Previous Versions
Space Ranger 3.1.1 (Sep 9, 2024)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 827 MBmd5sum: c0b9a274d7d3692e28f086818eb55e62curlwgetcurl -o spaceranger-3.1.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.1.1.tar.gz?Expires=1743821677&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=gCbq0A~6wp~eypb0WB1noaD0U6aybZuxmUNfEO9hFeDayFCPmq7bAzoT6NXIIOYgAA~ApuXyU06Ig0kc8bqYeJI6Icne4yNMZiSUo~C7zlWW3nKmTQld7T8WKvHy1~-zZUBC2yJccjtzKeYUVQQRjR-83et2SpbiS5Ufm3Tb1p~blKFIrivacZmYyqKlm4ytvaAW8eTCcW5WahNQsStbCMYyMH9SfhtJIZtFoCAaT~yZgi8GznFv7w~gSmUXikKpfO894cx4SlBf-w0X8ePZQ8nRuh1CZM6wBjpKZHXuZt6RAaVJflitksRijBEB9EgSoozMypw~eGnTtti-SQwRkw__"tar.xz compression
Download for Linux 64-bit (tar.xz)File size: 527 MBmd5sum: 4adde78374877cee92d056b903a77759curlwgetcurl -o spaceranger-3.1.1.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.1.1.tar.xz?Expires=1743821677&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=hjlUGHwfFmrtJqnjE5rOApsNc1N8rd8UzrzHPG-y~L9TnWOh91azMTt9dvRhb~qSZSfZieYZpt~bMTr5IyLJeZb2C221H2w9K0yeZf7iDbGe9T7FB7wokTZ4lVuAwxl7nG80zZJN~KDbqxBbos1KzQM8Hh2gw7Yw3O0TsXIAnv0FPXrTVSPw9eps6wcOPwORMJ1iuT-TxWGBPp4YToHBBj~WyiG8KHlMQeujhuhGATQQDUhmQ7COMKQqLYBzt-68FBLfmVpeAmKA6CMdIKtnGHWhFK95VDAnxSiHglyoHElqrCwr29ao8X5R6AuorpDg6vc-ZiR2WbH1vVNqyHGRYw__"
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Space Ranger v3.1.1 highlights
- In Space Ranger v3.1.1, the pipeline has been overhauled to significantly improve the CytAssist to microscope image registration process.
Space Ranger 3.1.0 (Aug 28, 2024)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 827 MBmd5sum: 13a2c82adfb1f1efb737e2be121000d1curlwgetcurl -o spaceranger-3.1.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.1.0.tar.gz?Expires=1743821677&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=bKlUhheBBtb~S5PJy8wfMSXXyVCnGpm21wXHSbVvx6KxdxT8f~2VqLBeBvqcl3we~6bEBI4Gs-pd94sLgYm-3Nw~riWHvahG5uPAo23M4oiBF~-LYgmuDzkvSWXIhZ~rkIbAr97gRcVjYuVvziudWZnvbw19jvdZwvqA4e18GJkBElfPPuTiu0g5YdcYkF7qhZkj~zXi3UofJNBXCMKclZ-ThSr3wTWlqKOgYnxPJWQEd3vTfdQrfZiOnuHzZngBXcoegXRVdG0EIuD8Bnf2wXIB~wAhrUxeF7CLKThTmutGFw9yfKRxrnthYLZkKPT091kIAzJQw7sagrtZizSz4w__"tar.xz compression
Download for Linux 64-bit (tar.xz)File size: 527 MBmd5sum: 28010d3724e9effc488470a961fe39fdcurlwgetcurl -o spaceranger-3.1.0.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.1.0.tar.xz?Expires=1743821677&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=di86iY51CF8kt-zJOvHhbOPCfPt3b9bvKBVBZkgjSWz2jFlpVqOlSWnt5olrnNHXROVmkQ4JWhrP8Y5kie-Aa~Erxq0Xdym0~3ktL07CcF~etuV8ZUpOcRR0j~Mdvv6hiJk8TzWuTneOeKY21KtXIUytGN3pT6Rps5S~qgpUqNA7l8WJUgTOB1wNe7MGd-Z~fVaqzZlioQcMuFuqotFYLrLSE74hm92YPSeorrXMVuuTRpOhsfJ1p3lF4I~tUbAdCrN10aGUa9q1QKqe6K9ADRdB-R18BvZDV3QWcHpJWppYvig6-5fzHa20knAggx5enC6wf7TgdFjp8E~zarXX5g__"
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Space Ranger 3.1.0 highlights
- In Space Ranger v3.1.0, the pipeline has been overhauled to significantly improve the CytAssist to microscope image registration process.
