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Previous Versions

Previous Versions

Space Ranger 3.1.1 (Sep 9, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 827 MB
    md5sum: c0b9a274d7d3692e28f086818eb55e62
    curl -o spaceranger-3.1.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.1.1.tar.gz?Expires=1751423950&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=R2Lq6vtSjtl4U~mTSpLZYlC5VuE7YNl4PVLbe6~JIr-gyQzLrRu4gTPpRKNNhz6kRgk6C-xk7BxmrdDId17-rq6GJbCg7V5QtStDF-IgQykHrYWWS83wMcoKgMDSJ8KFiTwPna0z1LW9qSiBjHrNKmw5531iHA8F506u6s1PMzTJbwb2us26RZbQ7MOcNLzTy6SrNlBc9lirbcaGk48PfzeguszeBw8r-C7Aku14YXZ4RfZ2M7dbPPMYtSMzr8h1otp-NYhMrVzfU8vk0F97Xc0yBf3aMynAftgW4Vn13QcKFuK8vbFJl2HB9EfE6cGN-ahNMthvaWOe21JmxBEtig__"
  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 527 MB
    md5sum: 4adde78374877cee92d056b903a77759
    curl -o spaceranger-3.1.1.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.1.1.tar.xz?Expires=1751423950&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=F7WDdF7ZrjG5~-qYql8h6kauU3y-eEv-7L5g7rb62~UAeiYYeTPNibzK0E4xETHtIOiBWkxETtK1C0Ci-Bwjjo-74LRZ5UGkpPsVCd5ATsp58KllRpG54ZcH2ybYpP48XLUu6gJWsxA200Yl-QicCVAxzmB82jTZKBnys-qCgSFJ6ThHTUWb4iBw0zP~fXHyN5ol5P7Mt~NN5dDkxeQlttNIv1n8pYUT4GO0vH096pLKJuev9hnNg5xkqp5hK8nWAHUYnsBrwL8WFYUfefG9z138BHjeRk9O9NGfsxxsbFcr--8ieuIcIICmXSzm2Y7VJKZcrQiistJ~NTd613rtAg__"

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Space Ranger v3.1.1 highlights

  • In Space Ranger v3.1.1, the pipeline has been overhauled to significantly improve the CytAssist to microscope image registration process.
Release notes

Space Ranger 3.1.0 (Aug 28, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 827 MB
    md5sum: 13a2c82adfb1f1efb737e2be121000d1
    curl -o spaceranger-3.1.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.1.0.tar.gz?Expires=1751423950&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Rjkbz8pMokcpNC7xJ2NOgO1SqcRs9ht~-9p-7YG0qSx0SxM~69V~Dq3DfuZv-QEVHLQnoZCxhc5JV-lOzmQvdNxHH4IP-Q3Y5jTIILqgcVutpAuxblIHUx1OJKrI4Lky2c3zhiJh7BI61xeb~lX8JMowPW56-fn7qepmRZzhlADQUewfTq3m37afh7L9rJTChxe48YkeomqD6SaWTjTvHJle7mmUkgRl~9MveWjLrHfq4GpcKt064tJjAfijzYFUtqPnC7u8hQpGzenUgj4DukfD3bEDKmlipyA-wDRyzBs5uw7OxKZe9605Xmk9Vvs~R8etQqGFvQKMV8~2wkodrg__"
  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 527 MB
    md5sum: 28010d3724e9effc488470a961fe39fd
    curl -o spaceranger-3.1.0.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.1.0.tar.xz?Expires=1751423950&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=TXf8w65oEOmCtzAfL-qJw6-p56TFvTQNyPsBKjOwmrSWpCP2CiEilf7KwL0RmjFHH64pnI2yw2MIq0mKy07~UkgUChXvItN6S7Ow30KA6BWtdbRFB9DvXYt77ZzuX1pL800BMWEySyvdoioB0QZ3FlZiP242Vc0vsBXtbNnVru6i2AuIRc4mSnNUoPjPdlFAPfCqGEQsGQ20U~1OYP-jwWkTqeYe2l27OqexwsF0sD727X9-sWHqiWKEFFRNdJWBBmdikoySdhmkspaV2LWpLh9ai2n0QNeGzaioRxVbH2hKvgjyKwIkeQyzeUeaHC9LcUSObteI5H5RG1XUL~Yqrw__"

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Space Ranger 3.1.0 highlights

  • In Space Ranger v3.1.0, the pipeline has been overhauled to significantly improve the CytAssist to microscope image registration process.

