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Previous Versions

Xenium Ranger 3.0.0 (Sep 4, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.9 GB
    md5sum: 10e28b33f0236a5e62d615dcd921a9b1
    curl -o xeniumranger-3.0.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.gz?Expires=1753442386&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=HbRBlHW0WBe3o72L-tduDV-Phskt2tJznB3H5peUGF7u69xDLKLy9BE~fWxfAVZ96pFnMwNYTidQq2Gp4ttS-PXPowkZcn9Gek4eMMXeZL4ZbYzcQnWp0JYdlqycv64B2e1RJoYDNFYoLlthMR6p8V3Gb0CUu~YvkOvkJ7whL62ih5bweWx6KYEqZsb13lqMzqfDQDwd3ewFdmSqjDzg8PvC5DH~EKI0mUAKc6keqSiR4qgV2YcU8Z27UbNCc-gV-cGKoeRL~R03Rxk9bPyFJPsgbyHNzB9xiSb~AFVDQsL22PB45UND-0zCFJrqT3fhWbXyzYuMhyz64PkmvO2JFQ__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.7 GB
    md5sum: c31be85a7e19edb8da484c295f3586cf
    curl -o xeniumranger-3.0.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.xz?Expires=1753442386&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Wv9PMGeOKJZto-UYiUoI7dlJlkC1DLhZcbKxdrjvfAUMR-OS7RIRpqTuPV~Qy19APswRykeXZ20q9odX8TyQ9sCCH0sb75GHj71Q1DqhZUcb4zepCBenZR8wPu5viUFICx4fFPMrUGnQvWsClGO8B7j-bhe1UtKbXF8BdTJSSIEivlKoP8u09ukJweaifD7If~RoKFQ~UuiDaaDoZREYWiNsjgJWX7PC5Wy1efF289mTSSMowcAcwj3E2wUKQskIPACGpSXcRGDC1pZ6m-U8kXwa6Wm0eaD7sk7vhs0jSEDIDXqJrFTNpg2MTyJ6Lp5S8x54Q-gSXJLeFmmkdr7Wuw__"

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Xenium Ranger 3.0.0 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Reanalyzed data gets updated scaled transcript view in Xenium Explorer and analysis summary features introduced in XOA v3.0.
  • New rename subcommand for editing the region and cassette names.
  • Robust to corner cases of importing transcript-assignment data with empty cells.
  • And more - see full release notes.
Release Notes

Xenium Ranger 2.0.1 (Jun 10, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.7 GB
    md5sum: 45d207dc432226dc003a31a287f5ec08
    curl -o xeniumranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.gz?Expires=1753442386&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=hVf4-PLljO1IAVb08JCCfHvKcqKudTsbVisJdvP6gnPYMI~eUFLRyvknv8LiRrP2OcHrbVmMuAscjXpl8J0LoJZ4~rbHK9qJcbGAvukEw7z35mhJF7z1Ocb5-jQbPAizV82rp1zmxPmaWsH5fj6AG8UAG7MdL2AOLgpbGVwcgDKs~xQseA8YTTXfO8fg9yU4EU1hsUPyVYgqo8GXCxN2TtJgvruKuJVsoHT--0vo2yy~YvKN70e1yxAP1f-Ib~XD-BlA1-q6y44ffQLeK5z4ZiQu3LY69P0aaU3yVrJRY6f0-7s3YOKN-grx7fHMNG9C1IoigxdtaBIR~sDcwESHuA__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.6 GB
    md5sum: 244bdbb3d159ff557a7747c03ec487a7
    curl -o xeniumranger-2.0.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.xz?Expires=1753442386&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=SqMIqvmVJuAjiaCjxJnnET8dww7u9h8zASDtCOfPPBbZw~3NWx2kqPusINV19US8qhN~a7C2BkKgyUqabPe7y4RlUbp5fTFoFWlbnPiagjKzMf6anBLDey4CKW6kD~Rb-qOU7kWOiNmo9bTzjcOrVM4ijuLrgxBjaaAGEEC-Fomo3O6lCCudUbC~T2l2ZQD43~kw7WnuKp-1rZKGcGCXz5omaZgQEw3m0kkwiQSlR6pctzbGbFvr-rgK6pkHmVlq7WQ-jdO9ZLORmlNSfT3r6-0SxEAK9D68E~D3Yz51Tdl1Dvq~C9E1MmkdGbqkH2XlyvPQh-KRkjzKceTLz8QTaw__"

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Xenium Ranger 2.0.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Default nuclear expansion distance is 5 µm.
  • Enables reanalysis with multimodal cell segmentation algorithm.
  • Interrupted runs can be resumed.
Release Notes

