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Previous Versions

Previous Versions

Space Ranger 3.1.1 (Sep 9, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 827 MB
    md5sum: c0b9a274d7d3692e28f086818eb55e62
    curl -o spaceranger-3.1.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.1.1.tar.gz?Expires=1753219801&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Pfi4wOQcyVDEzJCRCZbH~wcDpD5T2S3qgTdz5tdNhL1d6TViSHhF~xDUomTapzyygME~ywElQEw3jr~GZX~BW3YVVs2rTwG~M1yTbMTjPSJG-DCNb6e4Znsp5xNSnM2oLK57ad6LzKY-~sDCF2ri3iLEerdg0iSSw3oDPUKN-MDhEuRiLaui39z~fHlLAtvIBEu-hxCmsQeP1qpEkTGKO7G8-HyXKevyeTmLzZvvYxrSgoqqQb2GgoQOkzspbGRuqkvEqpdqeDa0fMXF0nOUzYJQi0lK5Bn8SKRG~Fmc5-AkkZYf9zQdFXcjgGN2T6CajNjCkh1~2sorBEkULreFNQ__"
  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 527 MB
    md5sum: 4adde78374877cee92d056b903a77759
    curl -o spaceranger-3.1.1.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.1.1.tar.xz?Expires=1753219801&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=cH8sgg-KSE3bzH3YGz2Gjnvw88meA9qTycNPyMfWuWjH~EKljL7muD6Z1mJTCI95PhdwRrf4J4YapQ4sPP4nBTW3CPHUMW7bRW0rpp9piZXpA18mX36YSfszfW8u~RD3XYR-Zt-cNjAbp6D2B02Z8mFuGAv8dD9059kn5QhB3ahYCpUCRqvLwBcCtJMFgs3NrD5YuKScB2IMVt4uNxNMIETzfaVi0WGzwg03ZAs3Y8OO-NYEfHkOgVR0Q5dHJ7DflS4cAvzvev44MmKUTRxE7seemRPQZsGAaUoTUVYI~b90NQ4tRC-r5ZT-AYU32in5oNTrW-2m8WXFqNfhyNfacg__"

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Space Ranger v3.1.1 highlights

  • In Space Ranger v3.1.1, the pipeline has been overhauled to significantly improve the CytAssist to microscope image registration process.
Release notes

Space Ranger 3.1.0 (Aug 28, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 827 MB
    md5sum: 13a2c82adfb1f1efb737e2be121000d1
    curl -o spaceranger-3.1.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.1.0.tar.gz?Expires=1753219801&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Lf20wI5WswWHWQdTQeOvTxjALTzoUiWNlMN2OzNsCWMvudJCrAbZARokJZ93OKAiEB9A2x18r5hKOb3YyqqmieXtx6xw6-j84CFXdJxOVJN1ZeMFTkjsJz2CQ8EdKEWrQua9IBu~KneHUXMuXH~h19Az-~P-iYUeODymhLboFh0SNZrsbp~iMGJIEqfgpwBmjTn1NNCNRJGDFbJEHYuA3afIqyqLuv-aLo-dF0vN5SEj~aeH~2VniLMlj9fOhZkO00OeBsF3mc1WXMPDYHxvYo5xk74NgqpHeiZwKpHi-wt4TKXkSEOLOvmA3kDie44whZk9-RvaVRTnA4l~L3IXNg__"
  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 527 MB
    md5sum: 28010d3724e9effc488470a961fe39fd
    curl -o spaceranger-3.1.0.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.1.0.tar.xz?Expires=1753219801&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Dw4zWAoQ-Lkw-Ll4Ohfg~hxaqT-ReZy32fSqScDZoWScZNllUBtoJsF~9v7aem-OTpEySy4xps2jucnchqh0OTnXlqAlafUbEneJDZIE~g2xN8Dc6W1PssdjYC4Gu0HKoM3ACoa7ZT9MuuIIf9qyhQGB-sjfhVJ4c6agnbVfw7AXv7xg8XexFECuSjOLIv9vCJJnSrG6StL3RJO9baNlHzqOBtHBOkGttkFgr~B-zRMht9kl5U7Zd0EoFZCc4uUAyi50eyb00fDLSBwiV-ulvM4rTF6QQOXB~E~Ziakq3V7OL1z8lBSL8jhNqVFAfjTlMBpM5~TVcVIjY4cJ-nZeYA__"

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Space Ranger 3.1.0 highlights

  • In Space Ranger v3.1.0, the pipeline has been overhauled to significantly improve the CytAssist to microscope image registration process.