Space Ranger 3.0.1 (May 31, 2024)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 757 MBmd5sum: ae65e7ffdddbb966277b7d1776f8c63ccurlwgetcurl -o spaceranger-3.0.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.0.1.tar.gz?Expires=1743821677&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=E87VajKGCdzXYWJLtUkOqKwSrvdZWlJVVrZzZ-VeS80LVvfqQs71Xl6s9dzl-VoccSlgQJl0vnLZD8quJpWh5IpdvdWmXE3yvCzsTp-fL8j-XIUx~nN~6jV0CjYoTVTs1~qlLFn7B5JdkM8oayKvrop5CVm0ItWgkSrILlU0mqBnz3d9BS0xAUSux8PwSXrj8OSFbAB6xBaXDfOqu3QMWRZrylAmOxOFGZh9wHD240k3ku6yYHPd7TqALs7QvjGq5vHnRDeq-Yx1VGRWqvRNHE3q~kZxkWiY1ACZDVM--TlAv4rIQAJ4rNPKYk2tydrCySVoE7FuyT6vFnENqE1F3w__"tar.xz compression
Download for Linux 64-bit (tar.xz)File size: 481 MBmd5sum: 451495ee2074ff9adbac49ff8851ea1bcurlwgetcurl -o spaceranger-3.0.1.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.0.1.tar.xz?Expires=1743821677&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=JnyT~U72pYk~RIm~7mIziBWzBYIKlPNkWAEt2C2Z-BflkWfvxa4w1oLz9xOFMBgFkTrXBxz~IOpd8q7dc7XUT42Bcezv-H6WQknbSUZyqVUdvtJS0A2te3G2ZdgRXucfcKigIiU1WkUkwhp~ZeAfxvlzJ6hLX937L-YmxvfFp98baDPZfFfvqqo9tHowGvQo6cFna38mUgdRCgDfk1JfZ8eBotw~McU3GAAOV0d8Cxvntg-z6JXN3DzgwSMYwYfKpW57MDFgQ2v2qTeqnvL2toEvep6AmvCpPXxtLZ3EfHz4qpebT0nWkgQ4sGr~nWppODIOd95UB3MWP5SGehUtQQ__"
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Space Ranger 3.0.1 highlights
- Space Ranger v3.0 now supports Visium HD!
- Space Ranger v3.0.1 includes bug fixes and other improvements.
Space Ranger 3.0.0 (Mar 25, 2024)
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Download for Linux 64-bit (tar.gz)File size: 795 MBmd5sum: 19f4443f10cf94aff5768bd8968cb214curlwgetcurl -o spaceranger-3.0.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.0.0.tar.gz?Expires=1743821677&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Js0ZDIAfKLoimnCh8PBD8GQ96YHYycj3vSJoz4sA8OjQJW2khMIEZfttRUydNYxGWKz~K0BcE7mpjNLNwftNUZCgKJcs1rwS5u5ijJx6vpW2PoCwLfgLDO7K6FtuWixCcTwqrZbDjHrO38PfYZZ42Ybd9lSppj6k-lodWgF7aYClolVc~yHfPV-UlHQhbZYGcIXUD~TglWbyXZRfHeeBb0E4PpmjPAncNmpLAQrNCzIIRcf6dAeildfvoKl8WvkjAre4nFBEtCAaITHC95yaiJJtzJdfK1vyNX6PesbeQ3szYZ8qZ8KCJ0-QFQRPXjmdkfgjOk9xiaOGRd7yFWMcdQ__"tar.xz compression
Download for Linux 64-bit (tar.xz)File size: 507 MBmd5sum: cd02b83fe849672066c40a1734819432curlwgetcurl -o spaceranger-3.0.0.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.0.0.tar.xz?Expires=1743821677&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=ZEMDP1blsdQv53QsyY9fzw44yDuiGWzA~GHqwqLEA1R5Ozf0CvfTtMDI4e09pBuCjFwKFTLbmY0xSlzAI1t-VbniQLE3HKCiIYZYA9DO~qd9-Oh0R1d3PSiN6KJIkkYyCihF6rDRhQSS1M79CanAZRSh8rPJLL8BUTCwumnYJ74ZaygpWgl~0rEHKDLXcB-7oKOzlNzA4AZThC-RofSi0NQcroS9G5CsbrsY1eNybtN1mxI20my38d~V4MYe6l8iquaX1r3XLckH1P7YhDXDz41P57WcRtmzIys5wTASlefvc15ITu-o3VnKMb8dJxz607CratnXQ6rHlGLYnhFinQ__"
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Space Ranger 3.0.0 highlights
- Space Ranger now supports Visium HD!