Space Ranger 3.0.1 (May 31, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 757 MB
    md5sum: ae65e7ffdddbb966277b7d1776f8c63c
    curl -o spaceranger-3.0.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.0.1.tar.gz?Expires=1751423950&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=HTZexvHfwsj49bJp5oAfr8kXPeDiMtqQL0H4yUrEOqRP~ZM9g-PhW2njALM8mdAumUBUsUZqs4pQnFYbKzYknIqckkEXUA1OEUXl8rVDPy3eTlAsLBiuq15E0sB-u1~8aG4ouHXS2nXrxLesp51uu2cSUhpcF929AneKxUVLIVfts9HKiV9GlsREuck80lO9G7UADsmX7dILGQutNvyfsRXO50ZjxX1q02QcjarLEyOJDpHLYazYy8nLVzrcUJgiAxLBnj9VqJaQ~pEHCUe42tnB98Alt92Ji20aEvre46tkq~n9gJ2SU5pbjRDAZUBCPDzS2FxgIi3Ia7V2tEx-ZA__"
  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 481 MB
    md5sum: 451495ee2074ff9adbac49ff8851ea1b
    curl -o spaceranger-3.0.1.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.0.1.tar.xz?Expires=1751423950&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=f4whHlUCZDFb9r6BVDjvjYk92qTIlYG0fNQCCX5vp4kgCNVzBLXrTKuNqMOZcY4BGfFlimvi~T6aLfcHU32PjPGDU7iIY09IPIwWdnGjalQME9irpO7qULFJJd6F2BRoIfbc9i9H~KPpF~8Q6VCgXijDIhjIfDiis8D8r8-UHxb6g1g8QZm9tBmdsglAyX0AkQPzTSIy7reH~8kU~X98FMnZtgnIYOBxaJZ3wodFlSLrR-~nENXrHDQdqHQ55BhsC0NG-NjFKizWWmzsMgYZ3rOwMrY~dJWuLlel0psL6Ohr3halPap2EnavDL988H5erA61krNVZpki6Y1NahNwJw__"

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Space Ranger 3.0.1 highlights

  • Space Ranger v3.0 now supports Visium HD!
  • Space Ranger v3.0.1 includes bug fixes and other improvements.

Space Ranger 3.0.0 (Mar 25, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 795 MB
    md5sum: 19f4443f10cf94aff5768bd8968cb214
    curl -o spaceranger-3.0.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.0.0.tar.gz?Expires=1751423950&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=htuVXnyxWDnUJ2TgLCl~trMw8Gy~PZGP8w0hS~bJqJo6IDD5FAalQEvQnnZ4Ll54ED1VQ5ylylNTuejahQlluQ1L3-AijOq7L-K7sXke3jKcvCl2T8jr-Co8QK8Ci-qL7pOG9p8PE36C50JBD60J5~iVO0WMQNyo2H8-S6jSMm~pRAkkOnDmB5B6nvLPuvLKODtwuFzAmCLc85oxXMKThrFHIQWkrJ-pLBSoMt5D9zsCxqeW1JAZ~CYRq-iJtgrJnaFPnkLgC-tZN~6e0jjlv-vEmOQEbUMF257dLIxawZkdVsyepjFzKy7Ptsbmc~~EL0GzfTbIDmJnuJH6pcUepg__"
  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 507 MB
    md5sum: cd02b83fe849672066c40a1734819432
    curl -o spaceranger-3.0.0.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.0.0.tar.xz?Expires=1751423950&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=GPbrIeQjirsJJHjkLph7qmEd9c5J1trxMTw4y0nByyeD~5LKrEBfwJpSWU-KhlAeQjtnviZouYMWp20TvoxQ0S1RRzCjzHpMSH~gX~EqGHuYP7HPOrVGGwlI05yzVBz-MXWmjGvbr18z8KX5toJvzCz5143p9X5NfsjnlXBjJZhKff1QBfE3-7YhtBUdAuHF1YLA2vYaNYpMyDAy3lYNxUs9o4vRkY670tKVvuH4DINB-2EuHyh2ng1Eaq3eCN2y6YAYlDcY9VMp6KHMtpbmRrPfFIl1v~UKNhQyrSy3Qzo9APtqrwzCTfwrp-KMKuWb1vk-wV8qPqJp8oN0MiKwrw__"

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Space Ranger 3.0.0 highlights

  • Space Ranger now supports Visium HD!