Space Ranger 3.0.1 (May 31, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 757 MB
    md5sum: ae65e7ffdddbb966277b7d1776f8c63c
    curl -o spaceranger-3.0.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.0.1.tar.gz?Expires=1753219801&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=M3w4rVhDguCLOg9DQdxH49m18t1TzxnqMhMRYh7st50KMHtIEw-UgE7Vwd8bcTTtdZ~WZaRxe6k3zIURd7SArbjkaxCn22yDv-6BKVu4nS5e8RZ5nFRDRHAsJTY9uLVQ5ZKpepSOXe4jIkEQU6cXpNvpunOs2JEg2bs-xjWzhEqM9zRBSqy0yOmUxpiYaHbLgAJ-ChdjkQjXZx3BzEPnu9lYRI2RepNvH59df~pA47Me9vbhrcrBWf7mpINEWraTgdc6FemNS~qfhvNONJY5rdDlbKfexu9-r5mk5Ga8YW0K-MTaM7j2kXaxvPKxUEZ1ILGNxWHxrfhck5tk772UDA__"
  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 481 MB
    md5sum: 451495ee2074ff9adbac49ff8851ea1b
    curl -o spaceranger-3.0.1.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.0.1.tar.xz?Expires=1753219801&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=dcASaKm8Pwv7HHvzqS6LvhZEYyIoTBH6MhxpseDTH95On1fv-FLMGEviWeAxSh-r~1cCE~cd5TsY~x3mnGoKPW~4kmjE5-XnktWl3ks7IYTxBd-3QQA0gltI78kX1uDHbprLoqiueVnnaFOWJ7dZShV-eUB-BTQXsQYWhXVoSQvjKSAC9z4-Ahlk8ihsPOBn24cLtvvpqgLr9~8Nh6t05BJtWbwO3ZHTzZHsjDWho8DkuQirF75kE7JtfZXr6NXoYOM3uvVOTYg2VmT6sjdl9Swr5RQAYadZp1Swzm6sPl-vpZAndX1mA9UIm8ET2uV1NuUDr4VAH~yDbw2pKSot2g__"

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Space Ranger 3.0.1 highlights

  • Space Ranger v3.0 now supports Visium HD!
  • Space Ranger v3.0.1 includes bug fixes and other improvements.

Space Ranger 3.0.0 (Mar 25, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 795 MB
    md5sum: 19f4443f10cf94aff5768bd8968cb214
    curl -o spaceranger-3.0.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.0.0.tar.gz?Expires=1753219801&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=GmZYLm8Fkh2Y5lNMg903QRbccxVdyi8hTqmrRJgxiEiKkwsXjgQt~0EtJ9oNtr1dLasNVX9Ob8iG9ePKOdGtP6pDVfIWu1Ollox9yaPeutYJnSbyrKCj~qffE0ouU~ZtNQcjCw0kfeHmRzGcbRjUeAIAJujEUZ~1tD9yvY8f47zZMyL27wmHwlAnREaRFrrhIWfCX8miJst-emlIPj5tcVdO3Le3ARRjETIMgEVzuEByLXoGIXXcnBjw7q5FUi9QxcPIFEgXGTRz~gJzjn8JhCk7DVWE11XW4uZuK2xFblhlY~~JJgk3iIfaVfCR6ogux6Y3nJkckBwvqKC3a6d9Uw__"
  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 507 MB
    md5sum: cd02b83fe849672066c40a1734819432
    curl -o spaceranger-3.0.0.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.0.0.tar.xz?Expires=1753219801&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Rs3vzol5A9qz-2J7FGHG7b8-cRqfiAyUlbhDFUo81dSDOnQQUHKcehKv8fnwTYbqCq3Bh6UzBYzxDR5F8be~0X2UdrZs0ti4RbO~~qFozgQnHa4KP3G0Vjklx~yo2tr0oQuj3UA4Ov-Y6gRszSJPSXy~obJBEijUz6O78ldc24HMlusjhi4CX5ptCH5kHjJkJedALN9u8Wcn6R~8y0wTWAjWuswsBBrr1luGpx8vcz-aCXAveBsY7FAV6N90iTa~xh26sgCH8CARmG31Cvwc7of93YBtZawT2m2G~x7Th-3DTQCEkQAcBrqJ19Mq5MZkmxSxQVDHwUKW1XsnKEHRiA__"

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Space Ranger 3.0.0 highlights

  • Space Ranger now supports Visium HD!

