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Previous Versions

Previous Versions

Space Ranger 3.1.1 (Sep 9, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 827 MB
    md5sum: c0b9a274d7d3692e28f086818eb55e62
    curl -o spaceranger-3.1.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.1.1.tar.gz?Expires=1751440647&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=ly3H8qsD54gdY85rKTOhq1CLi5i42JTtock-EoWhg4kl7jVtZf9MJjBxV3F5Q92XBedaaYBRQMSp5e3Wz9tGHlVz1UMHLnFqFYXSaDkhexacM26oTvulL08RFUYH8kZ~a~AE4qc~u05ZSCso-rHEwdUeakN7nc4nsz-1BYF0xra6DANyJ0R-67cLtiK5vVSjMNMuUDqLuc-gXFLtQatYOv40nLIRfqTJkRtwBgEbZFQvYVPMREloNm4D-FHYpvhdADIKlXc16elGolRhb7FJY0yfI7OYhXcDzDZ9UYLF9qnhkoszOFQh-UGZanVv7d~70b1X2InF~ZABQZFQ1qrGtA__"
  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 527 MB
    md5sum: 4adde78374877cee92d056b903a77759
    curl -o spaceranger-3.1.1.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.1.1.tar.xz?Expires=1751440647&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=D9gOfkPkLL9ygMDI~Ht8f3Yu~rqjAQmrW5m3WvXY9-6tjULvIoNmJ~3r8LVDS4fOqoqqr4icieAC9EhbIL-mRgZCtsmB2Wd7a0K-s21mCV-mFzT~vuT8F~SimyhkJEQ87rfEzZAmbbNM3NYqI7Nu3iaLaoFwp5Ch8lWBBKixe-CIeuZAwqyQ2k-j3GOe6fLYct8fwDnm9sQLkkqMV2KR6ogWc8l6M38UU9GMjgF3cLSFx6xnLp-kqGxjsulPpcnlzAmZm1~BC2S~S0I0-ZOEql2VesDeDvwMkGNPrv1ANy1e12QgSEN7EJK1n7HWqA5WespiwKSfJk9C6ieufDD3AA__"

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Space Ranger v3.1.1 highlights

  • In Space Ranger v3.1.1, the pipeline has been overhauled to significantly improve the CytAssist to microscope image registration process.
Release notes

Space Ranger 3.1.0 (Aug 28, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 827 MB
    md5sum: 13a2c82adfb1f1efb737e2be121000d1
    curl -o spaceranger-3.1.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.1.0.tar.gz?Expires=1751440647&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=DOyOnwc2ptAB5afab8eD8e0h2h3cKJndG9lsnWO~nxQE5~ZBpXtBr5m4Y9nj-hg-dbxUwHB2xtps2WS2DwJ6EFC6QeXKCidYEoqtx8VjMfZgc5vjLDNzjphY2znhlB3YdJIHJcumeBMqQqVj11ATmvqjC9Ip3A3LYZwSS~L0D-4iwK9bMw2EmvXPwonoY5IfM~IFBRlNkCl8GkwJYiE4y6QUOY8WxHooy57EuaQajvFpgxDqsQhnyaosAFWsMbWqGPz2LF80rdfMrW02I84osGk0ZK7kLkHdZZkYG7Hxr76AUTfmafrtYl04Fiym6tq9g9pkaQOCHimzJidLkukY~Q__"
  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 527 MB
    md5sum: 28010d3724e9effc488470a961fe39fd
    curl -o spaceranger-3.1.0.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.1.0.tar.xz?Expires=1751440647&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=cGXeZ7hinZbdbO8bJDcptFRTzfYMHDs07Z3I1tZElQx9V9m57xBZfHRFLRaPoyBIoPq48QF1PDOmYO8BkC6Aml4q2wPAO3Aa-T4lW7I8FrA6C6Je67LtFU1lL9QS9RqXNGSPxJnDCme6G8ubH3jZ9vcoKnIUD0FJMx~6ZdzAHqFppI0d7GsUXJ0JeLj6yRxaq4c7A2vcMqaTJyHCVcLIEG8iaKvLRQirH-TnBqMKh-6gXLhsC8JNL9WTsqvxC6fuG9xv2j8AW-u-zn4jm0eG-229lGZUM9KHkxx-ULt9llm6f5wKg75PoJtzVoDDa1PTECdNngeUR57ePSyOYRCmEw__"

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Space Ranger 3.1.0 highlights

  • In Space Ranger v3.1.0, the pipeline has been overhauled to significantly improve the CytAssist to microscope image registration process.