Space Ranger 2.1.1 (Oct 2, 2023)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 707 MB
    md5sum: 0ef64524af2735bd2a0fc9eef5a605f6
    curl -o spaceranger-2.1.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.1.1.tar.gz?Expires=1751423950&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=iLLv12qcHbXhPTKM14VXtq3UdjuOotxH5v3I6PvVLA0SH0C8mJsGZskZBDAJqSBgNWmyFPMTEiJWtW-U0kRWwEJz1rEqyQmPtb3W0XUnkx6joS8khVPzktcRgDtxT4-4XpxzeEIZSHBt3Catr87PnuiAtktk1CUA-lZ6jmPM5wdR2XA08DRcVShyHeWBHDL2Cj8u5wjtwB7YFTJhvt3TaeuGZsyV5elOKXTT4EvdFsiILdHI5XdGlSdB9JvdER8HtrJPodXQQB-sN2CA0vUqKDgd~x0KRyVDXi7H4a4EjrgZA-O1yWi6ZA~6IKv3P7ktL1-pwFHD332EPxrBX1uVbw__"
  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 465 MB
    md5sum: e1204bb11b3589bc5d5af244b51bfc18
    curl -o spaceranger-2.1.1.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.1.1.tar.xz?Expires=1751423950&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=K9B7ETKRx-XWdtFiqvc~g8ni2pIdpWchiGb1lr6qaB2HlOOskVfloW2ZG6P8x2hAUl~ZhRIInl5fld415f11eoS4GCNv1QQwWVZw-YNb-y-63o12DK9ggJr6GAZrp684OFgnrYkjET1s2B93-w38HT6GBvGEhWevktQZJkkzadLfPfwOtae7yJpQVAodBKYyUCsekC34bER-j-NQXyQ4uLMBKeVoHumdE~0eCfzo1FKyXRfXU3~NwIGFxzdTYlz51C13HgLcHePsvyB7sNhg43G6s1y3gjcykjBNamhsxDzFIR3yBN1g0ss3Big3XFd4GutkkIyM1qi9K4uxroknUQ__"

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Space Ranger 2.1.1 highlights

  • Fixed a bug where 8-bit grayscale images were inadvertently turned into 8-bit RGB color images for tissue registration.

Space Ranger 2.1.0 (May 16, 2023)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 707 MB
    md5sum: ee94c453c44770b2b69d6be46b948e3e
    curl -o spaceranger-2.1.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.1.0.tar.gz?Expires=1751423950&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=VyNXMyvNfxNj89ThJWLUVKRbT3nHHPL-A1WpQiFE5ZBU1QMK7STm08GBnGCrs9oCxO8dffEykXibzJHC59T6QjKQVsBh~n7xE5RHxrl8byOlgOhG6ZsbMckXWmjyFGXHrglz68bXwwRBd0N-nl~7ueNrgMdqMJk~ts7W-5CX~KkklXEYpFu44VzSr6VMEO~bDN-ZZXcvuacG6iKpzvZviteSy9hEX8sguPN7e~RJV-VTYe-E1o3xEgNmc5IZnlyq4hWDuN1O3m7dR1z7wiqqecz6Xb~224H13ggUtrOPprV0~9h69sS1YDWAI1Zl7cMUXhDYURRRXyuAsS3TvEg40g__"
  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 465 MB
    md5sum: a0d90129a81c41cbdd728e23a4d25161
    curl -o spaceranger-2.1.0.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.1.0.tar.xz?Expires=1751423950&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=OyOKWfLn3wSbVy2s8gBL0gF0FbTvW04qHPWEO3CH9rQoR5m6D93hoU9FGQspBl0QsmVzULjMfGJMCyPKLzXzdt9R~cXWRt8ZLyPeLLJQOlt3MUUO3tnVB2AIz9Fyu93wh2iA7-xw~fNjX7Q6~qgbH8HbMTGmgM3V1ngIS6E3A-PBFPj3L1dY~PV9UWCXnNJs30Tu2kchyN0d7-L1~g~96cbZgruJ-QlSxFBrbvxbP27~fVMBfCCW4IUtebC9ptQ5Px-tkem5tHsbtQI4uSa0IwTeNBqmIvPM1kpNVR04F6p3cvDWozcxg9wa9VDGMgn06rUXLCtx3ndrCy-h85v7DA__"

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Space Ranger 2.1.0 highlights

  • New feature: Gene + Protein Expression on Visium CytAssist.
  • New feature: Reference-free spot deconvolution.
  • Added support for bigtiff (btf, tf2, and tf8) image file extensions.

