Previous Versions
Cell Ranger 8.0.1 (May 15, 2024)
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Download for Linux 64-bit (tar.gz)File size: 702 MBmd5sum: 1d08d8005b026fc1ca3c867bc67b2dbdcurlwgetcurl -o cellranger-8.0.1.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-8.0.1.tar.gz?Expires=1732278737&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=KWWcKH8ufMUYxs4jgnpNGKcB9cXWFbgpEMJXGO8ykcrIgrnLgDGXV1FhhXkgw8fKeq6AGRlaqkQsDeS~ntUelF4wpNMJQzVnYV-WAZJiP8EcGReE7z2BHOegH2mP8Y77VjkPM2bQ~hUlx6qwru~0SBNE7QSDYzz1xupVen~9UvIyDiDIMMOtJINGyJEnuVlKgbE46ll7YmPn9uxyCpqv5K5ZvjD4kL2yTYcnP992nMkmkLxDDsxXuKvvAnz8Q4nyA6PlWc6CGnMUQtXakPuLv-Lh7HNDgvepk-GwPO9I2QbBzl1flQ09I26wVboRJOUIczfjNFij6BbOas2ofgLHRA__"
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Download for Linux 64-bit (tar.xz)File size: 453 MBmd5sum: 5d112b68f8819d50e54a9f3809cf5533curlwgetcurl -o cellranger-8.0.1.tar.xz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-8.0.1.tar.xz?Expires=1732278737&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=EE54KWLXGPPt0hPdegjtwtRrb-QSYbo~~J8-Cz3MfMRnW4D9oQwjfXcNL3Ag18KhKpKmwWoHZb2-nhTTmsgjc2tY-gZ7UHSr5R2q4KuNgg6V3T403~UlG9LhEva6CM0xif6h6UkqxU46Gzi4dmhtavfnpyY9HHL8QnNMfjiRwjvZr2LOV4PDAFXHgXU46odfzvEZg0qYZ6a6QCOXaFgWOZax31oj8wZyZWxtlRDVmppVga0n4fcz70manGYr8UFnw9SM0U9F34DEkY5DVS8a6~fHF2a3AnCxPBzV5EX~2OtQPJWO0NMydGtBehY1N9AxjKjx1sG0j5lSYqU8mKwP3A__"
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Cell Ranger 8.0.1 highlights
- New feature: Supports the analysis of Chromium GEM-X Single Cell Gene Expression v4 and Chromium GEM-X Single Cell Immune Profiling v3 libraries
- Support for Low Throughput (LT) libraries has been disabled
- v8.0.1 fixes bugs and introduces a new optional parameter (min-crispr-umi) to customize the minimum number of CRISPR guide RNA UMIs for protospacer detection
Cell Ranger 7.2.0 (Sep 13, 2023)
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Download for Linux 64-bit (tar.gz)File size: 653 MBmd5sum: 85e2573e80a6f8656a42ff09460463e6curlwgetcurl -o cellranger-7.2.0.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-7.2.0.tar.gz?Expires=1732278737&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=RrZwyY9BsVx7GXpNbbjNrzrn63cwr-qa1HE8YdVz0KMhf5YTaCfjZIbsjly0fkb6kg3akmXQ4mDH~S~fe6BtXS1IMJR-Zi8psarT8CK2gAq04SP5LUcuQvjBNYKl~rQcH1hRdTTKfOA78YpPV9zwR7aRiaSQxyXdCnguXfVqGMl0CZQFo0TkQhYlcKuc1kb3iPHkQvwYCEa62WSdtxUeYq6byDptQT~TyYkzwU6KDnvG7LVxrux6SIsL5sSGrBfcdGdHUOI-~BZLVxK-A2rLegWe0GCRMen-xxRzsDPGtCZ03FRta6GQCgblEdlq~yqlHRdkeg1SwX5LqfcNvraecg__"
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Download for Linux 64-bit (tar.xz)File size: 436 MBmd5sum: 64f2c8c813dbdc030a80ad59096dc9a2curlwgetcurl -o cellranger-7.2.0.tar.xz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-7.2.0.tar.xz?Expires=1732278737&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=OwdmF1tmSiA4N48t3U3-B6cVnKgYNXzukhUzwh5HBUlpI06ZM2j~uuiC-xIZXQGdZFl5DX4zFR5GZ1dBLP~fwQoblP1yleJwKzQ10oZl65qnGxFRK~EJPa-7M83fH~v2pasXezuaLwc7Y~VSToTyuItJ4XznG~FnZbxbWFOrKVTRMizxljpgeGm8SLzTP0t74snbs3hOwX8sIoekH0Yk6d1ytiByy-cFlf~L2sCqiBZiOuKaQOHLTjg4MY2zHLHx1hJkGuUPPR00ZPQvCZGpKYaPMlkC8m8U7lbqzXoap16mi~Nw2NoL~EIscSU-DwLryia8Xhi4iQ7KnZ0M0HbBDA__"
