Previous Versions
Space Ranger 3.1.1 (Sep 9, 2024)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 827 MBmd5sum: c0b9a274d7d3692e28f086818eb55e62curlwgetcurl -o spaceranger-3.1.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.1.1.tar.gz?Expires=1753205262&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=l3u2UMp0Z~7DR7mJW4rwgKs1uZ7rb0O~h4O13OPnOhwgiovoiYlS4gKqtdDce7edhIEI4kIKW6mtS8I0yDEuOqAarl-xoc8-3c~IG8JFcQTzAVJGpUnY6FfikPKIeaUY1a5ky6DcCTtUGJGhp8nFgcMo9Evn8KEtADxywncScaTbqxbuTXDPYPH7SI~OoU2zVVQ~aN7sIX7U70biY9w0TXChF1LgPqhpKnBeS74Eyza8XEWvQf9PxF-iiJezg~-ELtBvnWNqYt8cXVD60DSHzlFtZF8XaqQPG1Y7bNpKGYxPEj0FccOp5lsJBMg6w-GYOa54NRcf~zobas5VCskv5Q__"
tar.xz compression
Download for Linux 64-bit (tar.xz)File size: 527 MBmd5sum: 4adde78374877cee92d056b903a77759curlwgetcurl -o spaceranger-3.1.1.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.1.1.tar.xz?Expires=1753205262&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=SVAzXUbhW9L7Y3DVng5fzx-iv39ztE5-zyAik-~xUhEMbLw3rTjxLDe5I1~Tx2IFkcbr11efG3khwiumerhT60TZtHhvrE7VanqmexoZqAdBDovkNIWrYasvmrKRfFUrmiKQLVI8PRzOkHrGUmqGS3BkRj3JzNrvFeNNKevJDBe8XgbNjAR~Ensu94cIFwpzRTk-lqaRoREFaovgqrgSwcWwULJJd4-pQ-DjZcZt0q3~fBxq8WN~YNAXWOYBMHKiQxsLo1ksQMvpaaEBz52fMfKZmUERd68n8IvoN4YF1H7-TRfQdEbG~JS0FxOMqS7fTGdg~s749XHQrIpxfy0Mdw__"
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Space Ranger v3.1.1 highlights
- In Space Ranger v3.1.1, the pipeline has been overhauled to significantly improve the CytAssist to microscope image registration process.
Space Ranger 3.1.0 (Aug 28, 2024)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 827 MBmd5sum: 13a2c82adfb1f1efb737e2be121000d1curlwgetcurl -o spaceranger-3.1.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.1.0.tar.gz?Expires=1753205262&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Hou0WwevuVnMs5Lp8xSIqiumcZNodE~gpoZ5d~~fTIUwzTfTxjwjWB4MAmztT95iMjLTfzKr6CrThdeMzKqCPFtSpUogziroY7WVd~kLjh9q0QYdcRB9vzyEH51LLdH~M1niki~tH6pqyTPUJGRm98OgBZeXvn~qdLmctLnmCWdRgJI2TlQOy8ceXfOOTfw2qs4M~vcKuoOdW537EZyqRgYMrPztlJydF2BPTQW-GGa1XUC~FAcWeYz4W9d5Xu9-5UtHVSI8dOZ4HoahiT72F-dqcR0trYNqr~yo2LO343G~32ixGrkAjtofNMYzQwJw3stsKr8qlk-ev~DNn3IkFQ__"
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Download for Linux 64-bit (tar.xz)File size: 527 MBmd5sum: 28010d3724e9effc488470a961fe39fdcurlwgetcurl -o spaceranger-3.1.0.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.1.0.tar.xz?Expires=1753205262&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=dpIEVtYH-DtCYp6SdgDZXGldgIPvtKs60cZJQrvkW6aCZvxkJmMv4WXsaI1kuLpOPt~6Y662EbxTexZfH4aWVOMn8hLp9kuBLMbYrYFiJCszdzHK2rtjtx-cA2ov0rLxKZ7ng1OqpluVyGRmokb2fBbQgq8AehqCuyDI-W1bCawPYpxVaV5Nh0HPX0r-KKfzUNuAu6LS4NP~3gOJ6aAa7aF~~nK-VUx-Ya6nHDfab8wHj8mYhAaXf7TYDkOh7gT2L2vvyCFJtHh5Ya0SjkrpW8RgeeGTa8qu-kM0L9zIv0qrSfvaeGTMn-T-P~VWq3e356W19zpLyLgRNebbjyD1AQ__"
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Space Ranger 3.1.0 highlights
- In Space Ranger v3.1.0, the pipeline has been overhauled to significantly improve the CytAssist to microscope image registration process.
