Previous Versions
Space Ranger 3.1.1 (Sep 9, 2024)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 827 MBmd5sum: c0b9a274d7d3692e28f086818eb55e62curlwgetcurl -o spaceranger-3.1.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.1.1.tar.gz?Expires=1745741087&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=OVkBY50vPStn5Xa6MpJKU3~Xm9rcQxLw92rE8il6R-1InmrLPUO4YA4eoXDZo8qps8I55vN0~2ydTOYfa21xzK9hgO2XQo0rDkyQUbzyrWHApkK0YZx2uz6n9hY~mIYHAzEojvpwGqzis9RtnWgzvHnQ~zCNV2KMYVuysMj8r6D~dsfXkUm15tbFNdA9iazn~eISJnAh0-ZFQy86NvIF6s4QoIk61-pORAwo2Qq7Kcgs68GeEx7WNxqz9geHYMiTPuue-j58ae24ItwyHO7ZlLG4MKK87XhCgt4zrRomfhJSusjmG8Z1PDttwhhBK9CVXSv0D0gg75XFGAXx2X20pw__"
tar.xz compression
Download for Linux 64-bit (tar.xz)File size: 527 MBmd5sum: 4adde78374877cee92d056b903a77759curlwgetcurl -o spaceranger-3.1.1.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.1.1.tar.xz?Expires=1745741087&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=XI4egzRHR0qgpOWbPxLLzvYV-eRSk40hy0M-iidqVeRo7D8PPc2sLjIFMYttj-HfS42JgHVCjkDAUZKpQ-1ikjgUX9slY66tppnV-c2lPlOZ~xlVUqXvaAFXCjs0zp-XYEEoNXeG32Fiz-u0DmK7iijYaCvoaHpBx8iNO8n-R7AabIe52FlThLiQ4i2nqN06z6CCcZIfyBGV2qXnDpoqdFfZWvicH2Hs6Uzv9-kRFKUBJ8Ax1SJZpxZqh8JrRYgO6LeyWmNbyN0l1zPLX7IOSKBJDm0QNiFuWBpdtIiltOjOvvkhJoZF2VcE8gQ0t6a8a-hmzkTwZjfSOpq3j3gzAw__"
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Space Ranger v3.1.1 highlights
- In Space Ranger v3.1.1, the pipeline has been overhauled to significantly improve the CytAssist to microscope image registration process.
Space Ranger 3.1.0 (Aug 28, 2024)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 827 MBmd5sum: 13a2c82adfb1f1efb737e2be121000d1curlwgetcurl -o spaceranger-3.1.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.1.0.tar.gz?Expires=1745741087&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=oVxiw75fY22MkFUMyKV7OUP-PK7zTyT3VcEx3FOgOKE9goaZHuJH3dJEENsf39L8cvhrlZrBVhRrsa20QmxZN2qM87aO9wwsnj9JvHodygysRXPesD4aRji0x5q5kdXRunh7AGMmfXaNOgE3ujhomp9UdVvRDD-amTfolQwGBMrCz4zCKRL9U86HWoRAjhfedp4KZb1ZxzytQLK4d3xVPEZaZePmkvEEBRwzm7Qqm956j9iqYRH6RWlzEIPfsnBNV34n72M0NhV0JcyIRRd5fQaHCiFfeDFmRubu3DjoWqiM0X7xLF8mPbgqwwkX37lJO2KIt04DVP1MI0mAQ9dj9Q__"
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Download for Linux 64-bit (tar.xz)File size: 527 MBmd5sum: 28010d3724e9effc488470a961fe39fdcurlwgetcurl -o spaceranger-3.1.0.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.1.0.tar.xz?Expires=1745741087&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=HF0ceyxG26ADmJ7lMbxnE-PhelLAn8ZFGiYzXv4J2t-oU29HbLNb7unuUnrrUKjRkvztiR9B-iAsGKNr2rEKdzjAvDeoJioNN8d0kpXk3oXdd3qb~W8sQ2xmhc--pL8DJJyUqmr-kxeMvQdIljzYVLXfa7gedsqvJ9IimhRCJ79jB2BgqM5Xpudv3XN0P2lXAZV1LVk5TAfbrqRi2t6o~5BomzcCj6LXwG3Ft0~SEnYGyXE6Dovb60PordDdoBFka3-6~3XI3wXHFpWEkmYjB77yKpS8aTMtdmvPM2RQZsPdvXuoJNMfRGTFJGsFEhej0YlSScPT4QaReJj-i3n~HQ__"
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Space Ranger 3.1.0 highlights
- In Space Ranger v3.1.0, the pipeline has been overhauled to significantly improve the CytAssist to microscope image registration process.