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Cell Ranger 7.2.0 highlights
- New feature: Supports the analysis of Multiplexed Gene Expression with Antibody Capture (Cell Surface Protein)
- New feature: Supports the aggregation of BEAM (Antigen Capture) libraries with cellranger aggr
- Several improvements to the web summary output files generated by cellranger multi and aggr pipelines
Cell Ranger 7.1.0 (Dec 7, 2022)
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Download for Linux 64-bit (tar.gz)File size: 639 MBmd5sum: 0938af789631800b20176527063c029acurlwgetcurl -o cellranger-7.1.0.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-7.1.0.tar.gz?Expires=1732278737&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=RkZvJFm7moVP16c5eXTomD7GBLAXDaD9rXfHNQDJtesRSgzF0KLDKIi5HXvKuhtzafXUN8ITEWnE4ttWHvJN6DE1ctDayp4jiyNir6UgpuOtjjHNIHfHtL9UQpaQe4hmofRagN-5BMRWQGs0kgLdoJ4MoGyVa2nJMxFpho~k0rMZVHrWEmoR-rLXgCvui4Z4Ct6Db79~ZNHjQ6Hcu~ewx1ixn6aEAi9mpghbFts63s2j2FlfDJvPUXGdrgV77TCeJLqyP6v58QmaWu8VBwvDyePr2iUywGsqLN28KAyGcMqzd5BWnIHS3fYCvky8ov14KfzVsNzM70dMPXZuOa6tVw__"
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Download for Linux 64-bit (tar.xz)File size: 379 MBmd5sum: 1b90a1b0a785c34ecd5ed9227f72f78fcurlwgetcurl -o cellranger-7.1.0.tar.xz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-7.1.0.tar.gz?Expires=1732278737&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=RkZvJFm7moVP16c5eXTomD7GBLAXDaD9rXfHNQDJtesRSgzF0KLDKIi5HXvKuhtzafXUN8ITEWnE4ttWHvJN6DE1ctDayp4jiyNir6UgpuOtjjHNIHfHtL9UQpaQe4hmofRagN-5BMRWQGs0kgLdoJ4MoGyVa2nJMxFpho~k0rMZVHrWEmoR-rLXgCvui4Z4Ct6Db79~ZNHjQ6Hcu~ewx1ixn6aEAi9mpghbFts63s2j2FlfDJvPUXGdrgV77TCeJLqyP6v58QmaWu8VBwvDyePr2iUywGsqLN28KAyGcMqzd5BWnIHS3fYCvky8ov14KfzVsNzM70dMPXZuOa6tVw__"
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Cell Ranger 7.0.0 (Aug 18, 2022)
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Download for Linux 64-bit (tar.gz)File size: 600 MBmd5sum: 98ffff631adb7298d38194073626817fcurlwgetcurl -o cellranger-7.0.0.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-7.0.0.tar.gz?Expires=1732278737&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=FsSBoqOxoKLa5Qzj5NBIRhOUlFd28pL~MFGkRB8fEiXoRsMJ1ptqWOl~7rlRZSz8imaul~SS6WkfHDxUCS9KvwALCSoZ0QJKlBDxLS4VXjosujGyiT-UwvvpaBD2V9HA6JeCRRlWadO7-IwyWEgnz7Qreks4iAEXPlma2Uu1356uEz-JqZIZXdLNXh9K8-roFWjPzLdDoiQIJ6BqhrpmlAVGpHQywjR~An0AkpGJY70Kl9~9Fe7QMrnwF1ApPVE5EiRhFEVPnAZYWOA6Xsg-DqmOCFR3152c09~AzfXF8skB0o6dXn7H6cq1tX2M7tizhknEJIDQIDmXwGcRxyJ9Jw__"
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Cell Ranger 6.1.2 (Oct 25, 2021)