Space Ranger 3.0.1 (May 31, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 757 MB
    md5sum: ae65e7ffdddbb966277b7d1776f8c63c
    curl -o spaceranger-3.0.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.0.1.tar.gz?Expires=1751440647&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=ev2RnsL0NFPLim6F7kRoodasmkC-MWGJjmSLyC~A4Tgpf4qYFk7KXgwCvXekNLHo~cIPwBerp3YsjCZ6yl7fQvQsgpfIJo18eOZshI~YYuYjI~egWs9uuzvR9l6hXwCWIeH3vMi03oLN0GvNv4D2oGJGT7R27SM3Jl~Lp2r--xREVf9e1G15q-vdeOc8dmPQ~bdEb3I9t5Sf3l-~kDKsIOUYeUMleM96zckyF35ovZaXt3BwgYVoh6tO2xHcYodVbbdtlk8p-qi0fd1MwJOEx0ChnhO0Q1EcR~60jICEh6YFCmxN1ca5gZtV~uCO3leJ-Ah-bt8n4m1-rsSOBoGuyw__"
  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 481 MB
    md5sum: 451495ee2074ff9adbac49ff8851ea1b
    curl -o spaceranger-3.0.1.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.0.1.tar.xz?Expires=1751440647&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=NKQCBya8GQQ4p8Wext9LPXQOo-z1v-FIxnudvT2WN1dsbIg35XhaxQvZ8~3hXRbC6-CQOK3jVJauMoEZW2ACvM0picr-jSbHBiTr3mDhuQF6vwm7APbzZnNdZAVsYSjBwD6F8~ySLh3tyFBqsV2X4tZ06NgQ-QbYSrnjjPKfWLb1Ci7aFWWXfZS7PK8nswGdwpBSlGKIwI55PQ-39ecvn88M5KfvxhzpWV4cYu47xv5dElv8zfAauIJptarMC4TsWlaRU8bN3sIl3adxkfpvvodcL5vGfZKc~HIMw~hrRkStI0Lj03RkReUzP4qRgWxedJVHJy3om0VxETIrxyax~A__"

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Space Ranger 3.0.1 highlights

  • Space Ranger v3.0 now supports Visium HD!
  • Space Ranger v3.0.1 includes bug fixes and other improvements.

Space Ranger 3.0.0 (Mar 25, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 795 MB
    md5sum: 19f4443f10cf94aff5768bd8968cb214
    curl -o spaceranger-3.0.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.0.0.tar.gz?Expires=1751440647&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=cxsfPI4~7EY8w98rRNR5x9f6NPWHzCV1HgSOI4jipfqF-r0mpTiNCvQ0fMnSzElC3rQ5z6pPvsgDDWP91ymtoFhEFNdRXBg65GPGUNKFiaZPDdXvbQlQfAt-lQmzLUiPlGIgS9WUb8X2foDpYE18AtjNvznPhjuaCAubH7pfi-u1VCW74ngdRZ294JKGZtZRDHVf21K4GH0tVKdpj9HGt9coLlM-fyPKWkTMb8DtVE9f4SlYTq3m6xSjyrBzP3J8~-55EFu-vbj-sJy-8dRjYjJtTIkGKPSVg214fBfc69xhsJN7LKTb~2bUPF6w5NmQ77h9Q4sAsNfE2XuEvlhH9g__"
  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 507 MB
    md5sum: cd02b83fe849672066c40a1734819432
    curl -o spaceranger-3.0.0.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.0.0.tar.xz?Expires=1751440647&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=RSxvBQ51CXQhrjMkFP0Qsjrc19DhG9Nhv8TrCn2qCmuyWGcOq5g1vK97zAg37f2U9VJ6i0Ql2aWekHMRdWT8d8DBfuGlzqg4zjVvYtPknFxZllwNq4HQ8NSDjbG~DM1pk6b5Epf5iuglmrdzWMcm9X0cfUqrbRJIeitbp59lJ1tlnmElaao23IkhKua9VKZtX5DyGnZiyJC1yhZrns7nMuaHFGQV5Y85Jejtk1znHIfgX6AJDGD8wA0NoeXLDP6K7FVrYwlZ2GvN9tMovahKuklRG~pAg0kNTlBr6E-MjJ8EpFjtm0iJ0QZjBstHjGa8lrw~pK~OWrtJABumc-US2Q__"

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Space Ranger 3.0.0 highlights

  • Space Ranger now supports Visium HD!

