmd5sum: c2eb73125d9ee731fa825ea3734be1b4curlwgetcurl -o spaceranger-1.3.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.3.1.tar.gz?Expires=1760484693&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=oLwEfsatX3ektAekFhtAnlGQPhPWQHycaywkGvP4vIka6VbTo0AJpXdTiWYVzzTRV4doTE~KlBUfx-Kzr7HDEPldItfGWEA8x4XmbAN7~qm1CKL64P1I882fLR2D4Htr7Dynr0iCjfo-r9xYIWoqBBnN9NiLoTC8hzda4GJoz4MUwzTx-zBW7yzBUB6M3XRTmEV58tFPBBH3oxfv2qksWyzBu48EWBVilsGdNgBE96BNo4vuswRf7i5JcXQ6BCmp21syljD8Ih2E6XdnCj0B4LeiT57o0GsowEYuLHXPDy9L-vtGQhhHXJspAwef8XiDMoQ5t625G9Hudd1zNiPuhw__"
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Space Ranger 1.3.1 highlights
- Adds an alert if image alignment would have produced a different result if the --reorient-images option was specified.
- Update warning for low fraction of reads confidently mapped to the probe set to be more informative.
- Unsets additional sysconfig environment variables prior to pipeline execution, which may otherwise interfere with the pipeline conda environment.
- Fixes an issue with mkfastq when bcl2fastq requires LD_LIBRARY_PATH.
Space Ranger 1.3.0 (Jun 9, 2021)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 1.2 GBmd5sum: ede7f98db5adf7785e35ae0508c48f74curlwgetcurl -o spaceranger-1.3.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.3.0.tar.gz?Expires=1760484693&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=DambePZSvknzSbn1qKmpTEE4-m-M3Y2ovIk96TfUXs8W034wZzE~Y2rZFwe8eslcJDatanXgbHoGy0fq-Kb6ah2WjYq9W1KJpEcVD~065kT4XcI7Tp8EgznlKKt--2UaepkK5QGjGng78OzYqD0wwMP2YnORj4dJXO7NWPyefgoUR31Gif9JqK-iSQBnrcoCiVIQSs6VvsVYgPZxDK6cUmh-AQ6tAi4rZE5yLdV9MoQmCDSYT-ws7cZsEHxxmxENMGSYW62l3Fa9lQro-Q8QOrUMNTV19U8BKbFFqsmCeMSBDgcnL8QZiUikoz7l1t5s98lTgTUUx7rJXDwhUaSeKA__"
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Space Ranger 1.3.0 highlights
- The recommended operating systems for Space Ranger 1.3.0 are CentOS 7 or Ubuntu 14 Linux variants or newer. CentOS 6 and Ubuntu 12 are still supported but have been deprecated.
- Gene Expression analysis from formalin fixed paraffin embedded (FFPE) samples is now available in Space Ranger and is invoked by specifying the --probe-set option when running the spaceranger count command. Space Ranger 1.3.0 or later is required to analyze FFPE data.
- Space Ranger now calculates the Moran's I spatial autocorrelation metric on a per-gene basis.
Space Ranger 1.2.2 (Feb 3, 2021)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 1.2 GBmd5sum: 3280a085714ce7c894dc14b76312bcdacurlwgetcurl -o spaceranger-1.2.2.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.2.2.tar.gz?Expires=1760484693&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Jc4EYSOgPWB1EsObAMrk19F2A3Fn-cu7JCZgN9CiXXZ8jCjaXwX80tyRuEcxs6Uj0wDWTmJ6T1U7da1mMIQ80KwG8jduxkM5u6B9h5Rp7vDdIbb9FU2X6Z7aXWjiqDKoZ2Gu8zGtxJ~wAtOJA9dWH9F97JC14FS83-QjAzI6daL5yqhVrfnshrN4V9S~GFuf44N3q9f5JciU~6U6GmcbMEFGkGQvLbohB62jISovjdxpj1P5wvSMECpr5NJQfOamU4kjmdY8w0eiagUPqxm~jlgYJ9IYUgQvpsTAVodPicmSEI~G9QNvlVbCjSSxtedLHGInZlzOso4sqPFjTFcpcw__"
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Space Ranger 1.2.2 highlights
- Adds support for pyramid TIFFs, or TIFFs with multiple pages of the same image at different resolutions.
- Fixes an issue where targeted samples run against new references would fail preflight.
