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Previous Versions

Xenium Ranger 3.0.0 (Sep 4, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.9 GB
    md5sum: 10e28b33f0236a5e62d615dcd921a9b1
    curl -o xeniumranger-3.0.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.gz?Expires=1732268825&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=KRl2pP~ycq-JHNKG4YMsXjWbmtuzPlpxvI80hnAmeJ0STfUt7R7JD53zaaM8ZRQ5I2T648IauTpjqcuYZ55wt-CW1mZVbM455jClQmQQ~FDHOHAfMdkZTUizqDaZEqFHAwQUh1M7NcNg6Rs9WTigew-0Gma2Xmcpy9vVqXPdB5oejUTRngqjXEqKmnV1lu6JjAtmYlW7T6oWL~cp~ppjGJt3OjJb~TA81NMS42o32GUgKi6R7YLQ-44eloHhZfMKQgpgZhawxWmLUlKHzToI3iI5wiq794vvWszQh1vOP9bQE-6XiCLuGQ7O6DE0Dc6OgckgaDnRd4d0-LJEOqtX3Q__"

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    Download for Linux 64-bit (tar.xz)
    File size: 1.7 GB
    md5sum: c31be85a7e19edb8da484c295f3586cf
    curl -o xeniumranger-3.0.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.xz?Expires=1732268825&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=SD~AgKOin03OGxn5hrnmcZWAuXaP3N~-NzPS-Vdb~472nzD-biF7-Uom0l3ggVIxFCHrUQ3UGzPWq5jNKAwUMOs6~EcCXV7q-3KIEBojO4tJ500-2kM~7W5TEukPvjvq6859y~ncYKEB~WxjWG9xKTUfpC89FjEUKHlzIE-~6EZMBgYYmHPU~b7PdybyjTUAl1hzgO0j6geTCOXDEvBdIk45lJzYwzCPVAAMNLwytSzOJAIo1eQEJ4eWFke2y~FxisTTkzF57wV6k4T4zu8UdNHG91iYJLeNnop~084C9SQaEC~vZrfBF2vxAJ-AXgN9ot~TiAEwEbUL6OK3DQ5G7A__"

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Xenium Ranger 3.0.0 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Reanalyzed data gets updated scaled transcript view in Xenium Explorer and analysis summary features introduced in XOA v3.0.
  • New rename subcommand for editing the region and cassette names.
  • Robust to corner cases of importing transcript-assignment data with empty cells.
  • And more - see full release notes.
Release Notes

Xenium Ranger 2.0.1 (Jun 10, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.7 GB
    md5sum: 45d207dc432226dc003a31a287f5ec08
    curl -o xeniumranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.gz?Expires=1732268825&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=RWV4wg1cPkCVqEDbiNZ3HRmxU4kc5DAUL9sDwgNOPdBV4Zrs6KhOLO8GGHzSJW~rPm22kn30SsGCqoS6o8ceBTa0rI~~fOfrMqJhiRR4wUMlO3Pd-~Y9X~1ZXEyWGrjHx5TPhAdT2rGz2Xxju9yv4gWCHRFbgnTzzDgsjQwcp-ByMT-QHQv1Z~Wb-yJcpxVcoXQ1m5KrbtBe1oJOQYvTYyrAmh1T3RiFn6KiMibn7KwoWCz3GO4lL6IrONv5h7gqr~KnriJ~9uRVq5I816VrQUAz9mD5YsMhqLmbDD-GILZmot6xireK7bRCQTbMFX15anFFOBk6ikXKnk6~Do89wg__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.6 GB
    md5sum: 244bdbb3d159ff557a7747c03ec487a7
    curl -o xeniumranger-2.0.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.xz?Expires=1732268825&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=WIrXHwuM5tub37GSFGF4nJbBKkCozSYm3bAFQiN94bFybpCJhG3-VMBfrytQ3BELw1LI7HAbEGenJrN56k-I3FnXrcgY2NrEL-r6yjm0wDUF306XDo~isp3Hch8mm1riB0JiO3KoSWkFKln53thONDuGuxYpDHV1~Fq7kG9lCv0w~3KH4sw3d7o9I0uSROX0LvjwdBCV34myPdTDeZc~mxO9PVHm0m1YNAsV0VHPDZi4CNf6DyTmp~G2zxLqOUqanQHzs4rq5hy1uZHlQnZtBlPUyEcxVhksa0TttbZj6LYe6KfcMsKLKGig1YQYDDL6Ic1kfbDDEo3c91RX3KEEaA__"

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Xenium Ranger 2.0.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Default nuclear expansion distance is 5 µm.
  • Enables reanalysis with multimodal cell segmentation algorithm.
  • Interrupted runs can be resumed.
Release Notes

