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Previous Versions

Xenium Ranger 3.0.0 (Sep 4, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.9 GB
    md5sum: 10e28b33f0236a5e62d615dcd921a9b1
    curl -o xeniumranger-3.0.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.gz?Expires=1753304109&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=OzH7N-Iu2Z2EGYFmIKZ2JfVWzHbkPOltRktlWOGKjUbwk6jZfm5qvWXRcaVWpUj5PcqQwgRStZ2rYT69dF04KLiQdZrR5OCwcPkhoLcUMX20Qnue7PYfIwYq0tfcfCMf70t9dM7UCHDqkdzU7-zFYAE5GsF6UZN4g2wmkHEjZ8AVAf8HVGaOeM1l-JbPGouFMXtsmdJLXFnQL6zmp~rjGIoQpKrNvJt85d-IDxetAU4Lb5XMeWc7pjzNlp1Xa~IX2URrwcU1DzqNkvEMIjczp9qH8Rfc4rzvn1acrlk4SVLAwQcwSQA6Vv8Uwq-J7S6K4Po1yuj5n13sHUKpgpWl6g__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.7 GB
    md5sum: c31be85a7e19edb8da484c295f3586cf
    curl -o xeniumranger-3.0.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.xz?Expires=1753304109&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=WSwcX1wKiPdBQoWDT8~bRDP2y8n1LmJ2oBI34O1plhdMKHdCWuGX3sC-itMN13C7RhjN1~XjhV2stg5N4JmtoaMKi8cHQQr493WeA3PRst5Yd0XqhwArxa7-pc2O3r96HcjitLuGK1jH4vMfkcOLv0Pt4GpTbpN7lCm-H~pswOgpZLw4Ak8eFQ-7Vv69wrYxrFZIM5YQ57E1m2pMmLzEAVSTL0O9iqA9DrZmGPHDyclbwGPteXmmRTLfQuJyV0-uboTEuARv9HcjDa9fZK8nNXDQFGUiGuRWYxAdWmFu4Yas5LveckFr~DH8WkEK6yXENnr4Rj6vla2CPX15z107rg__"

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Xenium Ranger 3.0.0 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Reanalyzed data gets updated scaled transcript view in Xenium Explorer and analysis summary features introduced in XOA v3.0.
  • New rename subcommand for editing the region and cassette names.
  • Robust to corner cases of importing transcript-assignment data with empty cells.
  • And more - see full release notes.
Release Notes

Xenium Ranger 2.0.1 (Jun 10, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.7 GB
    md5sum: 45d207dc432226dc003a31a287f5ec08
    curl -o xeniumranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.gz?Expires=1753304109&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Z0j8-MDlBL5oaWinunBu-mDUILYHoDeadixLNcanhZrLmcgBo1Ixe6NwqVet-3DLq8OX~uUaHC6~WHXmxB-geoXiLqTIktiktpJOojnCGQLJ80x7YZjHzaoJR3Cv1aI5irVFP4VFMLMYdTBayMPiNZIyiITAYlWtM9OWy7BwV22L9ICWdNR~GMULTrQkrsohE6c3wUIFLgxXKVTgvqIj4Eos05~jKjE0n67hcWdKI-TOyfMQUNFyoY3mhcRgIDiMD3cYInle8tfmB~YbOjij67bYvxu3aVRh~IxE9aCxkwALy5uMdb0Ldsv0cFUJsyZOhMcrcyRyhY1~clw-VM9uGg__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.6 GB
    md5sum: 244bdbb3d159ff557a7747c03ec487a7
    curl -o xeniumranger-2.0.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.xz?Expires=1753304109&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=DP6zCglsRGNis3zysKVetSaWMXKxE~ThNQaJWnLmE4~~5XYat5FydoFnb2VOIkxRzIwbsTS2DaX4sZCBjARPB-AAFDU4RfvW8d2UwdHT8FTL3pE0~woAUauGErhjJJ1oMsb3esoELIqPbc4XVuJ1lMr~6Kl84htUEvhM4ciMs4xkzmzxMcYTkNo6gGFKAV0efP~FALwFxTNajwuMrJ0c9me-d-iK2bEaBq4E9IZrIREcp3DGC0jQzJ4~m2II0UO3SHs16FsSpE8g6FnfvLW-WaYTNEpycclzguN9zwt-K~BVG3Lqzb8N6qf9yYkVFQthf2cNnVpbrkQJv~-qFqRTwQ__"

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Xenium Ranger 2.0.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Default nuclear expansion distance is 5 µm.
  • Enables reanalysis with multimodal cell segmentation algorithm.
  • Interrupted runs can be resumed.
Release Notes

