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Previous Versions

Xenium Ranger 3.0.0 (Sep 4, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.9 GB
    md5sum: 10e28b33f0236a5e62d615dcd921a9b1
    curl -o xeniumranger-3.0.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.gz?Expires=1737237437&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=FKl-hO2Qf-QPfNCPDooa2Qt9nuYPPHEcSS1plp~2fP6JOnglFpj2CQwoE9CL-NCyyUaN9u9BXcKko9dFLr6SXDFwosXX92cDp5d8rvy5IF8I8Hy97jM7tb2D8oamqrKgYQEMiURfni8XghQo5grmILS8gmjgoRPIj8C0z-pMd6FbGQ6s0TekhqypQhAvhIGxB-TBuPyXyROiBV5BhiQDosPq2qCb23LNqMMM2HcCsqelHC~P1nUIS4trmNC80GdQ5ibyDhd~PqzxK0ONghZgzIswE~aY4P3WkmlOrSLDw4XQfmvzZxHsa8IlCzrv44Ww86g8w2EddFIceIuJ~xKlbw__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.7 GB
    md5sum: c31be85a7e19edb8da484c295f3586cf
    curl -o xeniumranger-3.0.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.xz?Expires=1737237437&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=D~WIxhiA9lXBlEjgsc176Q3Q1kVKQVU42f9J1GKBE7aGzNK5XWBxjNJ3fZg3SKNS6w~dv5~9FLXChQBmVauS4QZcaqm3Ysn8r0u3REJXqnULcmEaN2j3eRMjuz2lS8RCVU46QXHfYbm~OmwxWZy-kvYJ-VTywybJxtfA~V8rmUxcn3PNH-RhyFrj4FKM1qpuBzPktw0Ryg2QzXVn5ZyZ5THfdoKHgKxdKNn6rUPo6uYuvRMm9vwuac15AxyirRKqsJZL3rD7GUQsmfV7JHEX0e2SJtxKM0EIRxpt1kjULaxRi1MfygeKqUZUMb6UGF04v9TKY-lKR45WwvS8cA5ULg__"

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Xenium Ranger 3.0.0 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Reanalyzed data gets updated scaled transcript view in Xenium Explorer and analysis summary features introduced in XOA v3.0.
  • New rename subcommand for editing the region and cassette names.
  • Robust to corner cases of importing transcript-assignment data with empty cells.
  • And more - see full release notes.
Release Notes

Xenium Ranger 2.0.1 (Jun 10, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.7 GB
    md5sum: 45d207dc432226dc003a31a287f5ec08
    curl -o xeniumranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.gz?Expires=1737237437&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=LslEfwepx2XLbHZ~mFBP8MG8xKfePOucbM7MPLgxUs0bRkxEPBdLdrMcYbkRMtjOfF9-lMn1zLgtPIjyRuaxx-pGyq3wlsJcYSDW2aNTqN~2hFcDYQfl89Oyx1Nrc1~X3AeYIECOvqUQl55g~6xzhIpeQwW3mF68I4c0ox051vs4yLKGRw7~mkrwZj~DrHLLrmivEYKHq3DpE4uaEfx9~IIdWDraxHdNanAa4FZsrvpthXOBMJGRQakcSgsNySy8FlaAZhl5jN5AfoAHGR8RfSJbthzHlxpZGAv8GzAHUbexIrVZGHqBN~e7XUeFfk4h3LDHIEvrinwqsJckqxk-6A__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.6 GB
    md5sum: 244bdbb3d159ff557a7747c03ec487a7
    curl -o xeniumranger-2.0.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.xz?Expires=1737237437&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=RbD1GQk4dcil3QatNon2pftGy0Z1~b182iaGT26JN2-pkVMzu1MpcENUmo~HkklU9~Mp7TCT3o6pXbgzDNuRizneLzvDSUjDQeao-00Mqfef9n3V6fISs00e0OD7Uf6RtGEx7e0R6waAdBSsfmAXVBmfK8Sfs4ZVdZ7KUrmmgpumbwb72mdKnu6sO~8oZrCr0g6pAKai0FOHQWV6rv2sFpQq7nAfPecrOxcuGW3PWN6TWP6B~eSW1byMqzJKXWo9a7NTIvctM9jFapPEFDWcbcH~hmOIANyJ~CzlzYqSwQMYVXrJopELL7QrB2Hp2Lmytx1rLUThcBeDtGDNcCDiTw__"

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Xenium Ranger 2.0.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Default nuclear expansion distance is 5 µm.
  • Enables reanalysis with multimodal cell segmentation algorithm.
  • Interrupted runs can be resumed.
Release Notes