Space Ranger 3.0.1 (May 31, 2024)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 757 MBmd5sum: ae65e7ffdddbb966277b7d1776f8c63ccurlwgetcurl -o spaceranger-3.0.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.0.1.tar.gz?Expires=1753205262&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=mBtCuu7SmNF5Ni2yLB~fdAXzXffvdi4qEM~BL1cBEj94qSYxf~XqJb4qdiO9ozn2d4~8y1UXI7pc47lBFP6OdnOcrBTiSDvNKDc6okYRzyxqmpBxZpczw0YNCvRMy6fw9YIpnUvacnwpfLQEMMy0H0Y8Gj-qYvm5d~oRylQG9GiYf~3IncCnRq9eUzxqx838WOoJlmjOHz3rmpkKbS91AhPLV4ZFwSg3Q71SdagjoOYwi~oPo8WDrXCuyEDwwN~4~YBLhfeud1esOgDPGx9LzgDmAqUyt8stz2vfZQD6RJLB9FGSUbFDFQAQTVEWxAJP5WWJjl-aCM2p5lYxgM3CaA__"
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Download for Linux 64-bit (tar.xz)File size: 481 MBmd5sum: 451495ee2074ff9adbac49ff8851ea1bcurlwgetcurl -o spaceranger-3.0.1.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.0.1.tar.xz?Expires=1753205262&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=C0Byn0z1WhTMKiG2PY9jGg8-g-w-pVWLBn-nXr9-MQUDVSfmIPze7~aBshlpCpZHTSapWqy2I62B-NknTqf3eVDq-MMsGR5vCvKO6~nsYK8umF3yzQBEVxU9L0k-vBBa5tvCJ8qw7IMvtOnUuk4g5cnyjxkUw0LTlMnS9HlL6K93nxcTvI6UWzWPp384sw4bPDoTsN6kYX2oEPH6GteYoiSA~5SXJ9LPH~uCkWReVtD73CxwXlGAQ79A-8L2ju6DtH6PCUJcD2q7Qg9w6mLQ5mKFA4rHvCGE61GnAX1ZWBIxdyJl~1UbNpuZdCZU71Y6jXBGRKDGrQ-JlD9~PgBD6w__"
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Space Ranger 3.0.1 highlights
- Space Ranger v3.0 now supports Visium HD!
- Space Ranger v3.0.1 includes bug fixes and other improvements.
Space Ranger 3.0.0 (Mar 25, 2024)
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Download for Linux 64-bit (tar.gz)File size: 795 MBmd5sum: 19f4443f10cf94aff5768bd8968cb214curlwgetcurl -o spaceranger-3.0.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.0.0.tar.gz?Expires=1753205262&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=KMvWsdqfKCHhRyeN2rwRikS8dAVY5wTCp0IXOqTpwY8mmETDshhXj5CIS7CwLVCGudf93XaayrooL-~6ovioMETrjBi3ck-5JWibXF1KHbiCQ16tDlOZYQmLeO6nUwei6E~d7dH95gOca8nir2ye8kDz~fL6VRxXNcFjKLfEDC-TbNF8mEvyhM6o-erh7ElQQjLQPke3jjcZy98FwKWo5xFPnIaH9~siyil50BzRsLhs6OPWEK0Vy9551He71Ad80LU7MQxWg3D2Nu2pcTOyMRPU1ENbNXrgczCJ-5eRLUE38a52kp96IRX7tpcZU4kyw~t3Ny1iPVT4p0Ba~lkMWw__"
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Download for Linux 64-bit (tar.xz)File size: 507 MBmd5sum: cd02b83fe849672066c40a1734819432curlwgetcurl -o spaceranger-3.0.0.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.0.0.tar.xz?Expires=1753205262&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=oxW9TNPByM~hFfP7BeBmtz06XE5-sf-sF1PVzlwgqh-15WDmfanO5YLGmK9xbdt2bj21Sp3iyGqJiQ8wQlUNGjhxsWspbo26UvuYcCvJ0bwY-N3ezCd4UZ85jAHRsN3VhdxlPF-yVz83humr5BNTsbTrSI4qqvcU1ZI64CX~Iz-VTYcZj~1HlgAQPxo84dNFhCKGEKsY~60BZiEuhZGFmL4xK0glTw5hgK0QtHgGD3~daqKelZDGnbwY3cHTz6wkVq~~yztWHuiHm8rgyqcHMBDyFSiN68fztmAQFMmCJryex2RO8NKBrvpEAT-yrFWhlAEOBN~6R5sZfbMdrqaQDw__"
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Space Ranger 3.0.0 highlights
- Space Ranger now supports Visium HD!