Space Ranger 2.0.1 (Dec 7, 2022)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 664 MB
    md5sum: 26151804338ae4d4b44151232bd64b50
    curl -o spaceranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.0.1.tar.gz?Expires=1751423950&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=LAXvmQjwPfy-5CqSyM~XywN2zm56PE22bhz9~3ArlSSfjZCSurGu4ym8GP~1LrDHTXa6g23wNTUoLoxdDblVhWRmiVSOnMntX5pyAVVjf74DSpRmTsfJfYUiYj7xjMIQBQ5OT2TNabW57WeDG5NBHQje1Qb0dqK8zFjE6-TO8ybzNgO3mnN7zlWZlkV3Yri~DkX0S5VO8Pt8mJn0dqseUZQ2EmwHOtzkn7wBVsVaZ9RR~M3QZ7dowtZeXTdokdIJaw1B4pqgkcU2ueobx2vJcf7zb--wSLag97hpBkSekd8C1SK5GFHolrhsv3k3rQaEt5oyWP339rjpIo6Gzp4F4Q__"

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Space Ranger 2.0.1 highlights

  • Reclustering workflow now supports generating a UMAP projection in addition to the t-SNE projection.
  • Visium Image Manual Aligner now includes additional support for images with difficult to detect fiducials.
  • A new Spatial Enrichment table which allows users to sort and filter features by their Moran’s I value for Visium Spatial Gene Expression is added.

Space Ranger 2.0.0 (Jul 18, 2022)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 662 MB
    md5sum: aec9ec128c7bc9fbf9fd6d31aa390d4c
    curl -o spaceranger-2.0.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.0.0.tar.gz?Expires=1751423950&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=bMoBLEINCPlregeHfBh5T1GF3y2~wHok8Mgw14HBMTB5D9DT9vaePDvVKU5-acwIRSlGWLy43-1BKlgcbIyhX2QC2cMQNPyoJoSNw4XIq~Njn97ldmR9QKmzbqXJZp0IEnd4ZAzzSsBQD2gwgX0o1oZ9-wDdyiAo9MNoPgSNZ3gZ3up4-ILgHoBj4pl2prHdnLF~C7wcjwWurpBCw3SZR8sLPMSTpsHvRynFdynqfivghjKQlzUg925OfO~9GZ7TXttylnEPVixLCw8Kf~AfpECRLNY~C4oh4g2ufKT64Fli4drNKuCC2zxbnjXq46wM~tZuoVJWMsdFy9YOewWEzQ__"

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Space Ranger 2.0.0 highlights

  • Space Ranger now supports CytAssist-enabled Gene Expression analysis and includes image registration between the CytAssist image and the microscope image of the same tissue section.
  • spaceranger count now quantifies fluorescence intensity in the image at every barcoded-spot location.

Space Ranger 1.3.1 (Nov 1, 2021)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 1.2 GB
    md5sum: c2eb73125d9ee731fa825ea3734be1b4
    curl -o spaceranger-1.3.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.3.1.tar.gz?Expires=1751423950&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=LIwVe3M4ecgcmNoZqR1vLW9C1QQpIcfus6WcauPN1qOPHhgWZAoM4qqFygs4OXyKDlSYeDcfRqedg~ENGI7ZnYERDJVLSjpr4Lj~fFHYRIOmkevCQrXI40~2-cTTgED1UFWAOyt7YuwLHnagBvsvQerOEVuGtCd55IvUQ-QTWl3rEUVEuhtygnqQxALBiZEqI0BrzT3P-DAg0FRGSvlDN40MpXw7~Yz-zpXEXymhx9axsZgO64wZS8HED31qeztQvzYrDs1jXvalPQI319cH5xfpl3NKPGACssJ6sHIhxM~9KCuan8w1grvwZCKGjy~Gr~jNUlwJN~eIAo0j7DUQYw__"

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Space Ranger 1.3.1 highlights

  • Adds an alert if image alignment would have produced a different result if the --reorient-images option was specified.
  • Update warning for low fraction of reads confidently mapped to the probe set to be more informative.
  • Unsets additional sysconfig environment variables prior to pipeline execution, which may otherwise interfere with the pipeline conda environment.
  • Fixes an issue with mkfastq when bcl2fastq requires LD_LIBRARY_PATH.