Space Ranger 3.0.1 (May 31, 2024)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 757 MBmd5sum: ae65e7ffdddbb966277b7d1776f8c63ccurlwgetcurl -o spaceranger-3.0.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.0.1.tar.gz?Expires=1745741087&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=PIYmcwDXBgqs9n78iFa8IkW334A5I8Q2aJi7wHSca2dGZGLXCe0-fPyQmYSkfqWwsr0C3IsbPADN795FXXV6ETWfSlaTElde4EGmyBN64CwhGexbOFYzmckMyfGLXY-CMFsHMmakz~LvqmkJdZAyAS7MCtHQx8okzyjzzLfqWb3gub~3YB9oadq5tUBW6CDxnZsQgacM-f2cZMzXmrB1uK-xYDcVCvDCU5kwcWqEw9k0EMuW63Vxi2fTdHCHN~nj9MJL9L3PlC3NSsubWrk9H~NXaBmlAzA4eyUTiB~xLRFNM8NzQrMF93dxhslop8cEjCnhpq7jrVxPF44o3q3bVA__"
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Download for Linux 64-bit (tar.xz)File size: 481 MBmd5sum: 451495ee2074ff9adbac49ff8851ea1bcurlwgetcurl -o spaceranger-3.0.1.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.0.1.tar.xz?Expires=1745741087&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=kSTKM9a0n8R7xk2mhxlWfAJktjPqh38tqXcepdEosryVMgZ3PTZay7PBL9O1yn5p0ZWK7qBbhg-QNfaP0rX6aN18-D8z3OgcQY39A0~TxhDTsUf9zqxLCg0d2ez1--oeRS8N1wavGST1hLREp7QzLT2bSy8Hakr54Eiy5~Qr0v89YnjnckgzrOGtLrH4PEIbhYvIrjB7BpozW-g8qmKikKBf-PdSSSZrrVJCut8npjPb9QXtJLrc1peicUvJh-iAP4jdwP7wsUpInGrNn4wKlcKT0-dEsCF3eaKolYbQTwU4LOhdo5wi7xBm-bhCSFmaZsyb-OOjqdrb9MEf2XJeXg__"
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Space Ranger 3.0.1 highlights
- Space Ranger v3.0 now supports Visium HD!
- Space Ranger v3.0.1 includes bug fixes and other improvements.
Space Ranger 3.0.0 (Mar 25, 2024)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 795 MBmd5sum: 19f4443f10cf94aff5768bd8968cb214curlwgetcurl -o spaceranger-3.0.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.0.0.tar.gz?Expires=1745741087&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=GyrboMC-qVvIYptkWv9C33SC5FCu-aD5wx0aYok4SXrHBA2qbm7fIb4X5tRz0H08xmi48YZ8STBJ01uUU0m4afVq-u5gDgQWZMiNoaB7Q2NHeuqJ0FIw9TjsnKfg4hU1emTwW0VR1zchDE1Sm1TXUXveqvcaqJ9bAefFS829bM8w-N7BrO-vfKAKc-K3WL5dMKxmhmKnghdQUjVgrCbAkERwNQ8Qz8ovOTGb6dS4MSIm6swedOFjL4q7NBHMwGRwZHeSfWRY~BdCqIUpICbrcWtM6BC3T~Unv-2~jk0gG4v~0pQ54vlEIPlhfb1m01UzYNj2pRQiADJF4FiAhXfaag__"
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Download for Linux 64-bit (tar.xz)File size: 507 MBmd5sum: cd02b83fe849672066c40a1734819432curlwgetcurl -o spaceranger-3.0.0.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.0.0.tar.xz?Expires=1745741087&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=JpCNOMUgBCEoMNZfP2JaLeZDLtntMY-v~sWUYluXWtUCiOgphqcAeAocIyMPp2y8iaFm88ZFN4hraJfYmJyn6OoQOAyc8YBAZ8v6~t6e-tHC2cGTgg6oG4iYmcrVKHWyJ5exaSOfxXx6ZQygQ7~Fin1QR7ckdJV5OSdvUQlD7imdOWnXF7L9OZH0naw-554MpwQbJjzirPZlgzB0UrNQtxScnG1X11JkJocFBOSBFazJcbTqlf1lE2yu0CPmxzbrRF4QYC0w~XixSuarh5b0c03i8vSXZ66tA5x9~FUV~eqAppjPmMhanUb1T4yhktvEmAb-HwH8GCPeXyFJDtB9IQ__"
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Space Ranger 3.0.0 highlights
- Space Ranger now supports Visium HD!