Xenium Ranger 1.7.1 (Jan 23, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: 51c373964e46c041e08ba73888657edd
    curl -o xeniumranger-1.7.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.gz?Expires=1732268825&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=DwNzT7GSX-A~J8LyGrfuUfsu8OXSFk~16HxEBRVW30aJ7F~BULIzQ2NZ8EExZnmwVYWhkdxnLAXrMSveoDPitNAhBl8fpsnBtyn2ouBEANvs4mxywm1yWyaFeOgCeWwAceACoxCIgVdWPjD3w~3Z1Q6gZlMi7cc63qCQVGF44vZdjYtR1Tdx-KZ1dyV9rHDsH5318WvckqQWFB6bt5q7EkAgR7Su1BUN7iNH3W6e91Ebzd-J5znyhq7bGYQU-kXpBpQJYIyObRyYc2x4b703YimCVAtZjab6xVUV~F~aQie52llK9rp6HdM5O-cml9bbk~PZQn37o~4WDZ5tz9ZpLA__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 43e6e4433303aae30973682dc5219f20
    curl -o xeniumranger-1.7.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.xz?Expires=1732268825&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=e6Ot6R4UgmNCDmK-4DWuo8UsaoBLkRts9YUGlEBiQsZRYUoE-m4--4fKKducsslu2SPkws1uQyNOX3m03r5k9QqaRA~oi4~xrHfxcEX0~UxlGFSTiuORMZrAA7ggpgBiCdA5zl5Q7ijnL--jQTOWZ7tV9YdgKKDiRCifrMXsoHXpDZ-9vI3KGArpzcZRAO7oRflE35lr-jen~pT8PKfSdUhgeVpUDlw-JGrPgoRKenYyog~4NNZ1dxcViN~CC3b4PKEizXtlE4XIV6aSLauyu0cgW46wJ1GiW1lKmPr5eRBdF1qDTOnX09d3VAktmt-NrWH4OTDCaizqFvtji81RGg__"

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Xenium Ranger 1.7.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to latest version.
  • Image-based import-segmentation now compatible with segmentation masks.
  • Improved memory usage in the import-segmentation pipeline.
Release Notes

Xenium Ranger 1.6.0 (Aug 17, 2023)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: ebd970ceafc057668b9e664df310a5fb
    curl -o xeniumranger-1.6.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.gz?Expires=1732268825&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=cDn5WAn6yI1z1m-M2NsldjSy5j9Plq3m-gZ6YI6k9o3HaOYwCjV~nSwCI176hSCnqdMxB90~sfW2H2WKATW8Za1sjGw1-Ex-h4fjfYDbD5rTAMg3KF2Uy8BCrwyYIAFnMtjk9JRQTRCh-7GeOEq7OgdZK~vaxYqnAknk38FRPANH2xhW2oz8qKepjSrcps38KwAtGLSzmMp3yNcgZU2Ylfb-m~sFscMHMv~G3VgexsjJoAccTUQf2uqP3Lb4x6ckNs8wk8VPst1tziMf6UekDOmovI7UJmA9zTelOGXDKxCJMRMQTY4Eacujg61UODMfvVyzCfTfKSZroYhnaf0oVQ__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 6fa799cfeef91264fdc174ad43b6da3f
    curl -o xeniumranger-1.6.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.xz?Expires=1732268825&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=I-37pIHN10FDq5lousWcWSHtHTQ3dS6uUI5xcdNwE6nPTfYBGYgWYapInvNyCJUcLlq~0oAmuu4DV0PJynAZQ3IQAPwzWpkRS5whj1ivGPaGSzhMxDshVgvpgLleV46AmjicbNpe~T9c0eyu8BR~cNBeawbs4BEaU3nYHFOvWSD0f9pWpb98Q8QHSYWYFetij2tVWSo7uwNteClXmno3Kgo8yZWGxC9SWkDBv6f62qa62~WGrFvXxzoHZB9bxgjCUr70OEdVYXkJfWxxLQXO3I9QMu7wBjaw-Q-IU5k3Hb58rSUMAldFose9Y0iPm~yhjpdL4ddFPdN75chA7p42oQ__"

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Xenium Ranger 1.6.0 highlights

  • Initial release of Xenium Ranger!
  • Resegment Xenium data with customizable nucleus expansion distance and the latest 10x cell segmentation algorithm.
  • Import community-developed nucleus and cell segmentations in multiple popular formats (i.e., Baysor).
  • Selected the wrong gene panel when you started the Xenium Analyzer run? Simply fix the mistake by using relabel.
  • All pipelines produce the same output bundle as Xenium Onboard Analysis v1.6, so they are compatible with the same downstream visualization and analysis softwares (e.g., Xenium Explorer).
  • Backwards compatible with all previous Xenium Onboard Analysis versions.
Release Notes