Space Ranger 2.1.1 (Oct 2, 2023)
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Download for Linux 64-bit (tar.gz)File size: 707 MBmd5sum: 0ef64524af2735bd2a0fc9eef5a605f6curlwgetcurl -o spaceranger-2.1.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.1.1.tar.gz?Expires=1743821677&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=H-hwoUmdQAuxvmanEyYhpluE-GGDdOuGTA7g6T3s1MZpePjvkjj2mhUaAitemY9L7fqoX5p3uqtxz8IfDbiezByxa1tdD7OBGOGAJa~e4NBQ3zjfA4lAC1auHecon64BMqES~HiNbqgiD5Huwb5G5bCA1RLpUU8ZZn2yhQsZGzZMsTflwowCcELVauwE5WcitawDl6mkgViJAImFfHYKVpXzah3ThVfDuFVjvIPgqm6xqiZ9JYdiDwpBkeTlhdTuUD15gUowz37444kGJ5Pea5~y4xBqxIWC06BgN2yoGnLjXaIsN6EN1Cb9LP7LVMH1wBM8aIPMC3fj-59Uwujjsg__"tar.xz compression
Download for Linux 64-bit (tar.xz)File size: 465 MBmd5sum: e1204bb11b3589bc5d5af244b51bfc18curlwgetcurl -o spaceranger-2.1.1.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.1.1.tar.xz?Expires=1743821677&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=eGgoBFEYSoAYvWIb4OOXhJ-RYIpBiM4v8EthmHfYK8I2Jjv1g4bUrBULzz2cGS6Zj9yZxGLTjkJiSaHQufDeJ8ymh5Vn9H~GvlQ~TWF61UCrqMkQwj4RZoGgjZUSWaeHW2XhaTHLJF-K4Z5fb2dDs4p9tWuHPNDlbO52pzvw7MR3LNGriJgRxlJi7kR17RxAb6SLJ1GBIlpsIoQ2QKFbMmzCG0AafDvhXUFJkiazjAs0w3t5LKDWlHvPk-vlAwMCVE-zV2wPch693t8jrw7D9YBILivACTCN6wztgET0-k9T94YNI0~A-~xFvXxdJTUfLBqm2J6MnBAmsuWy1x5UuA__"
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Space Ranger 2.1.1 highlights
- Fixed a bug where 8-bit grayscale images were inadvertently turned into 8-bit RGB color images for tissue registration.
Space Ranger 2.1.0 (May 16, 2023)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 707 MBmd5sum: ee94c453c44770b2b69d6be46b948e3ecurlwgetcurl -o spaceranger-2.1.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.1.0.tar.gz?Expires=1743821677&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=fHVFI5VmtnOm70EHzy6j4UNvpTsj-FU-7SfL4-HgCuavsj0mw5sOoKNcmHOOYNh-gL6O7N626x0eNI1APFNzIqjkuovXj1078i4KxeZf8WfLgj-wzMlQNgBa4mnguJ2NEZAI2kuGIb2xX-WoviToEEW5Xh9XKPhqIVdwEaaCjaT8wAx3wX6rzYPwp0INTw0c6l7JqUAftbDH9dQ-uyjl9KGDaSZ3NGjvw3-LGBuxiwdfwyUbMnmnwK-0qhN3GPje3MPzlcq9DA2p-Huj1CyBdWt6AJbt3ETdGDYm2bVszKT8GpjdaYh1O7M~P5YO5D~6WJBMAP1mINg7FerQQH4E~A__"tar.xz compression
Download for Linux 64-bit (tar.xz)File size: 465 MBmd5sum: a0d90129a81c41cbdd728e23a4d25161curlwgetcurl -o spaceranger-2.1.0.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.1.0.tar.xz?Expires=1743821677&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=cko75c-ztvrkPOSOK9KvZe72EdeVc-AVmphTeepJw9BjT04IaMNtYjYSarozQcY6amcf8PSDCp10IQJ1pI9mm3IQzTbU4y7Joa77Wi8olxCtUbtAFtYJph9QKqnL4ers30anXEMpDFOezO7TBp7D4bFxuno6pqPioJR9DDXZCBoBRUhxTPKUV9emzu4Sc7XKfeRCkZwzgVh-048~CsJ0xAYxLGKUasezUOP3Fq76Djh~5z0k9V19qB9zvFaU4d0RHvlupipKPIv9C6~yrc1PphyvVyiZL1FtAuKZ6Q5IpAbeoa9i0d4yG6Y4dI1s2tf065scbAOnKG~gmo7G4-eWqw__"
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Space Ranger 2.1.0 highlights
- New feature: Gene + Protein Expression on Visium CytAssist.