Space Ranger 2.1.1 (Oct 2, 2023)
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Download for Linux 64-bit (tar.gz)File size: 707 MBmd5sum: 0ef64524af2735bd2a0fc9eef5a605f6curlwgetcurl -o spaceranger-2.1.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.1.1.tar.gz?Expires=1745741087&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=kh3efNSgurBhcl4jmf9Wcz5bifR5smMuYiJoS8v8b4z5iMRlUIDXgOUY~YJfW3nvSBwf0QR3VKMI~V6eTfxGqi9CItwTIKig-A9BU-JzBi9toLFG7~2g1vD4V~Y1KgFIIXAYyIs6arr8Mzg6dxPt7~NuvVZDrkHpmJBvdzGDcnNoiSYLKJSR2mDZ7QIB2Mw2v6NpwTaGwCCOWcrDtmXxWh-0hveyvPZfh3ISspduD6CcOwk97c3pHi4uSbToAPMeeeSVh8JnEWONI-AsJr3aM~s1-Cc8C5N20HHi-uAkA1aBm8qtORhUelG9p2Z-dkS58JC-2Vo4RPAevUz-Oc5-uQ__"
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Download for Linux 64-bit (tar.xz)File size: 465 MBmd5sum: e1204bb11b3589bc5d5af244b51bfc18curlwgetcurl -o spaceranger-2.1.1.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.1.1.tar.xz?Expires=1745741087&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=ZybaFFcdbzRoNwXGHrJtRsiB8ah7hnnHx~4KA7v2K0pGIP2s1o4TU0gLoHuSGzzfOHxHzEPI5pbCoojV~qlNpN6PeKhzGkFszIXFWgbdxAvUR20qZsXMprV8lAzfnJFKZRfso8VVZT4Qwuez9tHBFzbvUzXWvOhkPM1PHMlLh8o9BnXBfGYqW2dTWwm1HOeLGUxIaXLmzaiYpWHurHsyFRnmv0HT317XDJqPYpqb1p1ygK3JxqCe7Bo8DNSuTk6YWq30Xk2Mi1~Y0bu-Btdp6dn1xI8q7boMVffqigjC6e~f2-r~Qj4KrBfRSRFwIvoB3Rl1Rq-hVflFoIEJuxkg0g__"
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Space Ranger 2.1.1 highlights
- Fixed a bug where 8-bit grayscale images were inadvertently turned into 8-bit RGB color images for tissue registration.
Space Ranger 2.1.0 (May 16, 2023)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 707 MBmd5sum: ee94c453c44770b2b69d6be46b948e3ecurlwgetcurl -o spaceranger-2.1.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.1.0.tar.gz?Expires=1745741087&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=E~fxrs1hTphqwYUUmIgJgUCyzuTIHTeDXxMryBKGYcOWY5whZIJ4RsLLGJumavfgoXbcuAfEtUbdi1pJYc526Xn-rUa3RYKdBfNPKMxmvtpoTlH0pP3LV8TMrUh1hSIT7klc7fowM1tP4WUxYFNTzCi60ujmXZ-kNjcXDUKqNlhQaZi-leK66uzXGtaNc3IGoZXcGeWWv9lja4uNTz9HW9HCGnjV0uJLbm8IFxKLOEKE7x2Ed1KHM0SXvd2nKN~fvaJlQUy0tFgulTxx4Ys46sOSuY8rtsqwI~sysbkIUTGkjoZhen4Y4rBSIQS0TbUhE36IXlHaJKdDPog4s2Q31A__"
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Download for Linux 64-bit (tar.xz)File size: 465 MBmd5sum: a0d90129a81c41cbdd728e23a4d25161curlwgetcurl -o spaceranger-2.1.0.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.1.0.tar.xz?Expires=1745741087&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=fRNLOih5p6-GLTTj63FQTVZnU4FUK31-X-Xlp5rbHSEE-ENIAbN9Kos8P~vvRcZG2nHLKZ1qTHea6bYKcERgUBok5S4xAKFKB1Cqhig2n0GIE4j5RGrwYP9VXVrb6Nu0nCX3vQ7jdzpdCcezsE-se7c6LnM2Ck6AYyCD9xw5CTldqA-gsv~Q7t~GjzWs33jFEQD6n1DL8X84odlPbEXlERrBTXZecUykWcOuAHztt3DPsBok5Ky7TA8LrpvTRx37qENPAU9vqi09AakJBH9jMDFhipVuLd84Y~G7H7NnbfKCmXvgRNFOYiauUX6640Hlqn3XB9iBCrB2sDiCcCkocg__"
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Space Ranger 2.1.0 highlights
- New feature: Gene + Protein Expression on Visium CytAssist.
