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Previous Versions

Xenium Ranger 3.0.0 (Sep 4, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.9 GB
    md5sum: 10e28b33f0236a5e62d615dcd921a9b1
    curl -o xeniumranger-3.0.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.gz?Expires=1740256482&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=fNIS0HlfEUlgGaqJYkgr9ZMq3wQ9umbnkylRt-GxiCjDdSQxNENaWyRy6T6zggpB7iAFiQpfW7nUByy~VAG0eVZLnVF7KdJFQ-UYp6HvZv-UuIv3mBJqq4Gei9srTLbC4lrOa02iSBA0-KKaYQEIfzuvEDm~BTbM2QSj~f3-~sNGHq4rcy2twzbLjIP22IlembCX2uLC4P1~51V5IJ-OCYH64a4BYZTE433ycf5kDFeaEDhrDADzU4NCZ7jwDdWyPWuDn8wulBjQFM3uXXdhyCFEihMVLHKTOs0IRq0f4-b9E~yLEgQt-a6E1qdcYIr3u4jeqlyLyeuMJG-~fQRDMw__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.7 GB
    md5sum: c31be85a7e19edb8da484c295f3586cf
    curl -o xeniumranger-3.0.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.xz?Expires=1740256482&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=W5lNCqT~GxqF22MUb7KsP~9CHJPGJ4GU5RH0-5uUhOl35ddttdngajlsp847MCbeT4j9HZX~wtcbOHS1tcXpBbG~tXjI~MlCCwEORzFAAYAlk9-HVqLC8wqjiBnzUIxImuqvzfYAWwAk1t-CyBzgcf~q1iPPt1foDp6W2R-sjvuKxv500ZXOsYeOjbATK2n8MJJC5nv-WVbIdim1COBR7iy7k62r8pDqrAkoIxGsNs2u0GQXhaPdP67UaWYKzsCE~6fnLRwayGX7-KMA7J5ovur3G3grtpkphENLhGnOIQqn~07xlberhHYJY77j6mptQstU4U2iaFZmyZ40OIlZdw__"

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Xenium Ranger 3.0.0 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Reanalyzed data gets updated scaled transcript view in Xenium Explorer and analysis summary features introduced in XOA v3.0.
  • New rename subcommand for editing the region and cassette names.
  • Robust to corner cases of importing transcript-assignment data with empty cells.
  • And more - see full release notes.
Release Notes

Xenium Ranger 2.0.1 (Jun 10, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.7 GB
    md5sum: 45d207dc432226dc003a31a287f5ec08
    curl -o xeniumranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.gz?Expires=1740256482&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=cgdpOXQPzJsLQP7JVMF5cVrEl4kPGJYHnelMhKiEgirGVnCFmlZwj7SoQOqCNm5DvPiYF1ae71wtqc3w--OLApqy0wsBT2ElIg3-kYbmIy2ZI8uxYFn5f5yEEw-YSXWbgKdZCSOatzkz5JznqbMKRKWM0-pf4YTztkueqiDm7ORFOm9oA7vYubvK2fdLHXOkzglpWW24pie7A1jt3fS3ppgnotsoNJraJFBpHgarS3NIy97iK~f5rqZxle1qAMuYwXQw9~pEAjRoh9WDrTeiG6hJYQlOqR0pjeZlbJwc1j~7Ip~QD3YqWk80DVsPF-k-4WO8bHZOXRsWV3zJQmfPhQ__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.6 GB
    md5sum: 244bdbb3d159ff557a7747c03ec487a7
    curl -o xeniumranger-2.0.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.xz?Expires=1740256482&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=hMeaDEfcg7M7SGhn4oH88jglcwoqT3EmNXP6ANkZJPOgxLqSDEKskhZPdDX1I81mRVvAWty9~z0KkTjmEo40IFE2jPYunpWpT7x5GwWTe4UGJ35YaRTU4csLtNawbjZV~WEeRKa66fKUxdQaH~jW2LNEpy5Hr4zH2mJaYJ-mZJ5cqXOfh-gVNQkByil3Iggsi10ey64bqGSwV0xUg7VjsHeJBuMLra4eRslOmyA3DyLtlmWUBv8zNeqbhtme~siffXOD5SLJ7TkGb2E89yuxzVRXmYqSdGw4Un5HfPmUZWkwnkLBam9q672s5sMkvq5R44xTTlgkzldX0M6TXKt39g__"

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Xenium Ranger 2.0.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Default nuclear expansion distance is 5 µm.
  • Enables reanalysis with multimodal cell segmentation algorithm.
  • Interrupted runs can be resumed.
Release Notes