- New feature: Reference-free spot deconvolution.
- Added support for bigtiff (btf, tf2, and tf8) image file extensions.
Space Ranger 2.0.1 (Dec 7, 2022)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 664 MBmd5sum: 26151804338ae4d4b44151232bd64b50curlwgetcurl -o spaceranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.0.1.tar.gz?Expires=1743821677&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=RV8nWKMQNw6QL6X40ZYAn8ZsLmG1hbBIN9NwRjKpvnJMoqWfFRezFtvmIeceYFtlt2KeagsDo3hte8MwAufS90S-QAh0bg2CZclB4TulI-6ZNCEScIzrAs9eHa0keeqyjFY89fBeDIZWYPcFGPICcLkY~ZLMvp3xchs4lmI9cGRxvijcyQ0zpPATW0rgYEaRPI6uoZJTXtxvWGtFhdCji4M-0BkWhLWF3HeNPmUhbm7hUtAGRxI1YhvGTciUTi1K6ruuarGjFyiVG6CqK7ujB9XYYgrvcJaGpbwIYMXik1WiALNH~j4Wm2BNElfPnHe0Ry3TtKlAW1~A7b3BF0LbXA__"
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Space Ranger 2.0.1 highlights
- Reclustering workflow now supports generating a UMAP projection in addition to the t-SNE projection.
- Visium Image Manual Aligner now includes additional support for images with difficult to detect fiducials.
- A new Spatial Enrichment table which allows users to sort and filter features by their Moran’s I value for Visium Spatial Gene Expression is added.
Space Ranger 2.0.0 (Jul 18, 2022)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 662 MBmd5sum: aec9ec128c7bc9fbf9fd6d31aa390d4ccurlwgetcurl -o spaceranger-2.0.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.0.0.tar.gz?Expires=1743821677&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=KJCco6mHZHoPljw9jAB4ngi9Zu0hAVDySjIVMssn7CjcjjrbWTbNPfkEC-Qqt1J5iNH44A3EIUOdWVDAoYVyG2iAGyvhGpXoExKWEzJb4IdcnM9vISt9zpgbMTPDl8AXsI-XZB74JJPMNBYQSVkJa45K~oVBnUyS9XiQzeKZSe-ZT3AeC3ITMPWsWYF4Riz2gTqTW8sv4TsmgWK27a4itVbFN9bI4JCoXeoNZXKxxKrTa1DiGPBSR1yhZGv1iI2Pg5wr1QM5jSMgyN1NQiX4fmMLEtmEcW32c0QKUuR3oyfqU1ZZlrjIXzgN9J4kmjR8qV4W5hp2s3aUqmd~TsStLg__"
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Space Ranger 2.0.0 highlights
- Space Ranger now supports CytAssist-enabled Gene Expression analysis and includes image registration between the CytAssist image and the microscope image of the same tissue section.
- spaceranger count now quantifies fluorescence intensity in the image at every barcoded-spot location.
Space Ranger 1.3.1 (Nov 1, 2021)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 1.2 GBmd5sum: c2eb73125d9ee731fa825ea3734be1b4curlwgetcurl -o spaceranger-1.3.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.3.1.tar.gz?Expires=1743821677&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=DYbBELIJV2UblwIcxJW8Ebz9tBxuX4hBVCUfTvWD3JU1IK-Fg75MPRMnbxV4icceg0-iFPHDaYkxNyWIafQKtE~qJ~PG1UKVH64Zkr~wlr-g89e~Y02fKpAHqyT5xe4rq3YQAB9xv9IhdhcUq73KyLoPTlFRKPLG7nG-XR6JSPw22zMF16o9-s2GFmxuihgrQQ5UcoCicp1~UvAXLgBCd29n8dc7tQBp4i7SrcRaVVuRz4vYVQOOQj9ZZTd~6ftDbLvvHB29EfMnJfXN0En5xIAm6lcOFtV46OdQfpQvXmZb8sdkXbUrt-lxuhYCK~o3MuLqjhRK0DUrTSe7UhPA6Q__"
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Space Ranger 1.3.1 highlights
- Adds an alert if image alignment would have produced a different result if the --reorient-images option was specified.