- New feature: Reference-free spot deconvolution.
- Added support for bigtiff (btf, tf2, and tf8) image file extensions.
Space Ranger 2.0.1 (Dec 7, 2022)
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Download for Linux 64-bit (tar.gz)File size: 664 MBmd5sum: 26151804338ae4d4b44151232bd64b50curlwgetcurl -o spaceranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.0.1.tar.gz?Expires=1745741087&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=YEEP0idfZXsJk1UMt8L0Dy8hqyMhJowbJm6Nxxlq62~0v2Uy9jeC2ED0sjaZUaLgjcwZsLT6QAnOUnzfmiSAXAAOUyKnqxizgWI~FwZ8DOSy26WIbHV5CuOnGNh95FWX~RpwkUquKafUQIrGSwtJ5WvEruOMHCBpF5HKX-D96Cw2oNO5GA7L4uPVsR-poqxEV0Dt4mahwiE~T4CAiFM23nt1UzcXEPprr1-aeGoZJkmaBJGGndJuYeeZiE3NTKH525YzEVxwmda8TUPQDGAGEbbFrLFHWHAQFQStySSUxfTiCluP1GI4G6sOwTNqj0PGj1KByA7AC0QkONH9gDYAhw__"
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Space Ranger 2.0.1 highlights
- Reclustering workflow now supports generating a UMAP projection in addition to the t-SNE projection.
- Visium Image Manual Aligner now includes additional support for images with difficult to detect fiducials.
- A new Spatial Enrichment table which allows users to sort and filter features by their Moran’s I value for Visium Spatial Gene Expression is added.
Space Ranger 2.0.0 (Jul 18, 2022)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 662 MBmd5sum: aec9ec128c7bc9fbf9fd6d31aa390d4ccurlwgetcurl -o spaceranger-2.0.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.0.0.tar.gz?Expires=1745741087&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=P~SIRQvd8gWxb2XITW55LLS9cK8X8bg3oyhlw94LTTcOu2gxYNVgbxe2XYVcrvEx0WN~QeGXcKRBQuqwbNPsILDxK0KHYgSa-98i4zytX5kUpeimd8wYpmAhRX-6RxqFLntd5SfwFaA74Dn5xCzmEL4dL7foBUFLkxTLKEYPjcEgZEJdBbterALuwQAqQ1oa3a9B91xdNrUYdIIuGB0RJQcNOKMDniY-GLImhLjkk9phKdxCY7fYTqR7iKxyvN2XQLcYKFy6Khj4nkBWTAtAwQ9mjgrDXHMo9e3cfp5dQBc3UCwR9wBAEgLrfFZHmcC-HUfKOkI5foIbhU3-USFlYA__"
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Space Ranger 2.0.0 highlights
- Space Ranger now supports CytAssist-enabled Gene Expression analysis and includes image registration between the CytAssist image and the microscope image of the same tissue section.
- spaceranger count now quantifies fluorescence intensity in the image at every barcoded-spot location.
Space Ranger 1.3.1 (Nov 1, 2021)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 1.2 GBmd5sum: c2eb73125d9ee731fa825ea3734be1b4curlwgetcurl -o spaceranger-1.3.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.3.1.tar.gz?Expires=1745741087&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=f9n5snfWNfJsA41cnBHmaFSOmjuPn6Q-0y6ciutTWmce9~ZVGmenHbmZaCYT6fxYtuL7hdQ5xXRJl6OA9TNXNRbnvVX3ILrJYN-L6JtmnF1j7zGnO4PcE3UDaHlCkWkLtk1FX6jmSQcA5xyTpNwTtmjfFzOtqbeu7qE24erw4c6OpnG36vAi1Y-iHyoW7OXtw4WCdEpq2PYZ96nmp-nVy8yQwamwjCuDaw16uWG3IxxrJNCWDjgB~Ql3BXFGX93l~5Hu2JXVKGL7tPuFDPxusOpICUIVWdzOQejazrd5mPD38I2fxLE9I748SJDbbM~-EspDxTJr78Kutbm-zLy-dQ__"
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Space Ranger 1.3.1 highlights
- Adds an alert if image alignment would have produced a different result if the --reorient-images option was specified.
