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Previous Versions

Xenium Ranger 3.0.0 (Sep 4, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.9 GB
    md5sum: 10e28b33f0236a5e62d615dcd921a9b1
    curl -o xeniumranger-3.0.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.gz?Expires=1744419170&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=brZMjVENELrgQ8yLL1RmnIqUuQlsl67jiWf~BNy78DGMQPf05ZfeZGCCVDw1cM376sXk2gByWpCEQSOnMqww4Erg34dh34HzLscJGumMyQdpyr9856Jf3dGpnwfrRhBxnwS04wUDHSObI78sOVHOI1BcDVTLfbn9mJMKBj7fKwfoZmkcxMDrS1S7O7W~5Af6dbmShqTPiLYGUEcs8YrPU-36SQmUfzHCC7rw1GgvngKosyPBz-D9M-5-n4khroih6W697xBvhK0waEFRvXvf2EMRjCRGVXvbfZWu8TSC41I2v25giHze7idRh9VZ~vM4HgFt1gsoNPeYAHA30ixk5Q__"

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    Download for Linux 64-bit (tar.xz)
    File size: 1.7 GB
    md5sum: c31be85a7e19edb8da484c295f3586cf
    curl -o xeniumranger-3.0.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.xz?Expires=1744419170&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=iUx9x9IgUxPDYiAW25jwcM85o~vCJkCkn16s5DAX7wgThHYF3gtrZqO-7FGHJWf10~eUihyefT9JmPi8Ofl2nW1BNU4yoRgId6MRs7mAwi-Ss8oZtXtILJbC6Js1jgnpJW2IfyLqXY4rBhPw21wMz~inmzts5NG2pjpDAXOTA6D6S7hGjiOl0LNkkxYfdDO25efidhXFcugLXMT5LPo90SuMF2Rnm-AUrrOH2GjSWrS3bSGgx3iP9SN7vxtcC3iZZxlCyRFF--DCqywNFCRGgHAtsM9IBqCgrn6pa9FykC5iS7bnGjljZV0DNbutCpFyPaz8BOonhybQlVaVqEiC9Q__"

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Xenium Ranger 3.0.0 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Reanalyzed data gets updated scaled transcript view in Xenium Explorer and analysis summary features introduced in XOA v3.0.
  • New rename subcommand for editing the region and cassette names.
  • Robust to corner cases of importing transcript-assignment data with empty cells.
  • And more - see full release notes.
Release Notes

Xenium Ranger 2.0.1 (Jun 10, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.7 GB
    md5sum: 45d207dc432226dc003a31a287f5ec08
    curl -o xeniumranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.gz?Expires=1744419170&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Bn85~XtwsmiWpNKryLHC7o6AijmbFpI~v535w4L~ohd2jA~II459vwwdowzNpkselKUnH-udMhc-fzBT8qnPH5pUBxwY5NcPgWcrsFE97neZ3dNcmqM7~N77FxgTBEAzSd4JMoK5O6T4uchtQ0pHtSjTefayTfP6uK1EIqxs-T3KiRBa4Rw3lS7hA4bDmWFZlgvzvr1ykQYj1qhIalU1aAnYrvzpZuAneHT9Pqc5hX0en8fPiXJQodbJBCSCF5c9oKYVK6R-rPDeufGt7GsN6PKZ-u31LpdPVYyib6ZKE~ubYsZqQyTjeXfi4ARF19cV2sQU3YimOtNQ3bJSF9NIhQ__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.6 GB
    md5sum: 244bdbb3d159ff557a7747c03ec487a7
    curl -o xeniumranger-2.0.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.xz?Expires=1744419170&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=HDR4P44Un19a1QKElD74BujMPBvjULqZ8-1yZqqpHF1CcX-BDXz3PEgObq8jJE5PCC1CgU3P8g8iHL3iHGG01KieHw5xtgGvhSgWWNEXFQa6uwVh9m5vnSX32OIy-xRekObr2ZjbM8z6lUUY9e72eRw6UNFRlvWhvkj1jzmUrlpwl1bzf3q~N42Kg4zSuEghzmGr9t8FuItD0b6T0NFCkF3Dcig3JB~p3eUwhDqrsHGSI148I94jfC8FWKKGvmR-tJNA6r89wR61pR3618xLZXEIirANmoPYkp6HArWG8Ac3KFzLc~zPAaVbjfxNguYCdB9rLELqbuFc7N4k1ALFMw__"

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Xenium Ranger 2.0.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Default nuclear expansion distance is 5 µm.
  • Enables reanalysis with multimodal cell segmentation algorithm.
  • Interrupted runs can be resumed.
Release Notes