- Update warning for low fraction of reads confidently mapped to the probe set to be more informative.
- Unsets additional sysconfig environment variables prior to pipeline execution, which may otherwise interfere with the pipeline conda environment.
- Fixes an issue with mkfastq when bcl2fastq requires LD_LIBRARY_PATH.
Space Ranger 1.3.0 (Jun 9, 2021)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 1.2 GBmd5sum: ede7f98db5adf7785e35ae0508c48f74curlwgetcurl -o spaceranger-1.3.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.3.0.tar.gz?Expires=1743821677&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=mcoRidLa6FiBivrd9VByZxSRXJx~07VEM6eRLN-rjHONPkzNJnP7fS~RGxOx2UFvFV-NDmlejOg2inka2LSVgRMmP~n6Xsmpx5CPGd46-S~EpNtdWeCslURpm1Ht3F3nTHLkmSV~Ao-epxduWKGPeX9CEKzI4afQrL8cSVMwVKePzxUW8J0LrYWrwvIxGKdz~z4jUm2LZCdirp09iuq6MvtYM7ZtI8GTNto0lcRKpNjjV399fQfIjos2-UDz3E9lkIYzPLw5x8DTq2aI2cSScIxFPkETmqumEWPW8ziNoJYzl09r5wSvBGGiKMc5b2DFOXDylCmSztzkb80vUaPrjQ__"
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Space Ranger 1.3.0 highlights
- The recommended operating systems for Space Ranger 1.3.0 are CentOS 7 or Ubuntu 14 Linux variants or newer. CentOS 6 and Ubuntu 12 are still supported but have been deprecated.
- Gene Expression analysis from formalin fixed paraffin embedded (FFPE) samples is now available in Space Ranger and is invoked by specifying the --probe-set option when running the spaceranger count command. Space Ranger 1.3.0 or later is required to analyze FFPE data.
- Space Ranger now calculates the Moran's I spatial autocorrelation metric on a per-gene basis.
Space Ranger 1.2.2 (Feb 3, 2021)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 1.2 GBmd5sum: 3280a085714ce7c894dc14b76312bcdacurlwgetcurl -o spaceranger-1.2.2.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.2.2.tar.gz?Expires=1743821677&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=SFifpGKkmD0-0ja8LY50M6v9yzkrY1IbUXEpBuDrN-G6nud1mmoY1Z-3vF2lfh4vuhBeAkyHeyEukltHVg1KIwiPNK-NIV6Po~QwAZQK0IdBP7pGox07mhfJ6HhAp-SyQZMAyhCQ2acw17r2xloIrgzMfbFriHpUR2kIVWy2Xm8wy7eAYbYGWMBuzL4zom9C0VWUV8ubq3q0~gyVVijupoVYmjeI9b4bLABTjj7jvhb91~vIP5gNYv~k~CLIIGJHxyUiiaY2VRbh-lwVfmBAPzXDTJfjIKlr32oQ3oGPmT6HxSdDRacAHG4izJ2FGfPbe74egasT1wfQXUnSgWDAzA__"
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Space Ranger 1.2.2 highlights
- Adds support for pyramid TIFFs, or TIFFs with multiple pages of the same image at different resolutions.
- Fixes an issue where targeted samples run against new references would fail preflight.
Space Ranger 1.2.1 (Dec 10, 2020)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 1.2 GBmd5sum: c24ecfc95c5e4f1c268354c5934da98ecurlwgetcurl -o spaceranger-1.2.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.2.1.tar.gz?Expires=1743821677&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=lug~fyIcy4tHJJ5onqc6jHwMvZoXt5I~ALAub1pGCpP6fl8vomwd0WgjO~yU6eq1czUiGBHPSlJt2u~ojMcVteQfEawW2kpbiN2Af2akSRMDKMFM07mh-SOqVUHOPbyfYenZLg-S3braQO7o5EWQaiANCnA56UZGQIqzqYrKZm-xEaGWMH9-9jKRTWcwlBxhVezxFXNC6xcGybnkN0O8MokBuahTZvejWNkCXS25JMEDo7W~z~DY6q9BsLukm7DO5wZpddyCOvIMO3lZv6WQlc9RKEoDvZRJb8mMZUA8q6sXSUg7058ERZ59E03rJMFY5Hnf8rdjVYjDSKoPN9XUSw__"
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Space Ranger 1.2.1 highlights
- Fixed an issue in aggr where files would fail to be copied on NFSv4 File Systems.
