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Previous Versions

Xenium Ranger 3.0.0 (Sep 4, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.9 GB
    md5sum: 10e28b33f0236a5e62d615dcd921a9b1
    curl -o xeniumranger-3.0.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.gz?Expires=1757873994&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=hBHI4j8riLA8smy3-9XvkkA~Zkg3g1c0iq3Vi~~I7-qIuhtr7eY7550d4Stz8UXcyeyvOyog94BnLHp-zRgsLZUlFP72d-qM-suvj5ncc2PUIzG7qWGr4wv-I-xbIiU7WXYMqzQySSNCns2Z7xGmPjYvXzbJlM5U5jHRAvjhu4GhZTZnTO9g-JSZhii1wKC0IFeI6P9QYaObsL15cD7B473wkorstOhtSLuRoYBpomXIsIUXPkIhA7LUV3OyYwchpZFMrxSnJ6uQfz9oyyKZ73Re5K37rjDiepTfd5xSoKnH1EFT2g~kTDOPMDKDOvMSskh5yTX~Mrdwu-iuIX1yWw__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.7 GB
    md5sum: c31be85a7e19edb8da484c295f3586cf
    curl -o xeniumranger-3.0.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.xz?Expires=1757873994&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=LNyBy63mZNrR7sgFiipNEsqke-fC-lXAEfz~f9df8dKOXuUkcIfDqGo5sdNPvqFIlO6yc6y7RywEHGO2-8Xz7yZgcdT3SgIoxGnF4vjblVBoVNpwAWXyKcKSG6k38T~vYeAPJkkGh2QkmkDvfi9qqbqLwFoRvPbO6XGvY-BBVns-PcIDK8W1hDYUkc6fOLQakM7Svv2jHgIlQDIo5u0XEXynwmxFwsUk~PMPfI9tu5~C81aY-lwWFkn0yTI3g9nPCkS572gdnhJjU0oRB-cX2JZ7WEayX-yJGGOGyrzbKGX0YD7gr3ibljeYQUxDh3wC3xwr4AnumqsVKW4qfScgKg__"

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Xenium Ranger 3.0.0 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Reanalyzed data gets updated scaled transcript view in Xenium Explorer and analysis summary features introduced in XOA v3.0.
  • New rename subcommand for editing the region and cassette names.
  • Robust to corner cases of importing transcript-assignment data with empty cells.
  • And more - see full release notes.
Release Notes

Xenium Ranger 2.0.1 (Jun 10, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.7 GB
    md5sum: 45d207dc432226dc003a31a287f5ec08
    curl -o xeniumranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.gz?Expires=1757873994&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=PJpwYYhMKfnAqsUnj9kqvYL8UnONH3-ZC6XmYhE-oAZTKHkF7UR78mbzE2i4Z3DsD28MdSngMS7mq8Z9PHt23DZNupELFHeaCMd-pAKf~NtD6Sa5KRYUwBPlqZlFY2p3tNhJYMoG3S2qLXNy0ZuQUQXop7TwADkmSafvT2GtIn8e4dQbcuo6ChQ9aNmnNgl6X7o5qul~AQYqzu7dpm3CcGBkE1I0FgXlHUHHzl564uRx-Uu4t3BH6dfaid8XwjM8zxZSvTibH2M7xLmfy7ZlOdW36wzIuktZGx3yV-acLa73ZHd0wrHlzFVNbtGyLEhqWOL0bWOz0Dj1IQCQGRv5XA__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.6 GB
    md5sum: 244bdbb3d159ff557a7747c03ec487a7
    curl -o xeniumranger-2.0.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.xz?Expires=1757873994&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=C~p9t39qOm7upYJIQ66vA~BY0Kj0XzSYrIFoPqnunKZEN2eF-A5qGWF7-c7T6qfNnxTiheNoXxHNLLh1WyylDXyzOTugaWlC6JydIV4RdgBOMM6WNZDXeFkmHj-TmF3cyRQah8lgSgvE9cgefPkP2QaqLsYtzrlJXSgD~h~RKvDSr2Wzy136odF9MwDRLLJ~Qgb0pkTPyL5xthAKYy6QNCJ0XGs3eC5FfGH9wlb6ouBhmB75RsMsNrdbHIDjVt3YfR-sS4~5MdwK~5hEKNcwsEoOJqZ2TGrCcoi61N9h7zbckC6JVfcxlGsnr8IsOUTlGbTqS~Qk5i8hzEhdfe9DUw__"

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Xenium Ranger 2.0.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Default nuclear expansion distance is 5 µm.
  • Enables reanalysis with multimodal cell segmentation algorithm.
  • Interrupted runs can be resumed.
Release Notes