Space Ranger 1.3.0 (Jun 9, 2021)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 1.2 GB
    md5sum: ede7f98db5adf7785e35ae0508c48f74
    curl -o spaceranger-1.3.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.3.0.tar.gz?Expires=1751423950&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=TyCjh2tkZuTsAcn6YkL37EeT5njDBokuOCDFD1702zM6k0wSamtuCS1Jq93mzxkwYvFSaR7l-R85swHpT5XE4MePLIKJ~xy561wmTTM7FUYPHvItk5QBuBVUguhPjq1XRu6pk3jeJI6as4UokL-nh~e4rjzLvyyJF4JtCnr6Ga~TKgi89xM8daeNKwymLmAXbI5VbarcFFYR8yfF4pOdnle2sIIRY3~0hYz8u84fwkoZYVZblBfubks~TXXcqZ62wzJcdMPhgnDLGBZLaTHf2UUfRr8~6u6-omitG~XxlXXTgT7XaJ6d6ZTWS~MUFvABQePfH-VnahX4Ory4l-SMyQ__"

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Space Ranger 1.3.0 highlights

  • The recommended operating systems for Space Ranger 1.3.0 are CentOS 7 or Ubuntu 14 Linux variants or newer. CentOS 6 and Ubuntu 12 are still supported but have been deprecated.
  • Gene Expression analysis from formalin fixed paraffin embedded (FFPE) samples is now available in Space Ranger and is invoked by specifying the --probe-set option when running the spaceranger count command. Space Ranger 1.3.0 or later is required to analyze FFPE data.
  • Space Ranger now calculates the Moran's I spatial autocorrelation metric on a per-gene basis.

Space Ranger 1.2.2 (Feb 3, 2021)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 1.2 GB
    md5sum: 3280a085714ce7c894dc14b76312bcda
    curl -o spaceranger-1.2.2.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.2.2.tar.gz?Expires=1751423950&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=j7woMCy4pq3LHKRtQ9GTcNmF9P-WDe4heBtnCGdgDu7L1s3hCnAQ4R3NuqJCpiBp-3sEEHFmuZsJYuVFrrsotnYIIV8wCM2luAhY9c22T17eNJr2nhWhVbwrrTdsKOSzwBoHOGCbDdwE9HciYn-aX5cPyOFFVUY6qXoI-KzFT4D2DW3NcCCVju9~FAWBcFheOLsKN8-wHyvH4euRhAHkJ3cwRhJ8Z26T26Q7Qm-zHwXLrlxsS4KLrnZlDteVnB2Ncb1eAbR5z9UslvzEKmHRkEAphOgcOeXbzLnZC3KXJZUgDfco9G5qoZs~zQL06xRBwRsSS~wGm9saUEHnBuSSPQ__"

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Space Ranger 1.2.2 highlights

  • Adds support for pyramid TIFFs, or TIFFs with multiple pages of the same image at different resolutions.
  • Fixes an issue where targeted samples run against new references would fail preflight.

Space Ranger 1.2.1 (Dec 10, 2020)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 1.2 GB
    md5sum: c24ecfc95c5e4f1c268354c5934da98e
    curl -o spaceranger-1.2.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.2.1.tar.gz?Expires=1751423950&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=TRfuqrXd1QSHMOE4mpIkOc4LM3ySZBhaw2YMi1iE07ARFFaM2Jag37eZ3H9P~fV7ZQhu5wQjsiKaLYj6YlzuB7ARylNu1IAEFdM4wABk1d7xjzJVPpUECftBzAnsSD-TXl4Zj9aLKN6jsH5-povsWVYAmmogb38YYbp6pQCQOG6sRxbEPAI39q6WcIofgRBV4fsv1Kcrru3DOuz0ffX7wK15C3D52mh8LHO~8Fv8capGXJ~JibFM8YaiOoCtKPQFpmpt7da-NbpjlWUhaSE3jUWkKivQ0I1KsYYpOct1Gi29rNbReC0AnBksNtvZHwWq~hEUd2D2pL2E~AF589tsKQ__"

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Space Ranger 1.2.1 highlights

  • Fixed an issue in aggr where files would fail to be copied on NFSv4 File Systems.
  • Disables multithreading in mkref to address an issue where mkref would fail on hardware without AVX support.
  • Better error handling if the pipeline fails due to a missing .env.json file due to an incomplete copy of the application folder.