Space Ranger 2.1.1 (Oct 2, 2023)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 707 MBmd5sum: 0ef64524af2735bd2a0fc9eef5a605f6curlwgetcurl -o spaceranger-2.1.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.1.1.tar.gz?Expires=1753205262&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=BAlwqH3WRSV5SwuPDfiQmeZRLdOh3gEJPjGV9ESJYMdRz4te1J3ROHXxHf~u-72BtL4StGIleK~G9cnxz8bpNZZZByZhd7wGFztTLyez4HrmjV9FWgQbvZ4bfebix-nbxEv5KOMIp6LKxTX9GMLamx6EZplH92NF7RmXxCE2bK1drGJxSfRCZRUElRGmd0FodmxCsyCgUf9I6fBXInBPlgy-1kfBtFSLtTJ60rG~abi6YLAhHBWFKpzoePRJY5PrlwGOpNKxvTHZCiiznyLZlTF2YPlXV5IEu4153oeECNPcMEiNrw4FBs8BF3FZuKsmZYPPOtvnKLfDVzGpc9N8UA__"
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Download for Linux 64-bit (tar.xz)File size: 465 MBmd5sum: e1204bb11b3589bc5d5af244b51bfc18curlwgetcurl -o spaceranger-2.1.1.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.1.1.tar.xz?Expires=1753205262&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=dvK5nNUrc0uk~1eNdnpC024Bwt5omyR3s3CuF-v6wzof1XedIJf5AvKOnOUyh-kwT~Vqq7ghS~l2FcMlsG6dG7KA8GJerX232WRRDS5nUQ6nR~0Pst23-H38f3X5HG94zfBKfN0APhe5FPH-85ytlPIWc6kmg2daVQ9xFIfJd~JDUxwssYRyx94LHHol9dd4vjlhaiV4kAwZPqkkbvydZUpOVgOje3AawPAJTxXGrvLsBrdAeKkTr8psFoyBX2i3sWTB5EyR5~NnuO3pXGPQdQLYMCmcdM7x8HOwMUnqxza8GTuhy0sR74PDiAQY2FQrzeJNsUOhh3R-zHfa8HMgtA__"
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Space Ranger 2.1.1 highlights
- Fixed a bug where 8-bit grayscale images were inadvertently turned into 8-bit RGB color images for tissue registration.
Space Ranger 2.1.0 (May 16, 2023)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 707 MBmd5sum: ee94c453c44770b2b69d6be46b948e3ecurlwgetcurl -o spaceranger-2.1.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.1.0.tar.gz?Expires=1753205262&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=IrLmTpSm8vmKX65O1siqeFbWqYUxS2fauN5Aa2a9vIfyku7O-MjjfJj8BSvqmPo3ib~Gt331tLK9CwFnAP0XaZCDlc-b40sU8tCxO31BDfVOg65bbLbh6z0an-Dt8AFPvFiEhAaYt1x5hfs2dFSZYEyrZBg83YZhSPDc0QsBuiMmEw0nj48a3Kwt7EykQ~HdoUw4ev4Slt00MpFc4yW11XyMaD9WsNYP6qNITQo0cTws5wEZt2bbjp6PrfwqfauMI-bm3JsCyws3S6d3bozJDiPkH~an5RA1~6KcuYSuJX4XsO-Y3HFUo9Sra6BP9PMy4GvTbtKMXFGdcv4bq9svFQ__"
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Download for Linux 64-bit (tar.xz)File size: 465 MBmd5sum: a0d90129a81c41cbdd728e23a4d25161curlwgetcurl -o spaceranger-2.1.0.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.1.0.tar.xz?Expires=1753205262&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=B-jzcvNY1Cd8tjUzYsPKGwPh9-F1twbk4HGDrYKR0MF-ZCzPrigFuK3EomsJGk6O875E001S7F-cm5PMKVbs0wcybMjO--3SApqSawEXv1Ik~Bf9A03MyF-AFjNnb63d8FkEwiquGoslNlCmAE4-iDTCBeZP-Ie6HeQonjqLPeIzf78hUQph9C4wOoVHlMWmu80nSbb6ZQTZRqOJs3OMm~o--w1m3PrtXG5iAMXZEEYuBKxzxCKD27oyxBjtmGGc5gNkLMYiBPkmqDy-b19gLHDIByum-0m3QjEY7pi2pZlidG8YeysHUU15RlBAFlKE5FtcXHGnyG~eHwyx9Lpnmw__"
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Space Ranger 2.1.0 highlights
- New feature: Gene + Protein Expression on Visium CytAssist.