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Download for Linux 64-bit (tar.gz)File size: 768 MBmd5sum: 310d4453acacf0eec52e76aded14024ccurlwgetcurl -o cellranger-6.1.2.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-6.1.2.tar.gz?Expires=1732278737&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Qp-X5cfCw7~5RAimAYfaqsclCzXFVq5knL27HKwbUL5arafSWBufZx5~GKL51QyU74MLDT-ANgORwbhCtrSC5jt3DCPUdM3oIUl11Wf2UnArNsyEQ2ye0KGUjubAFgI0kGweOzIvP7fj9ClR5Zyz-O6xpqrRRihN-l9Dhd2nLiQfhEgCA35S7VrKgtuiUUZy32CUN2dGr4zXF7MEXr3OFQqyfxJBmue3bt~wwccNYmEugsdS6FV9EAgPFQC6jlwGHHTx21es1w2r6Y2~OO4p-CjOtbdiu2lgQyiTsZ4EJUVPmsRB2EqpXVScPjoFGySw7DX7e58t86t-6RsiA7KvVQ__"
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Cell Ranger 6.0.2 (Jun 21, 2021)
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Download for Linux 64-bit (tar.gz)File size: 1.1 GBmd5sum: 5e98504fcccd3e7257c167f0fea399facurlwgetcurl -o cellranger-6.0.2.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-6.0.2.tar.gz?Expires=1732278737&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Hoq4p9l8vCffx1momjZIUAct-m3b7Ad3ef-hZ7ithMzQ5o1MxXHVJSXR5GJZ1Q2v4MLpX57PHAe~J2k96tX03JKM2ufmAU7lvyI8n5BY6Pj9z-4rPzm3J-RVbc2tYzACYJZJubETdZhpzNbPAcIbF-FxA4fayfyB99IyMei4RL7pL9dEXTJm9wuTqoIKM1uuFtsm3f5IF2pNH37z6y0XBYI7XAemx03S~6mwMBG41Ju4GHaKx6yiH5FUWB-wRLVJ-o3zzPVqnAX-P8t49BLxksq6p~cdx3Db8v87XXJrNOmqOg9WR6eimhKhmtMw4f7glcUKHcYZDHXqWit9c1y6bA__"
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Cell Ranger 5.0.1 (Dec 16, 2020)
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Download for Linux 64-bit (tar.gz)File size: 955 MBmd5sum: 8b9d217c160d52902ebcde8608765119curlwgetcurl -o cellranger-5.0.1.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-5.0.1.tar.gz?Expires=1732278737&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=dQ9egb3lfTWGVJuvUUhUWZbxPSzWUhZ9DglJGZgPitsGcO6H4~gklsGqmLCufp0pmo-eC8YQrnxHygg3M1wQwYhoHkqz9IXGZMMeaYGdxmJ3qJU5d5gFnHeX6iOKmp1u26zgbpSZ3mcq-o7nKViiTTjRGUZifWiCJin5lR3p0PzHdnq9mZ7-kE60DNiJVL5LCgEB1gVqGKdoy90VGGuMnFIq7pl50tuXfO1OHryA5eDP0YHx-AxlJ04ooZYcfKUxQ-Z0lz7a7cFCysX2Ty524frtfi1DlQU2dXpFAzBsEveAdGpk80yAYzX6gjPxEupxjDo~6-wHNEYtvK3WX8XLXA__"
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Cell Ranger 4.0.0 (Jul 7, 2020)
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Download for Linux 64-bit (tar.gz)File size: 972 MBmd5sum: cc4ed44a57570f6ecb3ea5881e01511dcurlwgetcurl -o cellranger-4.0.0.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-4.0.0.tar.gz?Expires=1732278737&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Y70PX2-7bZvVUetBTyXxIoDgadEKR5K4BvKzXN~i08mutam7J50rYs5TDn2-tH1CiIkUs221f5ahTNXrK-2L3ozt0WVARw5sPkOZ6SCR0O~QCnvF-T~CoHzYImApb8NFHbOyYVFtaDvl8qewcWftIehNr8siF~K~erTrej1YiyDyJe69T9I-~vitTbnXIWNHwA3LO6w9rJFw7TaIhwpcpAV4c4-n0cxx5ucaR~bBIZi3M8Iq0~R~No3ZUTmyIhU2ZlmHcaTpc4LsPHmOaTFQTnM685x50q68PxTwG1Y-pM-8vuYGuzQGTPxhZEzEPjRBLOE5aDQqMgaf8OB~mNUNPw__"
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Cell Ranger 3.1.0 (Jul 24, 2019)