Xenium Ranger 1.7.1 (Jan 23, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: 51c373964e46c041e08ba73888657edd
    curl -o xeniumranger-1.7.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.gz?Expires=1744419170&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=VtIeO8V1aoVGaSGyspwHHP52Wxh7bY92jBFL8duyPIWDAVVdvAZnevURpx9fMyFnWtTsnRTWQh~hvuKCCNmF1Rz4fuHXooTzK6xUfulpuReW~Vxw4vtgkrf3YQaPyL29hNW0DoMUF-vY8suOznaJVzRcdx8y334wN37UvtsQ2uz6pRcC6kRkA288BMHuAce2C5TNHcmE3fzrHF5iOSQWF1qZjcW4nLoaQHE1mp2SKL7mFtsqcncTF12Bcvz0LpUuFGtfFCQ6kjjV2LJ4R8YgowdvBFTkXK6Nz9hK~Yyb2RRpAM9-gFHmyomMEyBXw8wwxCWC1z0Q5cX5nGFT68XSdQ__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 43e6e4433303aae30973682dc5219f20
    curl -o xeniumranger-1.7.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.xz?Expires=1744419170&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=KOwxhOynDH07MBBL4SJ2m5T3RSga11mUm2UhGhpHIAwB1DotWcYTdktw9Awob7WMP9INtQdLZBoE7KLAPqT03JPCGkz~niJfgPGt7B2Ar7DFU-rk-BqPPBVQvU5vzOfvejkCRqJxK7Z14l5sZE7x43jSiVIlo-fX6hy7o6w94l0TLwy0qrvvzoTLsVhUTxlAY-zD9vImVVj3814juqEDoyTHBqA1ZkGWrI7Xw8TbpyqfRPP6WamL~bJdacMlfgRPqU6EgJq~4a60gwAQGOQcdIzTog3zNuOotkQPJLKz8Hi7jefrEIBaCD427jSzbB8HjDLPNAJpeSnO4QktrUcAbQ__"

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Xenium Ranger 1.7.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to latest version.
  • Image-based import-segmentation now compatible with segmentation masks.
  • Improved memory usage in the import-segmentation pipeline.
Release Notes

Xenium Ranger 1.6.0 (Aug 17, 2023)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: ebd970ceafc057668b9e664df310a5fb
    curl -o xeniumranger-1.6.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.gz?Expires=1744419170&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=hsx9xxFaPzHrgD2-yD~RmD1J0w9he4gHJm4hI-W6fjL91DY1FphTQLsB7asV5oFK9z~Gz-iX-Ki9UhKM6FIBxv-XJNlgyctsYDrq7vCHNvvWzwSTUrZDAEbDjiQzSqYpjk2Pi2mQj7vny2AIGCt5lOtFf8sSG-yvH9uMirYBRV9G2bINhFP6lD3HpHEk2FCA1UuPFv7FkojsppTtbJT3GXgtOeyJjBMxYWvnZiuLw3fmfZixoVMqq28H-sDEBKg4YaIv7SvfxFfCz8dhgomHscYThDJuiArMrs1LeExu2eSueJMVRW1t8JGP2F7kkwgQNxUGwSN5KzTnB89p6FEMeA__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 6fa799cfeef91264fdc174ad43b6da3f
    curl -o xeniumranger-1.6.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.xz?Expires=1744419170&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=QGGYw0yzuWKFOy43LxnHuUqvp7CxYyDCzfHZxgacV5kTAZf7SwelIrXL98q-mn5Fw54ukWhMR8n4XRyERXsKFPbymYfAkxHRRMmEWCvdh2MowHfvq45VYeswKqu1LUv0489d20lGAaHMGl029ek2AdI4txlFHIecg9mOh-5cGGtQChFyQHxLG7JgpMIW473~P-3XsoJBQgNXtdG43DxD86O-Xa4elRQKIBU3EXLu2igOD4Lx7CsYdkQo1zGAAIZFG-xLtZkRoLxqq824qzNQnEtRs-aJ8vmE4KkP3NzLQO2MFYC5bJVnceRcHURw579Sp15EVP2I9UeQU-eJ-sTJxg__"

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Xenium Ranger 1.6.0 highlights

  • Initial release of Xenium Ranger!
  • Resegment Xenium data with customizable nucleus expansion distance and the latest 10x cell segmentation algorithm.
  • Import community-developed nucleus and cell segmentations in multiple popular formats (i.e., Baysor).
  • Selected the wrong gene panel when you started the Xenium Analyzer run? Simply fix the mistake by using relabel.
  • All pipelines produce the same output bundle as Xenium Onboard Analysis v1.6, so they are compatible with the same downstream visualization and analysis softwares (e.g., Xenium Explorer).
  • Backwards compatible with all previous Xenium Onboard Analysis versions.
Release Notes