- Update warning for low fraction of reads confidently mapped to the probe set to be more informative.
- Unsets additional sysconfig environment variables prior to pipeline execution, which may otherwise interfere with the pipeline conda environment.
- Fixes an issue with mkfastq when bcl2fastq requires LD_LIBRARY_PATH.
Space Ranger 1.3.0 (Jun 9, 2021)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 1.2 GBmd5sum: ede7f98db5adf7785e35ae0508c48f74curlwgetcurl -o spaceranger-1.3.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.3.0.tar.gz?Expires=1745741087&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=b0MPxdZ5Ny5FCuy~XX6cVGHCUreGHxMt9Bpa6O2FiPBURsYOVohjpD0m4wA7yl5oocbaYsNXAP4tkJaNuwyXbuGUfONVAAfo-LOR0783Bj7jdCf8~RrpKRZAhZ~YPNkA4ReRhVWWav8Uo28QldtcTjTrbwBgMWCPkCaSKYOcq-XS1u1YnyLafrWs~kykxqpRbE4kiFKX-qAyrNNpI35xJk4qdBFSkjUjnN7B~y4u8UCl1ju2Xy87zl~qtGT9BKeocRvc1SYo8uQzl5l~-YjnuDONzxwMr2HlYlrclBacqA12j4WaWopE68i62Lh~HC-XvAQhDUrRy~rAontfhlTjEg__"
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Space Ranger 1.3.0 highlights
- The recommended operating systems for Space Ranger 1.3.0 are CentOS 7 or Ubuntu 14 Linux variants or newer. CentOS 6 and Ubuntu 12 are still supported but have been deprecated.
- Gene Expression analysis from formalin fixed paraffin embedded (FFPE) samples is now available in Space Ranger and is invoked by specifying the --probe-set option when running the spaceranger count command. Space Ranger 1.3.0 or later is required to analyze FFPE data.
- Space Ranger now calculates the Moran's I spatial autocorrelation metric on a per-gene basis.
Space Ranger 1.2.2 (Feb 3, 2021)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 1.2 GBmd5sum: 3280a085714ce7c894dc14b76312bcdacurlwgetcurl -o spaceranger-1.2.2.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.2.2.tar.gz?Expires=1745741087&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=gsvkgZUwgpPSijqU~UHpJAhR5mk7l7fjST75xzeHsy-EIwaAydx3CuQLGT4Z963gjksntLXPM5rN7925L8i-gC8KwbU5W8JCxqj1Pp6JUu7aDh2xiraMC6PFpz49GlA2OfMruXzCo8wS2ZrQr-OqsMP1ojXVFAoX-WcU2I6fyeZu33cbbEBGgiMtViuRQehNDQP7mR4xPrJuGcPndteg8GkzGlvFxx4zfoSmiOt-jzA3bdjUNblKOMgmrV4eNQskyI4kjRdcYKXsOG-VVDhuluqbRapcsa~lxIjw5ZgACiGG8bwJ8gXAkrcYj0QAGVLgBGmxK8-nUbf6~V6WQAUnQg__"
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Space Ranger 1.2.2 highlights
- Adds support for pyramid TIFFs, or TIFFs with multiple pages of the same image at different resolutions.
- Fixes an issue where targeted samples run against new references would fail preflight.
Space Ranger 1.2.1 (Dec 10, 2020)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 1.2 GBmd5sum: c24ecfc95c5e4f1c268354c5934da98ecurlwgetcurl -o spaceranger-1.2.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.2.1.tar.gz?Expires=1745741087&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=NpExzpm8VgqSgJtmG9rFDnEMDMG96BGeBxYKJn5V3cWMHe-o~nct~U~edrottEkMmlJ7oofIdnvN5onaM-bCOTW4bTNyG5jCCdHM5gnoqfQuN1Z8SjMh7CfAlrYIbOq1MHyBzfRHQFlXj3GMiP43DzYM0RkOtGdVW8oWCsBT1hUZezgJJV~30QC9jZ9jMub7DYJH78odA4pee76ILUKcQgQJTLJ9V0u4MB96oevKljRuteisULU03t7nx9h8j9ojr~tx2BOW~cDjPWOzalHvjWV7QfdeP-zIrnZXx86BsBZNxGpLuNv6phHagMdiDdecZzzfECcwii~CNbw4q8~PdQ__"
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Space Ranger 1.2.1 highlights
- Fixed an issue in aggr where files would fail to be copied on NFSv4 File Systems.