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Download for Linux 64-bit (tar.gz)File size: 1.1 GBmd5sum: a362d62530e9d6a653e5bad5b9c19abacurlwgetcurl -o cellranger-3.1.0.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-3.1.0.tar.gz?Expires=1732278737&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=PZT7qJOLOFcmOkp1aYI~PFH-C42RF~dAffWHvzsR3THztqkKLSEAkFy-seCMuiHkVb~szpJbSnQEIXFOuRf7Rcc4oOdR-To8j9VjAjy3ghHsY8ilehMCCuD35oUOVuQxjKx71xb8tnXXIjawJ6LlqOOU2dG5PTp4IpXXTnNilVt28Bkh0D81CcQlOWk6OhGW3Rfl2DQ7VzrOAjdCwyGo~x7hlOM~qLpQdk~stuuDC8n5Rnmz8eulUNi6GWm7jyfgYIK1vJVKFqL80ijSy73uJyfqw~iy~U702LW8L62BsZoFxJ~3N5b9S0YzmwXLkDmK3tWMLB2iqYuczYwVn00Gog__"
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Cell Ranger 3.0.2 (Jan 15, 2019)
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Download for Linux 64-bit (tar.gz)File size: 955 MBmd5sum: 73f3766579e800015f82daedb388fcd3curlwgetcurl -o cellranger-3.0.2.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-3.0.2.tar.gz?Expires=1732278737&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=VLKzWUuWpUWd7LF9LPF8JE3YsTApyri03XWZl0nhn-onUMk59R5FfrJVCW-aGsTxNbKde8XvkL-aCmv99nKnldO-8nONHJ16vGxk8gFXAvQni3bq6zbblMmvWhoX~W0B0LUqnaWnODX1ZoRnrhQ-FwLIXw0dUTbwCEfe4JlZdI9VwGTbLmhg~OmN0uJ9UMPu1fqN~0MzkWNZBr1IAbjbw5bo-Nd10FRldKUZo6dcVCtiqC8VIfY0a84Ofca3FypoexNzRWTANBOGr5aLKaC1b~RD0YRHg8RoQ0fSfSMw0ZzXbrQ9RhtNuCI0O4MXLKtITppK2Wf4T04--XrYc8c4CA__"
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Cell Ranger 2.2.0 (Jul 31, 2018)
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Download for Linux 64-bit (tar.gz)File size: 663 MBmd5sum: 021a7c0059c17b29be79f5f10d7017e7curlwgetcurl -o cellranger-2.2.0.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-2.2.0.tar.gz?Expires=1732278737&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=b9dLgTbikZuUl6yx8EEYXH6R6DHBy4CauLj2agyVlaj1QWe9uSsn645MBN1MeYAT359vZU9-pKrRyBz4888yb9OAE1pjrG-Njy2GmmqN-6~ydXCfjgiUxMGLT5NUAKgFLV4SdzyAS30bLnsSBRXUAeTuw8GrRYgs8v8wsd1hLwaerL9kXVG2p7YUf5sZcLWzctixaxJY72X7BfDC4CkEc1OgaykpTDsenJPlUFVnKbsNfFdXui0H0MWX-s54FEXU9u1U1ijQjRcDl7wTPF090Pu2HxmBzA-Jz19j9Nu1dx7MfgpceghYxj7V5~IBu8CI~5Cl~TkQKF96G0bJEKteNw__"
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Cell Ranger 2.1.1 (Feb 26, 2018)
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Download for Linux 64-bit (tar.gz)File size: 683 MBmd5sum: 52ee46d3cef8d48b17953d6df27aeaa4curlwgetcurl -o cellranger-2.1.1.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-2.1.1.tar.gz?Expires=1732278737&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=OvDC3pIwenuqiz2oTaLDmLzFlBXcSLTbF5povj89shu6WehWqHteGnY4Ggn-2tWIAi4SKAE8I20Uda6M47StCiydFJwtvAS~0vvJqo6PKmlWPt8jPbChN-euZARiREFsdjEZqxa0cwlPgiPL6eoEfAcIoWXMFm13NpVkQWnjYbceEGvmquUgIaM1ck~FKmckhCVTpEuqtRV0LPLPe~6oa988PPY7aJzx3U0OpMgDLLmmloXNV8OpiEe5xsGiLD7ak4zmIkcOe2djCjPfrwbUuh3tENCy3Q5Ct1UjZWV9e~r5u09PBUU7SW~dyO22F6f5p5WHxs8r5A-IZGJLrKv8Rg__"
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Cell Ranger 2.0.2 (Sep 8, 2017)
