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To set up and run Cell Ranger ARC on Linux, please follow the steps below, or skip download and installation and get started with 10x Cloud Analysis:
Cell Ranger ARC 2.0.2 (Aug 18, 2022)
- Chromium Single Cell Software Suite
- Self-contained, relocatable tar file. Does not require centralized installation.
- Contains binaries pre-compiled for CentOS/RedHat 7.0 and Ubuntu 14.04.
- Runs on Linux systems that meets the minimum compute requirements.
tar.gz compression
Download for Linux 64-bit (tar.gz)File size: 699 MBmd5sum: 7303f8ceee7b60113c9a0087268830cdcurlwgetcurl -o cellranger-arc-2.0.2.tar.gz "https://cf.10xgenomics.com/releases/cell-arc/cellranger-arc-2.0.2.tar.gz?Expires=1732272496&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=oFXFpKlDfTCE87L1IBNp0lTf9zEJPXqDrUGvWiHOvaih8tpqRbB4jPUw9YDXzJ9evJjkU3UqafMucgSWXhOrBi~IVaakoU8cNr53VaDInms2NjFlDpUX3GWjrKz-R1sZ1SEyuSNDDhAXhaehCtFOviYcu9scqJenIrAeHtSyeCV0kuHWrW2UTCrUNV9Tc3LxEYYavT6a4fZxsZsFfN2nC~QLaazzTOa2wjy55PAmt31fIBGPYHtvbEEti~Mzluabzji0k2m3YmOyekCq-jpv6XtjwOTcRBeVpS0d3uLeu7I3uuC2FJtX33cXdnrg23lF0ZqTab9Vkob-MD0W9U~VDg__"
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Cell Ranger ARC 2.0.2 highlights
- New feature: wavelet-based peak caller to improve detection of cluster-specific peaks
- Improvements to duplicate marking algorithm
- Improvements to computational performance: ~4x faster, 0.5x disk requirements
References
View steps to build references
Human reference (GRCh38) - 2020-A
- Human reference (GRCh38) dataset required for Cell Ranger ARC.
Download Human ReferenceFile size: 14 GBmd5sum: 2f12f6016197869e21e5559827002716curlwgetcurl -O "https://cf.10xgenomics.com/supp/cell-arc/refdata-cellranger-arc-GRCh38-2020-A-2.0.0.tar.gz"Mouse reference (mm10) - 2020-A
- Mouse reference (mm10) dataset required for Cell Ranger ARC.
Download Mouse ReferenceFile size: 13 GBmd5sum: a2c1cc9b8dff2a2ef36971d7c31c8304curlwgetcurl -O "https://cf.10xgenomics.com/supp/cell-arc/refdata-cellranger-arc-mm10-2020-A-2.0.0.tar.gz"
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Compute Platforms
Compute platforms
View options for compute platforms
System requirements
System requirements
View the minimum requirements to run Cell Ranger ARC pipelines
Installation
Cell Ranger ARC installation
View instructions on how to install Cell Ranger ARC