Space Ranger 2.1.1 (Oct 2, 2023)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 707 MB
    md5sum: 0ef64524af2735bd2a0fc9eef5a605f6
    curl -o spaceranger-2.1.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.1.1.tar.gz?Expires=1753219801&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=dAzd4GeTuhYlSxX26gyN3CUCFK9BFOwIm4TUt0uZD6EdBZ7pT950Eyvka~ySM5ZpqZE3gxGf6BG0CGNt0~L6XoJGKA83Wg1QFffcBxJqog5dpDAefOFhSfdhFswgnyV8S2pr~AlaaoKt-2vDHW3ehZcmUFQQmG2lYBj-NhBrdgl9K~eAstNy4~Rjxs8Bttsh1NlVpKgnl5b8ATLEilB1E1wQUGEHewjhwh13eA1nec872oE2lrsrPf~ONCmbs6hNQAs60mVp2TUCz5fmL7cEKdfUIllaDnt6Hrmano-4P7DGFCCicID73k3DRKyanmnqtXgEawoYMRsm-RjRwRGM0A__"
  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 465 MB
    md5sum: e1204bb11b3589bc5d5af244b51bfc18
    curl -o spaceranger-2.1.1.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.1.1.tar.xz?Expires=1753219801&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=kVcfAfHYEMKwyhgxJOqNTfbjmL9nGw-Tb~k~SstZ7em9Kw0ecjNQYr6Jp0Yzr5oPdQalpFb7DBFXh9bmvEKJzLt6piGss4r~5nd7~FT~PWI4CgomHRjwr8UzP6iJF1kpfTml4Gx4ECB1-9a05HgS9Blb0XUTHF7qRvTYnbbJzIUS3ulDR7H0y1C0IBq0CbsSAHZFKmTVKyzrt-VWolpqpDDg-LifE1G7Fafs2jcSOhY5iRCPQ4VuGyoDtxIzbq6C5I1HKxMj358gFStGBHvfj-MI0CoyKTMri~FZ1lZxk5OBZgeSWYeQ~jeoyIoAcEyfU-TrU4tWpKrVug6b80OWJA__"

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Space Ranger 2.1.1 highlights

  • Fixed a bug where 8-bit grayscale images were inadvertently turned into 8-bit RGB color images for tissue registration.

Space Ranger 2.1.0 (May 16, 2023)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 707 MB
    md5sum: ee94c453c44770b2b69d6be46b948e3e
    curl -o spaceranger-2.1.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.1.0.tar.gz?Expires=1753219801&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Rm1rPKkVYA0yyBZFws1vQlx9AczwgviIMhbrhrfhUD-WsDqvtZXFD64u0obc8thaTid2pN2exTnZHoA1R49JsKceS95TQKkJ6k2B8wcwEpVxvFK20Oje6SgSThnn~3OmdEKI3sbHQuCM4jRgDP8q~UuYEe2CPUhcGChUZqMZoPm5snY8I7WFgW8sYFofQ0yzEDbjysWohAZmNWT1DrcfRRHDsZRAV3y5dnpqXLcygHSHeFCw4GQb94bj~wEQyydaTiEM5q8PuXtzV1mrW61S4aWniSQHspki2eszIyMpQifHntHMGo5zpcf6GVJJaIIEGp0G5LvnJV9W67CwXchGOA__"
  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 465 MB
    md5sum: a0d90129a81c41cbdd728e23a4d25161
    curl -o spaceranger-2.1.0.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.1.0.tar.xz?Expires=1753219801&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=c1MSc99FcXwRvRoJtDCvYyNQOvzGSmouBQRPo1wmkIypQZato2a25F-3Khomo0B4U~xiLKeeLo7OTxpaQOrwkgl6c8NhYKcmWWXts0Ysp17oDvvVVfqdH-Bghb5~Sf4hCbzriAD5SCpYEI0b7bdGHaPaSIDSLElPdyJvU1p4LAB4tYXtJ680Irz1YUjieN5aCE3aq4MQ0OzKTUPoIsag7lDbLvD2NhLAt0LuQ2ApBF-KZjSfDW7qU~70Nk2ji4s3ExLO5KxEz9Tv8tc6FLwUVVEXH1-pxexvQgfyePUXppGryZMaJndLlWv-8xUFKOsuLOMX~rWGaKA2Xz9vbPYJ2A__"

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Space Ranger 2.1.0 highlights

  • New feature: Gene + Protein Expression on Visium CytAssist.
  • New feature: Reference-free spot deconvolution.
  • Added support for bigtiff (btf, tf2, and tf8) image file extensions.