Space Ranger 2.1.1 (Oct 2, 2023)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 707 MB
    md5sum: 0ef64524af2735bd2a0fc9eef5a605f6
    curl -o spaceranger-2.1.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.1.1.tar.gz?Expires=1751440647&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=iBKpsztWLlFRNHPh5q1ZISFIqNNe54yhTyUB5gQ-zbN-LwBfBMuZdbCTTXt1zb5VSnP81n6tAK7Q67qkdoiSJjS1rwRQ1tOrp238lhcdl8isRLUE9RnnhZai4MzNVGuVXBrkTK~HtSsreXl2l5yltps~bnkaJUqEn9JQyBW7NOoW5t7HH8V~cpD49tZov6gEjSVJdmcIbeGFJ~ajidE4aZqzMH~mPCsLkpsn7305mrPJEBuX25LoHWzTFnbRIZvkvwPfRgAxQ5nTPOp7VC70LJVLvPRQptIY-SHfvc7NfbhQq1phVGxk4AOaGcoEKWf683eq-PHgp0SK4HP5UYTOdg__"
  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 465 MB
    md5sum: e1204bb11b3589bc5d5af244b51bfc18
    curl -o spaceranger-2.1.1.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.1.1.tar.xz?Expires=1751440647&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=jS2sHbdXSYFwcSgXtN-SinHbVKrI4M5OBS1NqmkUiAM~s~TWqYYw5e0b8YUO-bY2fAj-uUCtHN~VvcOVBNDHNOGW0QJdGGxynWw2YzhmefVX~DWhpc0gH1~40rBBKpJZnLWoR42wArfxCBoOgwTXXJevc2qmSV~w59r2L9RfHC3heHIqMA-FsiuQCWgDgSU6foLpDApp6iyzTwRKKk~nu4zc8zVGsFv0c7yT-mptOZzxSIhZQ7HJvQQoXr6sraR6UW97LMXujUUdxjKTvZC9vi0srM3j4Q6X3r3Jc4UljkETND1oM0kGv4vpVvoyqYUMdDd7YW39yIIjzWEpyuKKcQ__"

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Space Ranger 2.1.1 highlights

  • Fixed a bug where 8-bit grayscale images were inadvertently turned into 8-bit RGB color images for tissue registration.

Space Ranger 2.1.0 (May 16, 2023)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 707 MB
    md5sum: ee94c453c44770b2b69d6be46b948e3e
    curl -o spaceranger-2.1.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.1.0.tar.gz?Expires=1751440647&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=MVQtVCbEf65nWZ5SjJMpLTs6PO5cXgVyoGOV7ULQ3GK8t2cTtOiXE6KTJrO0Vk7ousDnwBuMIpdGaViUnsLwwQfyMpfROMH12Y3LDFtw-fjvuDmE~6IpnOZvG5JBseq0DpCGh4vw4~AznTAxcAfS-nSAXOZYkOhjAek1UxQkrNboUE3ovy12c9WXHVQw40VYwFu1N2vok2vyqBGGxqWkUGwFEeqsrOqIlFlk876GwGKbpTChgP0D7rSTQv4Sl4X0kdZ4sAxH4KQC0nBpXO5B8dSygkxPtJxZI~l8AemztoRYEz3oFMmXaTZjhD-6~v4D8Mh9spHkSYe1oEjuosKA3Q__"
  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 465 MB
    md5sum: a0d90129a81c41cbdd728e23a4d25161
    curl -o spaceranger-2.1.0.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.1.0.tar.xz?Expires=1751440647&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Mf9NHsg6FsE2nNDIubiYbqgmBauPgGuQI~ziQ~mj-HmS4U8JehbtmWP1WvAyFJL4fjZyf9ZnnMapF5Zd6gj3ePyDzP2f4Q3lUy~YSF6BmzGP~7WlnMj06HL0UQQY6zctDhG6h6C6E5r74fs0N4IJUANKCZUo7tQRza7Dsrs01XikOSZRECeX1h5QUFBynbRuGc0KyZrdnaatXFH~ZNeuKfIuK0tzR82RLcrycXQTmonAv~7q8oRT7-tG5~Ewu1NMwFtYETUkqZheb~~r4v8hxMjrch7F~PWp1t8WOpizqmgNk1oo4XpJ1CCJEFltVVQM~Pd~0obSQbqrHIJmxRY4Bw__"

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Space Ranger 2.1.0 highlights

  • New feature: Gene + Protein Expression on Visium CytAssist.
  • New feature: Reference-free spot deconvolution.
  • Added support for bigtiff (btf, tf2, and tf8) image file extensions.