Xenium Ranger 1.7.1 (Jan 23, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: 51c373964e46c041e08ba73888657edd
    curl -o xeniumranger-1.7.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.gz?Expires=1740256482&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=jbr21VsTCqyCLuX-9te~wuus0B9r4VpvLGSlknTYhbAxsvXrS-j1QU2gGQR~bD0kR6XUhZNnI2v1cbtPTy0i90y41tdU5TIHICIE0hG1-XfdDe8xOfx3qPAXfPiCF5BwQ5Pj0uQXKDuptK3XyvwxKsQwwWDas-1C4A6YLts9lb2C2TnnSCMa4oJDvJpeuZaEfiBX7gYduIqr44HkibhKIFUdSoXX8QzoUEYFCp59uxCxKoXoeMhE8IFqzh9sESK03A2l~BhKg2yBB97VFP5cMmRy9aL61b0BqpKaJ59bB3Cw2~l0TAOFP1rt4MuCE6lsCqfhjhxerWLYQAA5N633Dw__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 43e6e4433303aae30973682dc5219f20
    curl -o xeniumranger-1.7.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.xz?Expires=1740256482&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Y2fzIJVzzgSHeVWDLCEX0~0D9LI4LvPcumix~jagokvtV4FSpdx4mTR85mSwV9dcvq3~u4cTmGq6sOeUMON7lsnL8OnBd44xwxopV1wX8TrNgB0DdsiKEC9ZLINYUAkuzUxM8kjCDYUgqFVMG8n2JTWdOwjHdZT2hnOvQrW2JOPQdurxRqC97RwR-~2RXsdiZwMgj0vluwii7m9www9E6xfy5LOeUBmfRS53kb-2GuP3hmsKDlVWR9zTw09JBoMlQVsZGvPbxdl7aJ-CqahZcn4lL3vc-v8DoX86ZxfVfnTdqvLBBmc07f4QDYQUFGugBZfbzX-TwZTOLI8lst10YA__"

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Xenium Ranger 1.7.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to latest version.
  • Image-based import-segmentation now compatible with segmentation masks.
  • Improved memory usage in the import-segmentation pipeline.
Release Notes

Xenium Ranger 1.6.0 (Aug 17, 2023)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: ebd970ceafc057668b9e664df310a5fb
    curl -o xeniumranger-1.6.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.gz?Expires=1740256482&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Wqej8rVel2pYV7ouU6FnjWiU7vmTLNpvFZ1dl2eHYc7U6pDp28UiuzoMCK2tuq9otPaBu7gBSNT-KXDnXo8kkf51IkOyvliKeTf76~f~0hwoNbKHcMs957sPpLl6DHQRAuwztCeEd9qsefT6mTu1spUBjNjKclkxdTlV8XE4OjAg-gcdaMvMgMrjZj~co7OzHdNeF2CZUb~O-XsgNhIy6-tRFOA3Vf8cxEbRu3JTO37-cMVLVx695w4R1kXUM-VjoBSax1OrIAg8i99jbGcmINWUSTwjgOHwxEJicSJnUUwCVq9Xux~6~Hs~zcoSlr7yxxlIWqTu5nm7ZxHMl4fHTQ__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 6fa799cfeef91264fdc174ad43b6da3f
    curl -o xeniumranger-1.6.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.xz?Expires=1740256482&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=P3eSDOL~0MfH695UvLGo9eV5iUpFhxqUX54Gw1XRyzX29hAdztxtqDcFd~TAzmBG6x6zDRBrsirjD2s681gJA9fx~6p0l-8sWGQbWR5OSclqAPJjR-Mb9J7NPD3rmO1CXPlDaup06RKIFMfKkjkoZ-4gF5INAh4LBBaP0Z40eyLF0yw49fA2GP68CWScRJdfmHG5CpGS2s1F2ZALU6bZrvRff3r0mE1CSYySRZx0370tjktZP439rKBavhw-y5Zt3mTAFpj~u69S~-KxK5e5BJdsH0~PlAJTx1elLcCR~hqcy~bdGgJeLhMpyaSxcvMFawv8C2XhCXeYCBRNsqhwZQ__"

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Xenium Ranger 1.6.0 highlights

  • Initial release of Xenium Ranger!
  • Resegment Xenium data with customizable nucleus expansion distance and the latest 10x cell segmentation algorithm.
  • Import community-developed nucleus and cell segmentations in multiple popular formats (i.e., Baysor).
  • Selected the wrong gene panel when you started the Xenium Analyzer run? Simply fix the mistake by using relabel.
  • All pipelines produce the same output bundle as Xenium Onboard Analysis v1.6, so they are compatible with the same downstream visualization and analysis softwares (e.g., Xenium Explorer).
  • Backwards compatible with all previous Xenium Onboard Analysis versions.
Release Notes