Xenium Ranger 1.7.1 (Jan 23, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: 51c373964e46c041e08ba73888657edd
    curl -o xeniumranger-1.7.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.gz?Expires=1737237437&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=H0nXKnEoqT960Ep82GU1yIhzTD06lojM7LzxcuoG8W53LOyHKolQZVxWP8t63yx9lS1nAWw3lvsYx4gg6AG8W~X8qhAAXtRqMC6RfUvc96fUEhQjgpHg6-WBbXn4MmQlHN4tl1LU-C6VOGeb4qdqDeIVrLSRX6acoen7X3rEDvBWk0ErRm4UyGjWPsnXqW1CycMkunEcS1NnPu9hlmGLq~5QujQ-BSavEXB~pRdUBN5r1uDfi5JcfVr-6ft8-bdbeeMyuV67tQ2NC4Zquk7jAQQvDGsIxKuoTe3U9yHc9Zf4JYDo04pgEV44JkrdbJKGTutbjl6JOA-jednPMz8kaA__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 43e6e4433303aae30973682dc5219f20
    curl -o xeniumranger-1.7.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.xz?Expires=1737237437&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=B-6Mij8yeGEhVCBDx~XKGtdNzGPKRqXbJ3RLdoJXwgPCgd1HELOAHTEz0eHUsdWaZwbtuRJP971RL4yiGfPkxO7On65EJqlCESesutmHKQHd2CjiNr29F1xJQn3vfP6HsW7zQ3~-9myK3gYGC6ufEj~S2xZdK58W6SpgrrvZ9r8rwotL5TXjK-kw7Xe8HQCXzQXFMrG77FC9s1TMU6uQ4vqrn7MCZ1WjsvCkoMT1efc-p95fPSiO-ZTqqA1L0Vwp5Y1IpIfhJwfANa4rBMHy0aNqv94awX3xvSXauMkT8vd6as-dogN0t0dbDQ8b1ptZkcrbPbiXdjgVnjVeW1~3nA__"

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Xenium Ranger 1.7.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to latest version.
  • Image-based import-segmentation now compatible with segmentation masks.
  • Improved memory usage in the import-segmentation pipeline.
Release Notes

Xenium Ranger 1.6.0 (Aug 17, 2023)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: ebd970ceafc057668b9e664df310a5fb
    curl -o xeniumranger-1.6.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.gz?Expires=1737237437&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=BAJsKCyDfHm9HOTIRdEHgkcZkN5PZShVWDk5Qe8q2z5Vyb53OkR0wALdgZBB~yDzlwKvbvIjomps6lvOg-0HGdHIUQY7DFATKWdd2y0z5xD~dibj2dWL0oweGJ3GFXI0x~Oljn3kdN3UIQD47wKPh67CqEM~AoImDTZzjvwlOMJ~68XGerDoPfjLE3nzjmQCvdq3GN8qv1fEKK3eIw4M94NtJ3pPd1qhwqCQ7q1tCJJJEyIGMPX5Fi4LT6Gc4E6prYzIDvL6t03xtThnuDGrkbY6LYVjNh4ZRdf7kDoWK4P5NGYajkHN3c0QkALydgESJ7jFsblY~RRsyFUAI2Ta-A__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 6fa799cfeef91264fdc174ad43b6da3f
    curl -o xeniumranger-1.6.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.xz?Expires=1737237437&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Eh6jJLsBncUYseh6CSY4cDTBMpPBJXNfjpFzHwpJHxe0Wgo1U9PoOoErS5ywOVwFIByZ1syug2tOsBu6leDuNgHMnatYWXFGe1eCV-a9LpA8iRtTH6KX8548xpZPqdlPXM4BDuP-gpxlmHWFH8anBPqVgVCuQK~WjlBP0Fke9i-b2uzS0ZHS-6qbjaokBtoYBmJNQzr5Bid~Kyr~78T9foYWOXyqccJ1u4CC~~g~oIFE5sPf~J1E45T7Gep-dUdsQyygqW2XTaUkMqXrO-YN21iu~YT0xrDIG6JW25eyjRCbyBzamkWEPLsUPL4AH40Sm1~r1WaKiJMRVBwKnPoJPg__"

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Xenium Ranger 1.6.0 highlights

  • Initial release of Xenium Ranger!
  • Resegment Xenium data with customizable nucleus expansion distance and the latest 10x cell segmentation algorithm.
  • Import community-developed nucleus and cell segmentations in multiple popular formats (i.e., Baysor).
  • Selected the wrong gene panel when you started the Xenium Analyzer run? Simply fix the mistake by using relabel.
  • All pipelines produce the same output bundle as Xenium Onboard Analysis v1.6, so they are compatible with the same downstream visualization and analysis softwares (e.g., Xenium Explorer).
  • Backwards compatible with all previous Xenium Onboard Analysis versions.
Release Notes