Space Ranger 2.0.1 (Dec 7, 2022)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 664 MB
    md5sum: 26151804338ae4d4b44151232bd64b50
    curl -o spaceranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.0.1.tar.gz?Expires=1753219801&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=U5jKdPgg7-X-b8MgKlXFZF9cr82XzC~6z5yly-nIUOOl47gOhov275r9oZuu4qqeiUpzdu0clAZMc7K8GgyuiuL~g4MC0tPw21Q04i5amLf2CQ4vgOSEjZcqaEoqIIXLKHz1~KcHeue-hfDRR4y8r4H8~s07ImFDHSMQ1yrHzREwA28E3p~t2WdAn40GAaLCxqy1QmQMpRp6jnROwKQgsqZfa~BYdtBI89n1ccxvQwX~R590ixamsS6dCK0OmBh8drywGQAb3QIbvZuqpYZNyhz~T2bg9EH-4-sLbWZC2BJqRnAnTgt4mK4DXsHfCd7dPI~KdmcYOOEw9wkCx4~0HA__"

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Space Ranger 2.0.1 highlights

  • Reclustering workflow now supports generating a UMAP projection in addition to the t-SNE projection.
  • Visium Image Manual Aligner now includes additional support for images with difficult to detect fiducials.
  • A new Spatial Enrichment table which allows users to sort and filter features by their Moran’s I value for Visium Spatial Gene Expression is added.

Space Ranger 2.0.0 (Jul 18, 2022)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 662 MB
    md5sum: aec9ec128c7bc9fbf9fd6d31aa390d4c
    curl -o spaceranger-2.0.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.0.0.tar.gz?Expires=1753219801&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=K0vlNL7xWzDYGGiLpGdilSjWKtt80B1E2~K52lZnV8oRAwOxhDiCMA8BMT6w3rx4ULPJuJQXfsDCsNdRB-ubAKTVR9ZPG2XBEUkpbXXHW6TAZAwRUxldYmQInWPjd6MqGgfUsMjYGty6QIjnnii2n7vxqYL-mpw4vyUKZGYts3k2AaYl8Lyn9hoFGxTQbu2XfUQsQ1v33dN1mt2F3jiU7vrbHid9yWhrzY32NzBMUKYyDxv2i~-zJp66T-xARozXMg9N8Ywka4x8KJgh2c9Uk13NHEdK1Q3tCdVK-3pls0EWSC~7DIz7arwceekjA-RZ6DYzbuzP-WiGFRQVgdvnHg__"

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Space Ranger 2.0.0 highlights

  • Space Ranger now supports CytAssist-enabled Gene Expression analysis and includes image registration between the CytAssist image and the microscope image of the same tissue section.
  • spaceranger count now quantifies fluorescence intensity in the image at every barcoded-spot location.

Space Ranger 1.3.1 (Nov 1, 2021)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 1.2 GB
    md5sum: c2eb73125d9ee731fa825ea3734be1b4
    curl -o spaceranger-1.3.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.3.1.tar.gz?Expires=1753219801&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=O4lpNr5DraXcmJpX7StTTqD5otjSJFBVC9Kxfh508t08qgnlY1aXgnJFEPuG-QkDUqCMTMNRVJ4rHTd8ZesE0Pw8PEUL3WTe9WvfxVX8LPpj7Vn0lFaOxJQ5fT0vaEmThxYJBD-58xSgPj8gCZIejDbaY37Zq2C20JSDUoJoVNhIVBuQuOWpTHQsfoA8nlZtdX1GZL2CmOWozDI3mpZKkokCLJa4wkxB9t6rCCeIA1AP8DnaTdh62K7~hHwGO-gtjtCUVsZPeSYqJ~YLTZ2j0pWrKFWYG0ru7h-Q6-nnCMMqVFI~fU51IzFSolOWmYtQGFtpAFr2CnkWRM0fRjNtcw__"

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Space Ranger 1.3.1 highlights

  • Adds an alert if image alignment would have produced a different result if the --reorient-images option was specified.
  • Update warning for low fraction of reads confidently mapped to the probe set to be more informative.
  • Unsets additional sysconfig environment variables prior to pipeline execution, which may otherwise interfere with the pipeline conda environment.
  • Fixes an issue with mkfastq when bcl2fastq requires LD_LIBRARY_PATH.