- New feature: Reference-free spot deconvolution.
- Added support for bigtiff (btf, tf2, and tf8) image file extensions.
Space Ranger 2.0.1 (Dec 7, 2022)
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Download for Linux 64-bit (tar.gz)File size: 664 MBmd5sum: 26151804338ae4d4b44151232bd64b50curlwgetcurl -o spaceranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.0.1.tar.gz?Expires=1753205262&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=cpzQPodBZxwOvovB8unvTiMW5YwstFZxpdbiA99UTyYPamA-Btuv5iRq4lU~ApUGPIxDnXRgVrYA6wmqifl8hhhIpTuDAL6G71LapdUWmuTtf2YOR3wkAWRbbm0vJiaZ~ORr0gxiFnsi8k~kdoGjtMeO~kvLnHrf7xcD6faSIhXlplKEJP5UbVn47q0Uso4XSwow8GhO~DLY56Tjt7VtyM6K3ibGSZLxYPNr9dWElbPWvfbX6h8a0n2O8tQwmC9RFtk5EzyoBJs7~27bL9HZeYWV5AzlQQRetEs5szEME64qAPeQxmKDDtENNf0LNBJUZyZf-l0nCNeIUAuxt8GtkQ__"
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Space Ranger 2.0.1 highlights
- Reclustering workflow now supports generating a UMAP projection in addition to the t-SNE projection.
- Visium Image Manual Aligner now includes additional support for images with difficult to detect fiducials.
- A new Spatial Enrichment table which allows users to sort and filter features by their Moran’s I value for Visium Spatial Gene Expression is added.
Space Ranger 2.0.0 (Jul 18, 2022)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 662 MBmd5sum: aec9ec128c7bc9fbf9fd6d31aa390d4ccurlwgetcurl -o spaceranger-2.0.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.0.0.tar.gz?Expires=1753205262&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=JsXTHDdd61XSehVYhOsDKnxjjt2U41G-QKrIsmrWt8GMlirtVyVaUpgBByag-dUDvrtXxwDAJISi4LFp0dsgNIvNDDP5agdgB0HXktZdp4OswdEh7IcfdZzysUgy7Zrp5wXtJbZRWlBybFXtYA-VKQw0PG5wCb3iHsB6tRyODzvX7BO1H0vuuKy5rlDzBRDNxSQSLQyA5GKbLTyKGtYB0bBURqG4zP4LzmXA~cuNvxIBTNCZCItqxZJ4-s9ZtkaVDRcnzhNmYDp1VLOLC~~uaKOXVt72dZfD0s-SJKQlYoveEkSTyD0l6L2m0021DXQIBzdcbmKckauu8j1O0V23jw__"
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Space Ranger 2.0.0 highlights
- Space Ranger now supports CytAssist-enabled Gene Expression analysis and includes image registration between the CytAssist image and the microscope image of the same tissue section.
- spaceranger count now quantifies fluorescence intensity in the image at every barcoded-spot location.
Space Ranger 1.3.1 (Nov 1, 2021)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 1.2 GBmd5sum: c2eb73125d9ee731fa825ea3734be1b4curlwgetcurl -o spaceranger-1.3.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.3.1.tar.gz?Expires=1753205262&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=RRyAYwwFsvQRCNVxXD7G2I8w61TCf1QN2G6XLpLw7jWyAmj2NBv9XMAsavGKXwFJ77kI9d87p~GHKu7eLWh7l5ESkK0Pc5WfmpK8ln~grHWijFAUinvaFsKgqieHCXuX-7SHnX5O1R9xqhAUWQaCP9L6GoM4CaXmfpDZT~FbtxuZXxRgWAz2OC6mo-kThCguw5bRzJozuejJaFHwgWeRHPhwEN~BDVxrhYhZuq5ezF5A~AcqfxXLaPrAl8nqO2sbgrbv9mF7kodW6sYOjvtoiFOWQoNhTJOPK9wcf7Qo14wxavCQEvXuydOnmsse7laujZf4GsXJlUErgKCsRMYV3w__"
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Space Ranger 1.3.1 highlights
- Adds an alert if image alignment would have produced a different result if the --reorient-images option was specified.