Space Ranger 2.0.1 (Dec 7, 2022)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 664 MB
    md5sum: 26151804338ae4d4b44151232bd64b50
    curl -o spaceranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.0.1.tar.gz?Expires=1751440647&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=ac8lpjXIwviX7xLXEp~vdov3Bec3ngTcKCDrpFd6sQTLCVxdmfE9IrQ6A9MTgmzCQnCs5NmS8D2Qy1HkPV2c-6SoSoOwzDnZmvH5~kJIQ3nVl~TzgpVlmKt0vMVhR9g7sCLsfuuaitOF1fa-QnsT1ar8~m5PK7KhRhEk1EYTrmQZQKfc4rXt80NNuyU96ev1nQUTRT2u~fdzUYZDm4TWz8SxZXtte2zjwUfpHJU8LUKd5XmGQInZvxSObM9HSmyAkxDAmylfofM8R-lktj2tNM1ue0KG44ITSOs58w8RAPu4j3-PcMarzmO2sjOCp07iu9sfM~frNnHwS-y9g-YIrA__"

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Space Ranger 2.0.1 highlights

  • Reclustering workflow now supports generating a UMAP projection in addition to the t-SNE projection.
  • Visium Image Manual Aligner now includes additional support for images with difficult to detect fiducials.
  • A new Spatial Enrichment table which allows users to sort and filter features by their Moran’s I value for Visium Spatial Gene Expression is added.

Space Ranger 2.0.0 (Jul 18, 2022)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 662 MB
    md5sum: aec9ec128c7bc9fbf9fd6d31aa390d4c
    curl -o spaceranger-2.0.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.0.0.tar.gz?Expires=1751440647&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=VgmriUprS10mRy1hMbppYZbe3CjwaqFhb2yLx7ZKmn54zP01QEmwfFIP4i44MN~d5kI2Z2F2DlAoCQhbSuDcgpX4f7eq8pTA2Kc2hAqUSfhuEvs~uwZa~96iMwLf4Uxezipj9tC3P8jISik2i9OwOS8IscAxcoSgu7WdnrKm6wxZQYxeJ5YKgkXT9Ix6ifq76upKT35L3A3uOG0VhOdM5fPzrpO1ip~1eXNzzgtOZfnEQHO7JPh-2RMNYEZwfh-slXlk4E0aTq4~-qcugLDwnmZ4aBJF4Hr1rJM2Sy6gqqo3Eq8LOA~fDbGWxeMddNu5gR5CyS7XPQYFThFyZEhHeA__"

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Space Ranger 2.0.0 highlights

  • Space Ranger now supports CytAssist-enabled Gene Expression analysis and includes image registration between the CytAssist image and the microscope image of the same tissue section.
  • spaceranger count now quantifies fluorescence intensity in the image at every barcoded-spot location.

Space Ranger 1.3.1 (Nov 1, 2021)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 1.2 GB
    md5sum: c2eb73125d9ee731fa825ea3734be1b4
    curl -o spaceranger-1.3.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.3.1.tar.gz?Expires=1751440647&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=jj7RWbwSGv3M~U-slP8x1aBT2Gz-xufv3B~qC0baoCOV2AC26TNcuLwxzNsL1gC~ZJrdWy9-1IpKrYiYJ7-DR5sAOMArKqSebCSD-bDtnpLF-RrIWfFkK9uJWGU-axNszUUSoqdmn9MItlWyzLVqbhshR7gfHwbjD4ML1mH6nJK7TzKcIvAiuI3JNOuxYzjzH4bmJvrjDg1m-qr4-u1UPTnApi-eJbPYB5TwE7QUJQEpddX06xzzV8dZVtkGuogwn0C5fIiVv11A-HoJqTNuwo-BhZounxfqAzDWNHoiXn5UfGbgn-oWo~jUjpqizaukuTuxXximty-zeYPFc4JLKg__"

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Space Ranger 1.3.1 highlights

  • Adds an alert if image alignment would have produced a different result if the --reorient-images option was specified.
  • Update warning for low fraction of reads confidently mapped to the probe set to be more informative.
  • Unsets additional sysconfig environment variables prior to pipeline execution, which may otherwise interfere with the pipeline conda environment.
  • Fixes an issue with mkfastq when bcl2fastq requires LD_LIBRARY_PATH.