Space Ranger 1.3.0 (Jun 9, 2021)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 1.2 GB
    md5sum: ede7f98db5adf7785e35ae0508c48f74
    curl -o spaceranger-1.3.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.3.0.tar.gz?Expires=1753219801&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=b7rC8ZhEoqrniE63hwLbqsXQ1PmFFae4Fo416~5e9irEmu4zcaik7gTuFfLJvDn8wHkMtqDLBSxzLPa5Hjfy3hs77uVF1FGW2fgXo8UhhYNjzKP5UGR~QFaoe6kKvB58m-~LFht3eahSB1gukCGNmquRS0~yWuhunY~8Aedq6q-FYEnqyVv0zhfEmZhCMpyPQ~7Ao9Bw6YU-YM6uZ6e17fZjakDcUzUlWSvG9NJjwH14qQcVKXILhFtICZrDhV8UVgKGkXrZ7pToN191BcG0f1lib1GC0UgOj44Ic0~~z9w~dqPkHrBSa8hUkTTp-tatjpLVPdbR1IP-uSmwAEqoZw__"

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Space Ranger 1.3.0 highlights

  • The recommended operating systems for Space Ranger 1.3.0 are CentOS 7 or Ubuntu 14 Linux variants or newer. CentOS 6 and Ubuntu 12 are still supported but have been deprecated.
  • Gene Expression analysis from formalin fixed paraffin embedded (FFPE) samples is now available in Space Ranger and is invoked by specifying the --probe-set option when running the spaceranger count command. Space Ranger 1.3.0 or later is required to analyze FFPE data.
  • Space Ranger now calculates the Moran's I spatial autocorrelation metric on a per-gene basis.

Space Ranger 1.2.2 (Feb 3, 2021)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 1.2 GB
    md5sum: 3280a085714ce7c894dc14b76312bcda
    curl -o spaceranger-1.2.2.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.2.2.tar.gz?Expires=1753219801&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=CpQLPn4sj9A5MDVpQo-cfNsOkhFXi236lCqI1bmi1FZp~YH6FEi5MdjnhuFo-MDwGKMhP55jwP0S7HgMmE47g32HXXgJwXKae8TuPhm3OgytE3pTlElEy2lWrc0MHTyuo2w97UtjoOtC-M6dYhAMvcmt9SgQ0cfk9~JbSJU9Rq5hIxWm-HneGk5o0DwmuPiREdXyZ1MTSwsaQmKwC2MkQCTsY70YG6nfnt-K5P2t49631Ou53WN8fqd~3MFvQ2RPPwJ3tbD~gR5gIzm8XeXNSW9zBBp72B4oJ3BIE0-tMptf~YSX-X5J0rB3yxnaOt0yDm8ih6zV~AcaOulKKpqoLg__"

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Space Ranger 1.2.2 highlights

  • Adds support for pyramid TIFFs, or TIFFs with multiple pages of the same image at different resolutions.
  • Fixes an issue where targeted samples run against new references would fail preflight.

Space Ranger 1.2.1 (Dec 10, 2020)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 1.2 GB
    md5sum: c24ecfc95c5e4f1c268354c5934da98e
    curl -o spaceranger-1.2.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.2.1.tar.gz?Expires=1753219801&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=hFhEARzWmb6NUw5MZmWA3Pbs08t2t1bdcoem3v8F6g7yejGvzV9rOK~ywGSigN873ryTAn-4R7Qeafz8U6srCQQTPuNJIJefGWk3FIXbgMnpyh3~O3K4n8hhAN1nB-XTPbYEXPdq7Rixw3Wr5bt34x6-vMAoFgU2C4ihXd6FysIKcG1k1VNrw8Xp4MUWOJADV-7Fn3FL5QSa9Z5RuKf3CjKZDirHMz2IcjY~6FByjfaMhCp2XcWV2XS19oTETrakA1WTqPztokHjDbNa2U1GIVNyBMj6i-sYgN372Bhft0X~toJ-oaO21hg~mpRvoCbejrA1kyov4E6or21IXnirCQ__"

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Space Ranger 1.2.1 highlights

  • Fixed an issue in aggr where files would fail to be copied on NFSv4 File Systems.
  • Disables multithreading in mkref to address an issue where mkref would fail on hardware without AVX support.
  • Better error handling if the pipeline fails due to a missing .env.json file due to an incomplete copy of the application folder.