- Disables multithreading in mkref to address an issue where mkref would fail on hardware without AVX support.
- Better error handling if the pipeline fails due to a missing .env.json file due to an incomplete copy of the application folder.
Space Ranger 1.2.0 (Oct 27, 2020)
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 1.2 GBmd5sum: fc21902700779111afc3c813bbb0ff5ecurlwgetcurl -o spaceranger-1.2.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.2.0.tar.gz?Expires=1743821677&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=TLzhjnz0HX7aYURtuRyvn8VVX-Q80eLD2TCPkhqJgwGyh6KljxmHJbYUt2ooPdOuHzjgAREM3LbHSnWhANu~efsJocqpzzyOl9GuFyzaw3Hnbjsl8ouFsuXiMBDLc4hUjww5rDEs0pbKl5mLpT~9HvrJ5BdiJxdcuP8SUUxmK5bTHWgYHXLX-JjAZ5w5bDHcqSDJnlP5HqVjVnpN1oQOC-WmaurtfKym4UOcj-tz9AJfAxNtnGpbMdquukcrVPN2FZgB3tEFJjr5W5PVoG8jsPB64rdH62elaQysXFcYIckHFFkqNC-fOliaGd0aU7ex95dA9~IOA4zM~kmTcmLbUQ__"
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Space Ranger 1.2.0 highlights
- Targeted Gene Expression analysis is available in Space Ranger 1.2.
- Introduces the new spaceranger targeted-compare pipeline for direct comparative analysis of matched parent Whole Transcriptome Amplification (WTA) and Targeted Gene Expression datasets.
- Includes the spaceranger targeted-depth subcommand to estimate sequencing depths appropriate for Spatial Targeted Gene Expression experiments.
- A new command line option, --no-bam, instructs the pipeline not to construct BAM files.
Space Ranger 1.1.0 (Jun 23, 2020)
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Download for Linux 64-bit (tar.gz)File size: 1.2 GBmd5sum: 708b93997295db31bc457b3d9af79ca2curlwgetcurl -o spaceranger-1.1.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.1.0.tar.gz?Expires=1743821677&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=hdEhEtK9Tafx7YG6dN5d~FYNMuExdyyqTO444Mtc1sCsDuynCrTe-x5Q0-lrLbmycABCnHk45UkAl7LpOjJhV54PUEG4XQwIkQ18ketMo66cbEYv~rHV88sG1x5of1CzIT62XXnSjxR2bXR1yBsk81Vcv7jDP8ZnI6E9VU6mwOuwuwnzImImxUC2IUsal1DkzUDyjMkrQcLGw~vKmKqEgmdVHQvjnYv450yWw28kZAKR5gCxUd6T9kizg5WLLWU6I4ZThbLh~o-33O9LUn1uzVJJ390KRr3HtvMRrt8zqg8Msbx9xQ9oAuOz~gea3Yo~7t8MOwfHBhcSuypRog3xxQ__"
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Space Ranger 1.1.0 highlights
- Support for fluorescence imaging input such as IHC/IF.
- Aggregation of multiple datasets.
- Optional automatic rotation of slide images.
Space Ranger 1.0.0 (Dec 2, 2019)
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Download for Linux 64-bit (tar.gz)File size: 1.3 GBmd5sum: 5cc7fb86d0cbff7df687b11575efb7cbcurlwgetcurl -o spaceranger-1.0.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.0.0.tar.gz?Expires=1743821677&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=LpIL5eMVyZF7ATppvxlRNs55Wifcchj1giGsgsJQ0dnpNN2~IK6y0FcZnpRYQSc0P6TjeDYIgejhLoKWSpe2OpPlMZZ~NgccpFkExJy~PaJ--Look9yZOrztC9IWNUnlAz4cNYwuBVXQuKBu~KpyhCkmzCMYu92uUojbqp1Kciy18v6SFOKiieEnUZ55GPQtb~SjPVYccz01sWNR1gVS7Qed5-jNNeFf7T8ZacXZyA1ax2tsvzUAUYuuz2-oOCF4zBdfZYY-XtkyA-jqmcRf7AoYy6ghUTFLs7DcEwA1xqeTYEod8uHLXKNmHLwWoy7fBIIaWH-7Jjl8za4uQ6mgYg__"
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