- Update warning for low fraction of reads confidently mapped to the probe set to be more informative.
- Unsets additional sysconfig environment variables prior to pipeline execution, which may otherwise interfere with the pipeline conda environment.
- Fixes an issue with mkfastq when bcl2fastq requires LD_LIBRARY_PATH.
Space Ranger 1.3.0 (Jun 9, 2021)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 1.2 GBmd5sum: ede7f98db5adf7785e35ae0508c48f74curlwgetcurl -o spaceranger-1.3.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.3.0.tar.gz?Expires=1753205262&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=LH99B0jI3AigQdM8DB~OnItIQYr1miGoljay1cN8cHCE3PEhG8lqGhMRaYhfsO1Q0Odcpmxm~dO7NEJqyiQrq-Zs8KGbCY8NHnJJvMnkA9aopsZgYv44lIVBNBSQ0yIdi~1bo~C64ObOcfYNiPaxO2umxxN-P7w9n3FIDEdxP5SWBQkQodRvHc4RvkqyOdjF9oBrBcYG4phiYaQz1y586NEWCr1ISa04ckSVtIBPzAQPonpdOD4bl0KYlFly3JASsOSIZbohk1vj6irW8CLwlrc50qvmdkKuw7bc0Mbl1e8ocM51DP~4nDySoK6svg~7CjeNb0kpvaIBs7D6HYc~ew__"
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Space Ranger 1.3.0 highlights
- The recommended operating systems for Space Ranger 1.3.0 are CentOS 7 or Ubuntu 14 Linux variants or newer. CentOS 6 and Ubuntu 12 are still supported but have been deprecated.
- Gene Expression analysis from formalin fixed paraffin embedded (FFPE) samples is now available in Space Ranger and is invoked by specifying the --probe-set option when running the spaceranger count command. Space Ranger 1.3.0 or later is required to analyze FFPE data.
- Space Ranger now calculates the Moran's I spatial autocorrelation metric on a per-gene basis.
Space Ranger 1.2.2 (Feb 3, 2021)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 1.2 GBmd5sum: 3280a085714ce7c894dc14b76312bcdacurlwgetcurl -o spaceranger-1.2.2.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.2.2.tar.gz?Expires=1753205262&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=HymX0IuxRwEVW99iOR9ssKCPh77VViwtgaZAzz8cPL5ACZwpJ8JxHKQGapuqzXkKXbx1mstOgZh2lmIMO1IjpMirPRkjak9dGXbDpvZFlYfKMrk-I0fbMyplVRYFPHVlwuvQNZV38O9hC5LRbK9~TowIBmklIA7G-2GgMrH~pUqAE5Z4z1XUztqW5aFAMGZLr91IBdHy9LI9syqg6er19vNPNTCRTEo25lzcHmnzZ1-3udi4ZDAxhZWaDk~uvIh3HUgSNpK~DzWlxi6DIisoxWzfpH8E~XhlWVLNTl2Ty2W7RkBiGiRe9JLKzNuCUImIYKAvXyGmH1gl85vMpeGzzA__"
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Space Ranger 1.2.2 highlights
- Adds support for pyramid TIFFs, or TIFFs with multiple pages of the same image at different resolutions.
- Fixes an issue where targeted samples run against new references would fail preflight.
Space Ranger 1.2.1 (Dec 10, 2020)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 1.2 GBmd5sum: c24ecfc95c5e4f1c268354c5934da98ecurlwgetcurl -o spaceranger-1.2.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.2.1.tar.gz?Expires=1753205262&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=EHHPKnHVSGO~BqJbEqEsgt2g6bagBhLnbAcQ-KIicNdSrRA0nS~R0xNVjZ-eNAoW66S8HKRbQIY5p3seebi4yGSgAziSfiFgEdr3dLzAd59uWi-QFzp39DvMULOi-oA4tNWT4CjiIjaZOTprnqKgCI6F6K4InHV1d8VhTW56UGY40qEQ8aO0MCwu-S88m0P0p7JUdCQIZ7ys4lvJsAxVde~xAvnWOFD0etw8AmxcfSN4Tgh0lezzXTR0V6aA53Oj6K1hr8z2ssjN6QOB9iZLvDZT7CdpE5vmI~G3nmVAm0kmLDA8gI9ACfdb9-PbBUrfgSmSN~PPl-xxPJOpILlxJQ__"
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Space Ranger 1.2.1 highlights
- Fixed an issue in aggr where files would fail to be copied on NFSv4 File Systems.