Space Ranger 1.2.0 (Oct 27, 2020)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 1.2 GB
    md5sum: fc21902700779111afc3c813bbb0ff5e
    curl -o spaceranger-1.2.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.2.0.tar.gz?Expires=1751423950&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=SQZuAN9mZJZFfhlTHY3Vo-2nM1bY8-dWH~j6wNiC4JBtMPpvs1~1iC7bISgbvvCwpYoDIzh5wdVDN7pkwEiz2HU9w2SFXlW7CcT9PKf8R21b0Xb2sGhB0EkFWnUvqyItpCjLP-vY3NSEeKoIyGCNlMaIMnuIQNQesHzXn07ce3qNFh97oKlkcv7J72-HQINX-wwkClIMc-9ZY0wngflPaQzGvhf41omHi-FRHHz1S5N3f7K8j6JweI4BsKPYYQdCEl8mmUjjOyR5kkKrFfOmfSu8qZ8sFPis0obmuEeyobwrCZ6pfWvMkiIyf6kiMzoDqdnhJMMWWXw~HnPHnLzwAQ__"

Download is unavailable on mobile devices.

Space Ranger 1.2.0 highlights

  • Targeted Gene Expression analysis is available in Space Ranger 1.2.
  • Introduces the new spaceranger targeted-compare pipeline for direct comparative analysis of matched parent Whole Transcriptome Amplification (WTA) and Targeted Gene Expression datasets.
  • Includes the spaceranger targeted-depth subcommand to estimate sequencing depths appropriate for Spatial Targeted Gene Expression experiments.
  • A new command line option, --no-bam, instructs the pipeline not to construct BAM files.

Space Ranger 1.1.0 (Jun 23, 2020)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 1.2 GB
    md5sum: 708b93997295db31bc457b3d9af79ca2
    curl -o spaceranger-1.1.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.1.0.tar.gz?Expires=1751423950&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=QMeF-w9WjKZObNJ9r4NSxOpMoZLpmF0q1kfDTl9FauED4coYIV9hwZcaz2ClU9ng9pP5pRmgrbCkwe71Qw7jFtbTT8KMX1ksAGNlcZX5rkhFpQWfwMmWCYtTD84Djy-aoCYRcb6XXmf9~RdX0My7z3ls7wDCyogU18whs8ZoQer5G1GZy58vbSZrneTioGOqKZLbof6rcX3mPQtiiJ5b3bh3gn0-stMZ3jMgEdya~V9jKQjHA~N36QBK4f2JGEteYOAFeAtj1c7EmrTxHG7T8Tf5MxQ3XS6PND-ffndfPYyAuSgfbm-NzCRyinZMylH3jTChua6-lHyAn--zPKA9vw__"

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Space Ranger 1.1.0 highlights

  • Support for fluorescence imaging input such as IHC/IF.
  • Aggregation of multiple datasets.
  • Optional automatic rotation of slide images.

Space Ranger 1.0.0 (Dec 2, 2019)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 1.3 GB
    md5sum: 5cc7fb86d0cbff7df687b11575efb7cb
    curl -o spaceranger-1.0.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.0.0.tar.gz?Expires=1751423950&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=GzwXLMWrp1kdhWd-1wrOco14IJF~5EfANqURvAYMubllZymE0LjDIUI0kBgvUVJ5yzRiBSBI0759whJLeGn8O9Sc45rAmFLofQ368nAyOyyJgFyVC4aFItv9wgTiG-guta3nzaTh7jgPFaYbTeUbhPresE5qic4W~JVnC8wuMdIjeLhNnIlkFJFt4oZLNB2~c-at15JMtRSNZrZNPY1OLGZ1DkKQvcMFYYl1RO~CK0RvztwmPwtRlHh9iSvLnInLq12741qyxbxHp7Hh4pGKEDK6CPQQiDG9yK52Zvaj9tWpKdhh5RmD3GAYyIK9Tg8hLS080Hxinz3xGB~drujUBQ__"

Download is unavailable on mobile devices.

Space Ranger 1.0.0 highlights

  • Initial release of Space Ranger.