Space Ranger 1.2.0 (Oct 27, 2020)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 1.2 GB
    md5sum: fc21902700779111afc3c813bbb0ff5e
    curl -o spaceranger-1.2.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.2.0.tar.gz?Expires=1753219801&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=hf2l6A7neeADPyXANa5m1wKTMlLylYin4CAaXv8uVLHrEa34bU09cMTNo3GBODUuAVpa-KeOUOYbA0EHAyX5-CrFsDSAzH2xGA-~HfzfwERARNRFIoPB~F5vCmlktZoSu8cbjqB2Qgx3gnLb5tBadM~hC7Gu3C73VAQ0yQE4oNPAVjsiPotT5atvrMuC8xgP-KlgNOLBaWJOG39LcSoyvJ5c57Juzso4k~ykBYyLjg9UGLuKklXH8F~4lDYqDWJ2hbyP7QOUJvra~GQg0EQ2x27R-B141Ns0VxjUhA8i7QPE2KqDm1VMBZLXfyAhuffyh3aWb1uo92QeL6-OuDEsoA__"

Download is unavailable on mobile devices.

Space Ranger 1.2.0 highlights

  • Targeted Gene Expression analysis is available in Space Ranger 1.2.
  • Introduces the new spaceranger targeted-compare pipeline for direct comparative analysis of matched parent Whole Transcriptome Amplification (WTA) and Targeted Gene Expression datasets.
  • Includes the spaceranger targeted-depth subcommand to estimate sequencing depths appropriate for Spatial Targeted Gene Expression experiments.
  • A new command line option, --no-bam, instructs the pipeline not to construct BAM files.

Space Ranger 1.1.0 (Jun 23, 2020)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 1.2 GB
    md5sum: 708b93997295db31bc457b3d9af79ca2
    curl -o spaceranger-1.1.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.1.0.tar.gz?Expires=1753219801&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=XK3zXuJ~NBynqlxoU1UI-5vQtUC5O7aZW7X3VZiff6iX6mz3tGJtk9D0OlthMGZnDOIxLy2xepWFoXdQGicAmbJLjOaJlkgFVJeu68ThDhjMvfw5qjpSgNiQlLHCX4GICFsZsnb7aKTJk9CPjT9bE5O8m7bztVSE4hsinjf0RXmOURLEROm6gfwveYNIHrt4xkBStbMJ~p5M0nfVhDDEq8SNxS0a5PcEJVSKg7vwDuFGqfPgyDKppWeRXHmpWQJ5dATMqd0sdHJ8BCzoc0EX3mKHvnBrWUFc5EmnKmGewjRN9~HntKk4ftgVigwj1Ptb5-jVXnB84Q8xVTpr4Gg7Zw__"

Download is unavailable on mobile devices.

Space Ranger 1.1.0 highlights

  • Support for fluorescence imaging input such as IHC/IF.
  • Aggregation of multiple datasets.
  • Optional automatic rotation of slide images.

Space Ranger 1.0.0 (Dec 2, 2019)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 1.3 GB
    md5sum: 5cc7fb86d0cbff7df687b11575efb7cb
    curl -o spaceranger-1.0.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.0.0.tar.gz?Expires=1753219801&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=iI-rQcIF3KJOKlujpZVm6u5C8bGqNL3ylKEUkir7IWuk7Npe6rnN0PUK5HdzXVFw2vwLuyNYLSQG9~0NhSWTR4WmgXm60oMThVZcyJYQ5iFV57~igYL4AmwckytPCd8nb2Or4b49D0JlNayoeLZX2eDjRmQ338XjS61Pr6KSbioMRdy~TytySjnFz893HeyVbidJxOA2mjQe0i2tkKCI5aINZeeoJfEJNv8NzgGkOSGVllzDc~3BZzcDdO~xT05r2pCKIXhUHZkgVCTIb50mI0TbJs0rstJFyuonaJdHVVhbuUIBT-elJlRMaErL4Z5kjfAztwFhizObj3I7CjBA8A__"

Download is unavailable on mobile devices.

Space Ranger 1.0.0 highlights

  • Initial release of Space Ranger.