- Disables multithreading in mkref to address an issue where mkref would fail on hardware without AVX support.
- Better error handling if the pipeline fails due to a missing .env.json file due to an incomplete copy of the application folder.
Space Ranger 1.2.0 (Oct 27, 2020)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 1.2 GBmd5sum: fc21902700779111afc3c813bbb0ff5ecurlwgetcurl -o spaceranger-1.2.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.2.0.tar.gz?Expires=1753205262&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=dgfJTtaONokWo9uQWDI2L6s5xB779l9AApB0t5ojmb2Q0Qa5LNDQp-59dpsKix9P~cUj-0J5RK7B1F9l2EDyeeOBBQ7kn-ZtYrfFOFZx4uM42~QtyP9rkxjbXovVuz3dSf3w~IpZFCy7xXZupwEXmePSOEh0jEjwnObUqoKYVU7peKhmXLriq~swOXx2U7Y~o9vp6MBzY5sCEGAH7z1336xJ6CZA0nAe9Jr9x0DeTi36ucljDfL0hGpUa~vS9q4CQfeWi8t7iWujO6DeWQCXwtxp~zBXzXMOGuz5caun2YTf4T-ze17cW5HXNCAlT9II9u8b8xebThS9vKCD9~OXUQ__"
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Space Ranger 1.2.0 highlights
- Targeted Gene Expression analysis is available in Space Ranger 1.2.
- Introduces the new spaceranger targeted-compare pipeline for direct comparative analysis of matched parent Whole Transcriptome Amplification (WTA) and Targeted Gene Expression datasets.
- Includes the spaceranger targeted-depth subcommand to estimate sequencing depths appropriate for Spatial Targeted Gene Expression experiments.
- A new command line option, --no-bam, instructs the pipeline not to construct BAM files.
Space Ranger 1.1.0 (Jun 23, 2020)
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Download for Linux 64-bit (tar.gz)File size: 1.2 GBmd5sum: 708b93997295db31bc457b3d9af79ca2curlwgetcurl -o spaceranger-1.1.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.1.0.tar.gz?Expires=1753205262&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Qd-K7vC~iNs3rmh1~EieQFSfDWXr-hMgXQOGwUeJG-8dfMplb1VDtTLbIXwCfVQWxC-YTbDaH5cncZWleA5ab17jQni~fFgQPjnmEz9mpynaf3ijgILjvZ0ToFudHS147VQ2N7TiYZBA~kJfc46-0jIg3lZEwzqVyEbbv7pdTnhhn5Aovm4y2GAOPBcmwOOAXu4w-oPi7SBbOzwlBi90ct-hZjrhuACiVtCxVakv0VA1r3iq01SeQCGh62pirTKOFP1uKED1KSjw9bpTfrIDgYL8p--PZvEFwQaxlfhjOGrfUmB8oRSJ-qCgpPSQmyBKlwqwc0cwz~7APvxUueX58w__"
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Space Ranger 1.1.0 highlights
- Support for fluorescence imaging input such as IHC/IF.
- Aggregation of multiple datasets.
- Optional automatic rotation of slide images.
Space Ranger 1.0.0 (Dec 2, 2019)
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Download for Linux 64-bit (tar.gz)File size: 1.3 GBmd5sum: 5cc7fb86d0cbff7df687b11575efb7cbcurlwgetcurl -o spaceranger-1.0.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.0.0.tar.gz?Expires=1753205262&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=NrxMYZ0GTYrvmQFC449BzD0WlZw1Z98nfz-Hpx1mdxct87Ywe~OpSvnn9C3YnRXn1GqzIPxAhqzKpAQKF1lf2q64f5l8y7Jc6O1qVWGN35SHr6~LeByTVWr9gQxpPSYnSjulbg5EkYDN4Av7x85jkXcMyLVJBbcrHeV5iwqdvHz-SeT3btOkHEzt1dwzqj0NHn0Zko1AzNRTCAjkFKvkPifA~iqroU13jdTFwHp1BAaEPZcw4zaJKuXb1-HOme01HB-JoUMfKlu2Y0AG3xmLeBlfIIIy-QFC0K2pTR~IrkWqMGKQBxRwu0eBvcbzNpOsz3vcN6s96XNGRCT9TPuxGA__"
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