Xenium Ranger 1.7.1 (Jan 23, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: 51c373964e46c041e08ba73888657edd
    curl -o xeniumranger-1.7.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.gz?Expires=1753304109&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=i6qx95mRxt7s1g2eTf8IVV1jwDPtGetdYRjv8-XkQW8R9imZ20-vzGHOMis1hVAeAu0KU3yhMSX0Cuz5fVpioPAItKcqHImPN5XtCCKGRyrPG7tE6Mk7i5yCNoEEjUVv1TGh~B~dtfgzKUlLU4gsQ2vRqPxI9DLbrlS2J~0ed1We3AGGiLv0AZtwsr30O62TzeMzB0JZzS6jI7405whGvn0B488qwLk55Eg7yi83rNDKxWLb7HxW5~JwFdcm9aTvfYc26n6QnjUd7yu7a2KOgTNrj7UWy2CG8ZuzpRtoUCCShjIKBo~HMk-diBPFhzNZKAQCbyJsOI1W7Qynj5zgbw__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 43e6e4433303aae30973682dc5219f20
    curl -o xeniumranger-1.7.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.xz?Expires=1753304109&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=K-mSUsrIurrtM7R4b220NflDPDagD3bCTCXqQjkWGvcwqxcJ8IBWZKvgN5BSQDjes9j3WgXgd8y3YeuE2NqnoZCNhAWFOKaoxVv9D8MfOD607RhqMBqZGlrO7p4qxdVfXXBlNMIMujo2~w-yk8o~~9QYjoPkE5wb-VJUY8Gp4oY2oFgz74-4IBumcuiq248BhXUZYPuDrhHK4Lnko3UW1dpCxpu61W3tkQNAa8ZzeVHk3i4He2V~a6dsmUbbKyuRBCZkbmjtEgH0bE8j~pY7ub7trIngdaDcjyTWBT35tMmxe1NGd7PsblOZA4CJOij9zmquw1XUFfyeEYaKNSSvKA__"

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Xenium Ranger 1.7.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to latest version.
  • Image-based import-segmentation now compatible with segmentation masks.
  • Improved memory usage in the import-segmentation pipeline.
Release Notes

Xenium Ranger 1.6.0 (Aug 17, 2023)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: ebd970ceafc057668b9e664df310a5fb
    curl -o xeniumranger-1.6.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.gz?Expires=1753304109&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=dVsNKQTH~eQPA6fInjRl~UzXb4am8b9Za9DcBCrE9OCi2Bz3jt6KRZEuQgYSNznsmnUQazgQQYOTDqdNJ3eE2asPUYKkYMec~kRqoEwWtPDH5PhfZDq5fr9vV75g69c8FCfGVxfZbIuMPNykDoWYPe~4AZUGqDxkY14aUe60zKzDXqL9fQduydJ5NXX0pPnyMhQNz~HlPjJKQFi0YaNX81zjA8MpwpaA4n-KFI9~5raJt9nKhD3haIQNxhtphfHyXxTCZRbRiK67-Ak5k0OyN-1bC-7QAKiZHXV5u5Y658reDi5eF7fOgWJjUD7NhER207x6FRVtPaQQToMBVpt-TA__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 6fa799cfeef91264fdc174ad43b6da3f
    curl -o xeniumranger-1.6.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.xz?Expires=1753304109&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=jSRbm8TJWPYwydwwFhXViWG8asGD24JDnIA88Q8fOvAMoXLujQss63n~aDs-bUzUaYS-EpuhvYNjSUk2Tfj4ulR~ydJEuLEPH-CXx6RdlY1ITzJHGWbijR1vY9RZej0g5XRxXXtlr3PSSEorftXoRTFQf4UVwdc-hq7gwWyUgeRWUZvJPeKLzgQemKsMfEOLu5qCdEeTg201pFinawRJmkH~cYZ5R2daaK-rdUZhq3k~I8Oux-9TitmTA6wParLosFlw27~ik9s4YAf6k71DAfgzVUhD9tjetF5TuujcO4w9UtNnd6kCuJoYswEmhb6IPgaAe9EECRV4wiVkfRayDg__"

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Xenium Ranger 1.6.0 highlights

  • Initial release of Xenium Ranger!
  • Resegment Xenium data with customizable nucleus expansion distance and the latest 10x cell segmentation algorithm.
  • Import community-developed nucleus and cell segmentations in multiple popular formats (i.e., Baysor).
  • Selected the wrong gene panel when you started the Xenium Analyzer run? Simply fix the mistake by using relabel.
  • All pipelines produce the same output bundle as Xenium Onboard Analysis v1.6, so they are compatible with the same downstream visualization and analysis softwares (e.g., Xenium Explorer).
  • Backwards compatible with all previous Xenium Onboard Analysis versions.
Release Notes