- Disables multithreading in mkref to address an issue where mkref would fail on hardware without AVX support.
- Better error handling if the pipeline fails due to a missing .env.json file due to an incomplete copy of the application folder.
Space Ranger 1.2.0 (Oct 27, 2020)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 1.2 GBmd5sum: fc21902700779111afc3c813bbb0ff5ecurlwgetcurl -o spaceranger-1.2.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.2.0.tar.gz?Expires=1745741087&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=OCY-MM05dUYiz4sOBKU817No2cZE5woh5JP3VbaBj8wVAN0a~uKd4-R9VUkLgWWifXePJZ-NidBmTv9fMt84uGhvKc2MJec1QS5cVDjLxKI2O6d3dGoLmqHPFbXMfSnWoJBHpKPKlb6zptZLPMQsndObo1qydauIA-tEGpRnYw5Ba~x3LQ9PoMGt7dlhGYSl5tAqkrHrbuX6vCfIp5EOYbY5ncjpyxcfuPD2uZXyPGCnBTyGu3eFz7jz8k0~-ZuWxSulOqKqRAAmUyBeMPU4mIE3LlzkAGHY-Ws4k5PxlA1Gopnlar-mo1D3l0oe~BMIIBnU46zswk6COpG-pLsnng__"
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Space Ranger 1.2.0 highlights
- Targeted Gene Expression analysis is available in Space Ranger 1.2.
- Introduces the new spaceranger targeted-compare pipeline for direct comparative analysis of matched parent Whole Transcriptome Amplification (WTA) and Targeted Gene Expression datasets.
- Includes the spaceranger targeted-depth subcommand to estimate sequencing depths appropriate for Spatial Targeted Gene Expression experiments.
- A new command line option, --no-bam, instructs the pipeline not to construct BAM files.
Space Ranger 1.1.0 (Jun 23, 2020)
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Download for Linux 64-bit (tar.gz)File size: 1.2 GBmd5sum: 708b93997295db31bc457b3d9af79ca2curlwgetcurl -o spaceranger-1.1.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.1.0.tar.gz?Expires=1745741087&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=KEen6rVnxz1-GGgTqjuv7Wqtd3sXPs4gGeGZGSt-2eVmY1PUD0kqAYVJ2PZAktVw61nkNKxfyxkoggV1qdUkHEWNDFSi0eiq0KKhBQQ4HZhs~CLY2maR1dqa1foXrh0iqNgdLAwC9yjk7mruZvI6PMHH6AXOPAGRXPFJlPTq9fXcI2M9YjzNhWPlYQWRtEoA49evc4Ma6uGDWjveFPkQKzrcZLMcK5emnzpFgj9H0VuLf5EccLfm~hK58~VVpks6mz6UPLN4vI21znhhQJz1kxWTOe3K0qHzXmcVvvdoULKlU60zMjWws8-EvmRrswiROzERoHy0rMxZr-hJv2IOOg__"
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Space Ranger 1.1.0 highlights
- Support for fluorescence imaging input such as IHC/IF.
- Aggregation of multiple datasets.
- Optional automatic rotation of slide images.
Space Ranger 1.0.0 (Dec 2, 2019)
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Download for Linux 64-bit (tar.gz)File size: 1.3 GBmd5sum: 5cc7fb86d0cbff7df687b11575efb7cbcurlwgetcurl -o spaceranger-1.0.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.0.0.tar.gz?Expires=1745741087&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=GMgiHa6LftiwOLvozhDF8dWTtRDv7in3HvnDO-pHrYbQVIgeLcXT~5XISevvMzVst4udSpERjQVW9B4eEOJFfuUJLdXx~Ivl-f3O1Wu5YXwWRsYML0-rbk9RlT8tOJW2o4~GoLgpIk4-chAaPVRxMT33KIiBVO7LUPDIzJ6bEUGMev-2fSI9h9c8MAu1nCSalDeOwtFcTd16xtNgF7i1OMtUYbOSRElyjUp8kSe9JXR0ROsAoTZQZnaocDwIuYcfxl7BCG7xYDOWnijXNmh53TcNpFEORcWZ~Tryv5Vp2lrW7LXG7~sW4zIsEFJDfDuIRX07z3YJyNnMDYy89bQX5A__"
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