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Download for Linux 64-bit (tar.gz)File size: 732 MBmd5sum: 4a2526e556f549fadba4a709819d5d05curlwgetcurl -o cellranger-2.0.2.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-2.0.2.tar.gz?Expires=1732278737&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=YZAmcdkH7px1kPFnCKVmwC1grULKAJNdaSREyWxc8IizSpqoNJT5QZQb~7Ipx~S0bPaD1CjgeweRqHqiI7KCTt7mL00EcejdZguxHl9Y4hcwbjO2zFtKjHdajBNY5W~V07BL4chGhE1pkd3uzFnmX0PkdUxABL7oCYxOa2LQ2Il7OykM5Ih1UZsRPkmi07os5U7FEH0KznwHxPuMA2t7YoKSS7L81MtZ1HDYSJprVqQwSyfvhao7aXRj2Mkwkplz7xChHP0-tLxVx-gV0m6Ky6t0Sv~YU6PTjBOoEkUFAw~64EWssUMS9N7QpIfHncvwdg8HmVUyTIdoUy23tJo-2Q__"
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Cell Ranger 1.3.1 (Feb 20, 2017)
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Download for Linux 64-bit (tar.gz)File size: 717 MBmd5sum: 524bb6a17ad10e242cd294678f4cf7d0curlwgetcurl -o cellranger-1.3.1.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-1.3.1.tar.gz?Expires=1732278737&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=fHzMiNq4YCFLQVSQ8HCnhqVcLZzo89-T9WP2SerPQ22No-TEd8sSeapFXrjjQ2ODgjeMkQoMdR-SZFwKh-bLigYyPeg0CeGz~bYEt0oqNQdpBtD6alBEj8Y9gpis0Ok6V-svviSt3SrqAjrG1AXBGwh-JEF3dzk~stoV3cu-IYuJ6B-dVzKRA1E45gxRQFo9Dt6Sob2QqU5xn1oeJNlS81RBW9GXBMxF7qGQKzv-oBZBQqxZj3t3iGA2VBwxPjqwUVXWOEht5Xny0D1-NpH4tvRDaWy8pSCnz1Hkc-wGQdJwmk4vVDCVUTg6uKXkRZcSmEsHIDTu2u1eixAhRDBFgA__"
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Cell Ranger 1.2.1 (Dec 16, 2016)
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Download for Linux 64-bit (tar.gz)File size: 712 MBmd5sum: 889dc2908aff03e2a0430786e5c09f45curlwgetcurl -o cellranger-1.2.1.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-1.2.1.tar.gz?Expires=1732278737&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Drq66OZjY2jkrO8~fJ5pfPta89aKXZfw-PfO5dKiTSQO59tcjg3OHf~fATxtE4cEXls5zlv2nAJl2U8veDeQ9irzO1n0nzwt-yPcjK-XGXG~XV-k4fyUJiG~qOJti0de6YPgLTb21OGmjGf0SqjhNNcqM-hSgO4wk8L9f2sqLmcguuS51zXHDwRETzagN22ryU55oJzYH~T~kV75wkqdOpCtfWN~6prmwDVxX6sXbhRzWs6QpM1OJb~uqOvmN8OJCZgcnBbOHnvCC5A5hWl7KeltbYmQ0GREdB-z2FMP6wQIrwOMUfPRd6q5tldgVga2T851nbsMgW961IBsv7ZiAA__"
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Cell Ranger 1.1.0 (May 26, 2016)
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Download for Linux 64-bit (tar.gz)File size: 395 MBmd5sum: 9bdf639cd135bb991267683f21469b4ccurlwgetcurl -o cellranger-1.1.0.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-1.1.0.tar.gz?Expires=1732278737&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=LO0clD3ZbP52AGTOd7CHc24dTpTJmSUOZ~cpiYDn1-et8XIzMen0DER4~xswrG~FyBJL9LUTy6Vvlvd1WJdGsDwmnCpFIyibO~SiGY7Bzjhs08mk1VlV7K2WMu6VWqC297UOeSg~kAEbKQt35G~Tnlsskx3mjzRoml63JtU3Z1CuR2E6FvjMG7pHDlBqUMCeB-OCIz6kyiaYgrn2nGDuzLhAYX6~ZAdIzOSpVPNQnDNeIUxYvE6SPfnAmFX0shUzW48DJMuqTyHW7lgDPSsRnlQPxhuS6B72H-HO10cc3cKSK7apQ87Z5v2-YxL8BFcvggKjYYFCTxDso70XamRO-g__"
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Cell Ranger 1.0.1 (Apr 25, 2016)
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