Xenium Ranger 1.7.1 (Jan 23, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: 51c373964e46c041e08ba73888657edd
    curl -o xeniumranger-1.7.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.gz?Expires=1757873994&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Sh0o8EjwMbNMVrBPZ~NBP2r-HLOzp8JuUsf0w-TnpOqEFpoW17L1XKLvDk8Kl2z7KjS2Nd65oa3EyTUQ~LuN2UOdqNGvL46TmT-OUkX7wbW5yv95FAqlTCjMnpv4PcGfLD6rVxK6U9V8T1U0AONO4sbQp6gjfTKwap-7TIG-rYEG8HOWuejqbrFdcRJZ9SB-Y0LlSnS7Wg8DxRSkdLLcWHHn6r~35H79InBENgTmDwQwkDH2QyMQp14piptbkq45G0ukUdZ23p96A8GXrfReGd1XvHhaG8JhBOpYOHNzfaRsncXh4K038wpoiTPbYpAtxjqgNpsIXyxm3Ybh-uOHTA__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 43e6e4433303aae30973682dc5219f20
    curl -o xeniumranger-1.7.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.xz?Expires=1757873994&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=iIGM5ck6XCduSmW9lsygfzw~6Unqza-byp01YyXC~lcF6ssGT48TFHCr-e6945HCSrQDH7zpcunGXBiErEtgY78CrxBnxqr5bjs7uE2R8bTzj~pifsYGDCEng6wjRmEUOpV-NK~~AIw1hyiuYQJxPWn-ymxJLctyB-3IGZ5kmvX~t7qz7D--Azf1SSBPSHlnryvGG7IJWtcizR7Mcyyl~gzWzTxcQ2oRk49BcSG5tlKBKo5nK7NiotiPrSVTONmtbCqwmZ5~5ufgMedr-DDzksH6vnYVgP0LdBH1CN1gJe7~7TRyhvrQ7CW-B3aQrhQFzThFZ9zBHbi4gyZoeelIxg__"

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Xenium Ranger 1.7.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to latest version.
  • Image-based import-segmentation now compatible with segmentation masks.
  • Improved memory usage in the import-segmentation pipeline.
Release Notes

Xenium Ranger 1.6.0 (Aug 17, 2023)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: ebd970ceafc057668b9e664df310a5fb
    curl -o xeniumranger-1.6.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.gz?Expires=1757873994&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=kuC8gUO8ux5ituN9hdUErf5QajDmyZORRqsuGJVkfJjILVI1q7EIrtpXLWCHHq~Hqg01VAmIgSfURIDAYLZuRIw5svVJvv0-MjzVjrGaXlLfFoVgT2W8DFOk8qW5VLm9B8wItGfi90HAmu2m9slWVMFWa-eQkZj6XgxeNcetNouA0EPV15lTzrhKSsToR86~pn-WI2jdnQheDMBawQwlcfvCJF2SLu-b7Xs2DHJceboB-fiKvaKiNngb3FRkoB4Po0SbnYQde~10bM7k8CmV~EmI1Lmix9QwTSGygauDzYWEfAsuB7monRc51-HTDQ9EB~tIs-xeM1A2du5uU38o9Q__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 6fa799cfeef91264fdc174ad43b6da3f
    curl -o xeniumranger-1.6.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.xz?Expires=1757873994&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=W~VYevfEXPDYihMMAPxgrjl9Rh1LJgn~zQR3AjcdCa18UKo5~gloBpt0cxVZo5aISN4RQUO3qTMw47GvVUdbf2G1qxTfYabAuQOejq4JTOhKYK1hE70h9EdPBKqKi9TEKqrsjBAE6xiC5KlvHbb951Sa7ZoTwFf9Kpc-DSbvMFzqF1ylo6T0cm63SviT9W42hzl9IiLT4CBbFhO5nFL7yDFR-c7OgT6TXjYtctnU~QracxdO6Bi13b~j-sR7OulZLKisKbCAP3FNw5xP4NjDrNAQHlV6ObKIOVcOR9l8fisxv9GXe46LAy6ByolS90esHJH6BySDZxx3RHk1sgrWxQ__"

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Xenium Ranger 1.6.0 highlights

  • Initial release of Xenium Ranger!
  • Resegment Xenium data with customizable nucleus expansion distance and the latest 10x cell segmentation algorithm.
  • Import community-developed nucleus and cell segmentations in multiple popular formats (i.e., Baysor).
  • Selected the wrong gene panel when you started the Xenium Analyzer run? Simply fix the mistake by using relabel.
  • All pipelines produce the same output bundle as Xenium Onboard Analysis v1.6, so they are compatible with the same downstream visualization and analysis softwares (e.g., Xenium Explorer).
  • Backwards compatible with all previous Xenium Onboard Analysis versions.
Release Notes