Space Ranger 1.2.1 (Dec 10, 2020)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 1.2 GBmd5sum: c24ecfc95c5e4f1c268354c5934da98ecurlwgetcurl -o spaceranger-1.2.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.2.1.tar.gz?Expires=1760484693&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=BVOww3KJNNvS~206lS7B0nIxK5pje57LiJ2YswBunqu6hyyU7rNggyKH0AXUq8RWxaHD6pzbb9BbC0MGIUqhXK2OPp9xsBOKX53Hu8lHJxgYnm91yiEPMoJGF4UONmxfFhRw8CaLubMXoplSlOKCQ38RQwVou~Zv1esOMgMTmO2XjpdTaObjHbQBeKxGRelNF6k7M6bEecKWYyviLOAwnvvbGk1vAjpCFXdEuNVN5X1Vj1mRfhnrQNFMMradUIxOpirkjiKr8KMhSOUj09~sk7a5WQDwjzD60BTSAyuZPKaQpqAEPGz1u~7E8gQQSxxoxq31LRGYqMV7SRfUMJQRXA__"
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Space Ranger 1.2.1 highlights
- Fixed an issue in aggr where files would fail to be copied on NFSv4 File Systems.
- Disables multithreading in mkref to address an issue where mkref would fail on hardware without AVX support.
- Better error handling if the pipeline fails due to a missing .env.json file due to an incomplete copy of the application folder.
Space Ranger 1.2.0 (Oct 27, 2020)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 1.2 GBmd5sum: fc21902700779111afc3c813bbb0ff5ecurlwgetcurl -o spaceranger-1.2.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.2.0.tar.gz?Expires=1760484693&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=B7KnxU1ut5m3DOSIw~gaIppvF0uQ9uQMRrHnt2H9gSUF6bCL5jGRXUgDisu8JMwhkCln55za9YEuIj2tbfDT-hip74W31cWPGkXWT794BITsOvXCZyt2uyulnve2eU4ALXTVgxMm~2O2lzj-gzJ0b27EpWjS9n3ehXcsOSVV8hwC-iu~2o-SU4o4K~VKUHweq6X1Qvw~F01YrRBH0YIEd0vAARz-Bv4KJkedg-74FIGFOouPPDAmYDrGwMr1ex055jO09B09~Br1f4kwY6XJmof1woBFL3jeAUqryHIooX0th~C1j-eMNwo-6Mxyd-fYbdTr3lQVYqPf0efwpJRAjQ__"
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Space Ranger 1.2.0 highlights
- Targeted Gene Expression analysis is available in Space Ranger 1.2.
- Introduces the new spaceranger targeted-compare pipeline for direct comparative analysis of matched parent Whole Transcriptome Amplification (WTA) and Targeted Gene Expression datasets.
- Includes the spaceranger targeted-depth subcommand to estimate sequencing depths appropriate for Spatial Targeted Gene Expression experiments.
- A new command line option, --no-bam, instructs the pipeline not to construct BAM files.
Space Ranger 1.1.0 (Jun 23, 2020)
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Download for Linux 64-bit (tar.gz)File size: 1.2 GBmd5sum: 708b93997295db31bc457b3d9af79ca2curlwgetcurl -o spaceranger-1.1.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.1.0.tar.gz?Expires=1760484693&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=eGemyWH3h3tiYt21mYa2WBLKRpXyms5ThW-kzfUKGGg11i~X5O30~U0DhQ~dGQdJaU4z1kD9~g~p8BXPH4~urp-pyM5Yagh3fhUVhoA5XJwhKygPeGvG5-ZgNE6fcXJXrZg5mADNuClUlypH-Ts9cEYKUPVvDa700eTSuWmra6A3zO9a6gZIz2zw2jvvqLLVDF4Gk--EqC-EJjCD4-8HFntxJTBPQ~d-ftH8dNyORVZ0wABAoZVuLsDaGwOES2bKRGjgFdyBSooBywTSggYvNZsCTedEZ31xTt3fyTrL8l7PyMa8Jf5Lehjh-rabqL6fCZNluwAJc3sMnlaCieQDzA__"
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Space Ranger 1.1.0 highlights
- Support for fluorescence imaging input such as IHC/IF.
- Aggregation of multiple datasets.
- Optional automatic rotation of slide images.
Space Ranger 1.0.0 (Dec 2, 2019)
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Download for Linux 64-bit (tar.gz)File size: 1.3 GBmd5sum: 5cc7fb86d0cbff7df687b11575efb7cbcurlwgetcurl -o spaceranger-1.0.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.0.0.tar.gz?Expires=1760484693&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=T2-sNO~dlJM8IW5PXezm~9QITK15r5DNjZIztoWckLCgrLVn3YjJQ8JQn3B~46TP3lRXGtLyg0glR7vQUUXZO9kT-4A~9TF5l1MUi99hOeQ3a26aQe-lpmIwNRZTNijtcyzxN4pmk8MG2gfKYwSJy1IhUt0wptz72si0UyTMR3nG~jgoXDpK9tNh1CvFVCZPseSs2n2dhvhi5gxAgQ-OoJWXVJkgfHojp6Tlj0PHBWJbnyP6ezjKWUHPlWTkk5uhU~mkURa8kFIJhRrwKLRL2QHu84ujYCXgUp3M6WTRjOPqt1VOsV82rflsqnTgk8IIO1h1Zvb~iQIqCfzPPwkWSA__"
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