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Previous Versions

Xenium Ranger 3.0.0 (Sep 4, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.9 GB
    md5sum: 10e28b33f0236a5e62d615dcd921a9b1
    curl -o xeniumranger-3.0.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.gz?Expires=1749364163&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=jTlA6fetZ6ychQNrUj3b4OJxFZZ1juQLdSj7gMoyQzI9Gdkgz8QFuoEq0o8KoooDmXVQBrZDTjjubI3otxSHp3c79mzqx67mXwsi7o59DpvpFp8R~SVs7qChS2ipBTDDUvJYKd3DU0hr4YU86cQwar3IQ0P1ogYdkGgMEqIxKtARf3OwphhuIuxtA6zt9g-lr2ic51DQHJab~9hW2lKazoJFsnxR5ojoRnsP9XXZpPDZXKs5K~sIeoSnQ90eF7tyLOD4F~9b9xy7a9EsKfK-IjblUO5U8HFafOK34lS4QSAuCqJW1aLWCtS-N~~~n-I9PNATVKsTDGrlX8azRYYRyw__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.7 GB
    md5sum: c31be85a7e19edb8da484c295f3586cf
    curl -o xeniumranger-3.0.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.xz?Expires=1749364163&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=nYOsArB0dNBpz~7myDg-cdT3llL-Ue9jeI~ygSi5v~g~0BNllrqShg6JVXdeoEKQQznOGB9qOFxVGMUzXbKZkz9CbXNCZ34nsRrY6PjpFJqcbveopuDe9JAPYjgiPuSPw6bYpOBWSI-nJnCHif6PLM0mRYaUiT73Ke1-GmNhbc-L8JWB7SNpN41wu2Kk2DH-90VCGeV9F3wPjh3caHrOZtD0dn7CyWN3X15SsWIGCzUx7d21pjUBix7GIm0Tq-eencINjz4pgucwPWrKb-CJ79rZoGgTwnOQepLm7rOy1j~3d98J8e3G8WdZMKoRUGtsAzbyDet-Sh6PJywZY3Vj7g__"

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Xenium Ranger 3.0.0 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Reanalyzed data gets updated scaled transcript view in Xenium Explorer and analysis summary features introduced in XOA v3.0.
  • New rename subcommand for editing the region and cassette names.
  • Robust to corner cases of importing transcript-assignment data with empty cells.
  • And more - see full release notes.
Release Notes

Xenium Ranger 2.0.1 (Jun 10, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.7 GB
    md5sum: 45d207dc432226dc003a31a287f5ec08
    curl -o xeniumranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.gz?Expires=1749364163&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=JFIwSRyOojb-MGQoasac5RqDIhtAdfM~gX21zgMuKLTQZ4A7FbRZDia7bjty4Lqp7jo5WZGIC7wnIZsiOXxoCw0iyqz7PUvyAJ6YbFud0J4NLlZ-BuXyqscCVQiwLg89fsKJtLKGphPExh4VFvKctso1XVLdiRbYoeemQuZEjY7fkjiOCRXxfMb7FOCMpvlREYI4Gd0wVW38hUQ~Axv36LW2AVqoO54Ujfm1RNhhm2kD-fLpisykJsyPA4qmb1zxgaJir6c7KCGms8pnMLO6t40juFqtDxJHgbGksmbA7LJYKFDi6atW9BcSIFSNaraF9whvlhu1yL~2DIn1fAmc8g__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.6 GB
    md5sum: 244bdbb3d159ff557a7747c03ec487a7
    curl -o xeniumranger-2.0.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.xz?Expires=1749364163&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=CVNwmG~ozvTwlDHSYeuHzIsbeXEWVywJxumWPxIwRs~XE7n2o4YUg46EsoU8WScADNayWZgzYTqVB1nh9ov5tjZin26uKJJMKPt9QXbJhLoqo6TMGTnGXYxy-oVOkUN5~o-39O4~ZF2Igj~RXQp5Czl2OFLpBNwPTTffWgFFhA2mpn8~nH-MQB5CSL71dBLrhspZxSDvjRYpmBxajC8gK7dU9SAvQTSTPoGlbyQfRTWesFgnuWFL8b2MBtwYv9rkC7iASxzQrKt~LH0qSvSIP6TFjx0iy~8b4q-YtEFvYV4ZwhEYP4dszMBfoFL9RhWrSkIzx5xOwiI9n6wUU56sig__"

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Xenium Ranger 2.0.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Default nuclear expansion distance is 5 µm.
  • Enables reanalysis with multimodal cell segmentation algorithm.
  • Interrupted runs can be resumed.
Release Notes