Space Ranger 1.3.0 (Jun 9, 2021)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 1.2 GB
    md5sum: ede7f98db5adf7785e35ae0508c48f74
    curl -o spaceranger-1.3.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.3.0.tar.gz?Expires=1751440647&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=h3xyJiXDiiXYs93CQUEIkP2L26Ea1cydjgJAliE7QDCF4oTR5yoEj1SYmTjzsLPm~sfvPDGMKXzdCTwvRWiLJmFSwaa9yCNPn3Nbvn2sGnehQcHN4KeCwBNY5FUKYH8QZdsBgWqDv7u3oAsV49Y4yoCS94narI1~Lpy1~bZMuJuTqhQsjHo1Lxg3rrFTBwPBaD9UPSaBhvO61-0U4h25QFJen0aU1M7Tj5CFyY6JFTtmz-GQYGRcZVS4M3Q-IK4MuCRdBI0atEH0Krb-KFKUvjXpddPY4f2dNpzX6XVBgr824IAa2TBtb723dIV~AIiSykJFxHDcwQ-UaFO-BfqoLQ__"

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Space Ranger 1.3.0 highlights

  • The recommended operating systems for Space Ranger 1.3.0 are CentOS 7 or Ubuntu 14 Linux variants or newer. CentOS 6 and Ubuntu 12 are still supported but have been deprecated.
  • Gene Expression analysis from formalin fixed paraffin embedded (FFPE) samples is now available in Space Ranger and is invoked by specifying the --probe-set option when running the spaceranger count command. Space Ranger 1.3.0 or later is required to analyze FFPE data.
  • Space Ranger now calculates the Moran's I spatial autocorrelation metric on a per-gene basis.

Space Ranger 1.2.2 (Feb 3, 2021)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 1.2 GB
    md5sum: 3280a085714ce7c894dc14b76312bcda
    curl -o spaceranger-1.2.2.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.2.2.tar.gz?Expires=1751440647&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=ZV2MWuzxlqH4YVvReWuXc27UmCAVCaJCPApEu3HIwl~TppjM1WE6EXhetH9OikU1IXYwzwDYzv6LrrDcWuTbWgd5F2IN8YkbhqIAa1htuTaSn27Ty2p4YZZnSy2HDt~OIP1PYI6qodkZFDdwZa2zTFSWvndLhhqPPVis1~Zc7EGdNRolrx8HmofnrGnuUS54gb5ItaLmZM4xYITHfkzUT2-~sj1KDzsfMVgLJR5yPsjPnBgMVPCNUQpMkMYLuGNr9vX6hPkC~n-g1faD-Kvwdbv6224re-Fy4qprrpO93GkA2NH4aFa0BC1yS~7J3zssyl40OWHtpOQUCD~JRD90Ww__"

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Space Ranger 1.2.2 highlights

  • Adds support for pyramid TIFFs, or TIFFs with multiple pages of the same image at different resolutions.
  • Fixes an issue where targeted samples run against new references would fail preflight.

Space Ranger 1.2.1 (Dec 10, 2020)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 1.2 GB
    md5sum: c24ecfc95c5e4f1c268354c5934da98e
    curl -o spaceranger-1.2.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.2.1.tar.gz?Expires=1751440647&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=aIuxtVAx59WKlEkL0~CXqQJR6~ZChBr5BuRFyNm7ZkimbE9TnvRUMbelouRHM2i1ZM2vz7fL3z0oM~FPDDCzYjcmGVMMuXcKRsI97QRDKPifzi8GqtkLJi8T8jVZfODQgv3ouBbdE95zFE~tT12oBI60Bm1Q7tdBnW6g6smXiAk-wvxR6hzNNuoZFbWzn-piAXD0foawKiGwi-lHdFA23-nxGpl8DK6ZYZJqX2sN2sIMPlVNgekMr5k2FdWXfX9K01tINNjRdw-1QNiNAcHl-L9kj81wkxjZ--Lj6sKtrmZBcw-8K9VDzstLuT1XtaiEkWdC3M3UNbemCtR~ZU3pzA__"

Download is unavailable on mobile devices.