Xenium Ranger 1.7.1 (Jan 23, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: 51c373964e46c041e08ba73888657edd
    curl -o xeniumranger-1.7.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.gz?Expires=1753442386&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=E6vEpCO6AGzceydwoPgwiWgXpjufqxN0rz3hJlYCY4isElmHvNR-Ewakm~NN9igXg6JwjkKSZuFVCFBjIZDwNdHpf3j0Dozlxhdp2R4YGsZpABOqCRyadCz-j5IMV4RJc5wShDJiH5A4D4jp-59Pfyl5kIj9NknGtarxwwKFcpg~Vr5ZEASBcIW7eUXAgtVLRxtYFir3OUFKe6gLPMxAWEx2TLBBsQ01yNPgbKcSpzQ8FzKMU2Tk9HcyeisJaWUBvTnyC9RNm4GRwqE4M6jsNeM2AKM44qj~lkMQ11Hbm-lHH0lG8vpGayyTyqYIxCFnSGmF8S4n1odWjwWcs81m9Q__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 43e6e4433303aae30973682dc5219f20
    curl -o xeniumranger-1.7.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.xz?Expires=1753442386&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=KrX~O~pzAOnIFEkwKbunDQ8RVrmhqpgLaZZFUb20V-u70GKdh~U~nTlcsIl3DmzTMB6Kzo4BZCZKMipRdyp4jjY5Nhdc9PgwZEI5b8alqpCRfMdHw8fIM0hyROysf6YFRv0NM-pMwNpelmYGigQK33paaJ-i~BE9CCaPFbAe5irdGCdf7xy~YuB9Ck~Ef96Iq3Ft-C~Bm9qiZao5p-WHHuNSOCSJbpCTMqjcKjYlL8ZcZa-X1TaqQPXBEGIG6Uw3brf19TisSnbWGoF8-~0-OF3SmdYwICkDK2oGtNs3MfqTkdNvYqC1BAzGjNkiEgApaOPKO0DFDYI3SGHj5zjXWQ__"

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Xenium Ranger 1.7.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to latest version.
  • Image-based import-segmentation now compatible with segmentation masks.
  • Improved memory usage in the import-segmentation pipeline.
Release Notes

Xenium Ranger 1.6.0 (Aug 17, 2023)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: ebd970ceafc057668b9e664df310a5fb
    curl -o xeniumranger-1.6.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.gz?Expires=1753442386&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=PdO70C86YHDBSrZ~JyqD40Vp4GGy4X-rSLvWyVwX5SLtE1KcJzAgmFXRxSoqmCSH1hSFCixv51PAJevgTfZKg4o9RUU~9wAg1SBQiyaYZjGDmL2tTysNdrr2vI2z8Y0nHDk~bLLMyDVeFTRCRqS3SNU3ik-kkQVF6~ZZHKed6VqailhRgwRKov0x042zR2Yl6DNqwU9jDXhhND47AY7g-cN-DHPtZBBv3KB3KN~jgK4YRZCzQTRkEtaFs3GMZSGd3FM0x2RXCep9dvIqNXORGHxWWM1dRMUliXMEkPY-IUlSpdEs9BRQ9LkVIdeYHfnsblm~nYvCSnWe-yr0QuOk~w__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 6fa799cfeef91264fdc174ad43b6da3f
    curl -o xeniumranger-1.6.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.xz?Expires=1753442386&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=l9UXuM~WJXswQQWfxp8eeY7DvD1rBqBPSEEmNZkp-4MswAk-92TtrAeYE9zHDNp9Y1gehqkGD8UrUJxDycQSahzcEb7wl~CGHsvmiOhORlQt5Hk4HckY3mxvicR1RCjblVXRzB33e~IlU3Q4EKMTxN-yAYwFtMyvuml715sEWGwtaqnL3rkPaWqaiDaOpuLGKtiTOx6a7Pi7WIYqVSlpXnKsx0wRtWZamH~726cu0g01zmXjRDxwYPuxP~XjBO5k0Q-rEeaT-ZrwjTJOxKyIRkQPXuIw9QqFuSeB4wiSTfPs8pvL3GjCKQDUmzi8FIt-IpT2uhoA7SFHDsZbmmEEJw__"

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Xenium Ranger 1.6.0 highlights

  • Initial release of Xenium Ranger!
  • Resegment Xenium data with customizable nucleus expansion distance and the latest 10x cell segmentation algorithm.
  • Import community-developed nucleus and cell segmentations in multiple popular formats (i.e., Baysor).
  • Selected the wrong gene panel when you started the Xenium Analyzer run? Simply fix the mistake by using relabel.
  • All pipelines produce the same output bundle as Xenium Onboard Analysis v1.6, so they are compatible with the same downstream visualization and analysis softwares (e.g., Xenium Explorer).
  • Backwards compatible with all previous Xenium Onboard Analysis versions.
Release Notes