Xenium Ranger 1.7.1 (Jan 23, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: 51c373964e46c041e08ba73888657edd
    curl -o xeniumranger-1.7.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.gz?Expires=1749364163&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=dTRrhZntpZMNaSIVa8WSS19TTf-pn-2unX3cdQqTTWO8cbDgzuizlffsleWSC68VPy73iP8SX-7~-QubHygWn0awAfMvSn30mg4SbAENGyy5tw8OHEU8SpZrYG56tviyp8Km2CmUdCXvFWyD6btbSYyjPVpGvqbPlkwH9IwRucY826Tl5EI8PAebG4K3o4lyz0TyyMuO0fGJJ~701R7YKWi8wlCOynPgnb5I9zExekEIF5qpZVIPHf3roEXm6YW446xtbPTbTsPp5YxG4rB2f~Pos1K7ymjp7ISUSdmE5WY5~vsERLU-w7Grod5o2xaPWNq3gF3XAhwlygRw6V7idA__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 43e6e4433303aae30973682dc5219f20
    curl -o xeniumranger-1.7.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.xz?Expires=1749364163&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=XlqZdYynL72PUwObFd7gh-MMcrPWcyzIfq09fh6NE41EnaGQpLDZzLtmLygNI9yj62-7Zdfn7u1YCHEYi1plJFsJnVA5D00oTX1jwIuSxOf-h2SJeUrH6rZ0bKK892HblCLQhQXXC6fowXtBKWkKTHb0yayhqmWfH708ulYqyFlzYLiEoXWb2nZszgBcXAb1rvJiA6cbP7z~~xo5KvgsOQEIJOZ2Bt8QJ2oOgME9~cYDKa3Wcgoy-rIRyASPTONpvJzGFYBAJm0lrIHoSKZXHwS~fZO1gN3UROv8Bi5f1FoIPFvz6fyHy243PgPFss9haihROG1s6QG6RNrHxH3R0g__"

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Xenium Ranger 1.7.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to latest version.
  • Image-based import-segmentation now compatible with segmentation masks.
  • Improved memory usage in the import-segmentation pipeline.
Release Notes

Xenium Ranger 1.6.0 (Aug 17, 2023)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: ebd970ceafc057668b9e664df310a5fb
    curl -o xeniumranger-1.6.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.gz?Expires=1749364163&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=NAxoAHg~KaCoYlAB0bfYLa7F9o2OnbF-oxq2Lqndf79dFLfH6Y18oe1t1rslmmoah8hENqJ8JrmLofooWGr2Dfg9IdfBACWYFOip8Wq~oPg1FwMMVZY8uZIb-PPRNBihQjt36pzqdBaScqFFv9qGD41uGsgGP5~3uSMpKU0Qc09~1VE34hnbNXRD34v9cPyhSpBvAhlidI6UWejYecn3bMJe80EM~2BqYKXvUaUyy4BpVzdMZkYls2KgDSiQt8hE2v1Dj2OZxHPnjWxqtfGegtlAkFyEZEttjjRLbK-ddSp8VLNT~eA-7o4yG~KE0ywGxssv-0nkng~pOrDSa3c8jw__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 6fa799cfeef91264fdc174ad43b6da3f
    curl -o xeniumranger-1.6.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.xz?Expires=1749364163&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=CL4kxBMm7Gf5Dt4oaoPVX0drFK3RqhfnJi9oe1BO26ujhwtGLDm7dI9SatGpme53-iAeb3l-JUmO5l7geeptvzUJdxFHwDzVvB7WzQk3DoJww4micagDpxkR~8s9t-7SOFFf0xkBv9~BbofUNaRqgVisrHpkuxrUg-b8cRsv8LRZ7i33LXWX0BsDUy0NofPtP9aR~luZjBvwgB7LfmeOW8l4D397CO3xRIsDjI95SeNd6RBN8DL37O6zA7zPfvPC7iAVu1QPDYoyWMWVh6KA3PKE1nMH7HBOLjmKs5uENkMi4ZdWwv0IGxazNzXzH~qGxb8db3khJnDGhcmjsFeFvQ__"

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Xenium Ranger 1.6.0 highlights

  • Initial release of Xenium Ranger!
  • Resegment Xenium data with customizable nucleus expansion distance and the latest 10x cell segmentation algorithm.
  • Import community-developed nucleus and cell segmentations in multiple popular formats (i.e., Baysor).
  • Selected the wrong gene panel when you started the Xenium Analyzer run? Simply fix the mistake by using relabel.
  • All pipelines produce the same output bundle as Xenium Onboard Analysis v1.6, so they are compatible with the same downstream visualization and analysis softwares (e.g., Xenium Explorer).
  • Backwards compatible with all previous Xenium Onboard Analysis versions.
Release Notes