Space Ranger 1.2.1 highlights

  • Fixed an issue in aggr where files would fail to be copied on NFSv4 File Systems.
  • Disables multithreading in mkref to address an issue where mkref would fail on hardware without AVX support.
  • Better error handling if the pipeline fails due to a missing .env.json file due to an incomplete copy of the application folder.

Space Ranger 1.2.0 (Oct 27, 2020)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 1.2 GB
    md5sum: fc21902700779111afc3c813bbb0ff5e
    curl -o spaceranger-1.2.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.2.0.tar.gz?Expires=1751440647&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=agdvfHYG~z~uwMzoGgrr6xBrPn4Jcu~VdTwjzTkHQNPjTVp3Cz3V2XYAmtnvkv3Iay3JnuAFHW3yOMarzq1MXCMh~Tj6YPuSZYm74N1vnqRkmZsp76CIImqPDTYd6ABqzEMUBXM0surNxQvUmgroj4LkEFWJrldHL0wPaaOPC7UkZ0uZWK7iGB0DSzwM~AvtocQy36iaACTPn6aK6hykF0WNK0ZJFyGHKEdpO8ZFu5zIMeHpoSHBTx-I5CLyWZLBz4eMex417FLlFxHAMcCq~darehJFewfg90R6CgzcImVdDOdBT7mJx~lBkvWOAayB6w944sSDnBDYSYT63csJOA__"

Download is unavailable on mobile devices.

Space Ranger 1.2.0 highlights

  • Targeted Gene Expression analysis is available in Space Ranger 1.2.
  • Introduces the new spaceranger targeted-compare pipeline for direct comparative analysis of matched parent Whole Transcriptome Amplification (WTA) and Targeted Gene Expression datasets.
  • Includes the spaceranger targeted-depth subcommand to estimate sequencing depths appropriate for Spatial Targeted Gene Expression experiments.
  • A new command line option, --no-bam, instructs the pipeline not to construct BAM files.

Space Ranger 1.1.0 (Jun 23, 2020)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 1.2 GB
    md5sum: 708b93997295db31bc457b3d9af79ca2
    curl -o spaceranger-1.1.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.1.0.tar.gz?Expires=1751440647&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=dhrWhjs3MCNZBKbSlzvmh53hDpv-Oo8ldkJksVSvuaVtifv7WO8PAbmlmOmAePu3oaODI1ne0Tu2asnh5tZMkc-j4oyYXrq09LKhKk95U0u~ZCaYKpAC6ObhSEkyZIrnqFrYTyMcFAoIa-syqvnKSMMOcEzPQiAsT51ifeNtANBk-0kY5~h4wS3vKMTNxG9puFuaOyIoQO4DvQFiSwKUuqsFvRHr-N5RnXsVxlPFXGi06OvU5Dyp0Zh-FTINPBVKViF2MBeJaTLw98YKqNUcMxJYdy6LvbjaXwauzMmHCqspd6IkxLczlVIxg8iMf5ySq2W8-r22IQNznJmDq-P2mg__"

Download is unavailable on mobile devices.

Space Ranger 1.1.0 highlights

  • Support for fluorescence imaging input such as IHC/IF.
  • Aggregation of multiple datasets.
  • Optional automatic rotation of slide images.

Space Ranger 1.0.0 (Dec 2, 2019)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 1.3 GB
    md5sum: 5cc7fb86d0cbff7df687b11575efb7cb
    curl -o spaceranger-1.0.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.0.0.tar.gz?Expires=1751440647&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=MwsiNmGav0t0g4srwlw5hJkqSLBjsqTXk629UTybrP0WR8ejZj7iF84w0blxnBd1kIS4grd~QHrnvB7NeCthvDG~8Gzo1k1v~G1m9fFThxHztmd9sMKhytMoFoCcIbFrqdgUQRTXoYQ9RVGGS2u4nSvUjWMlw5v8vMwXj2xLgjK9-CdYiLUjBauwknNLt7mztF7GfLwx~xZ1oTemncBQlKTO5IhutXpwqH0LpB2Xs7qmivAccvuLepzSfMEXhG14t9wZ1UDcbu1RHgfxSS4ssV9O8su-9OGEC7tTkuiYbiOa2WqPpvjYh3dKZmTV0iI4asS6sZ~f36HyO4hW0af7FA__"

Download is unavailable on mobile devices.

Space Ranger 1.0.0 highlights

  • Initial release of Space Ranger.