Previous Versions
Xenium Ranger 3.0.0 (Sep 4, 2024)
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Download for Linux 64-bit (tar.gz)File size: 2.9 GBmd5sum: 10e28b33f0236a5e62d615dcd921a9b1curlwgetcurl -o xeniumranger-3.0.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.gz?Expires=1753580616&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=ZuTN3EyRJacW7GvU-2o~GcD8lIYfg~~bc~TUQRA2Ed2ztB4brZuuaNpyCKdOeISZmEU98B~qhm~7qkoG21dz1wQis5QfpaVe7iFDjtKzc8puH-aq4BWq3CnpBYnYIfVKzOsknvGuIzseVQz1QFR-J5J4PZ6B8TXrmY5bv7kf-l12NW3cJ9SZQaJ8uL6osW3ZY2GvCXFhxxds7KuKkwd9rTFI-bQLVDlx2CFNrdP941AJZGdb-LtvJdjZiUaFJ4tJ-uxlwlLLG~Pe2mtyVgTQAZbQOBy4JgPBSbav5ocylNyK5RLSb~tgCgVxndbWpH1Tdl-vgwlQpM07D2eV~6xunw__"
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Download for Linux 64-bit (tar.xz)File size: 1.7 GBmd5sum: c31be85a7e19edb8da484c295f3586cfcurlwgetcurl -o xeniumranger-3.0.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.xz?Expires=1753580616&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=lzwArtWuBkXPwZAhJYrpRea5qVqYllchf2yRV2-JqBc9OGn6jpM8ZFzUlH6R0IXV9WF7FlCSkMxhijj3MHH-z7E2WILY1WpRz0~EzA54MOUo3F4MBf40xVe-XdaQNidoGaFg0~d~R-vbAzQmfiibfFMtTQADDgqkXNoFBsi-LzI7opm1YKmar4KOtZIJ05rGGYzxHrVTUxb3aVb~UwfTyZKNfJPKBh-B8OLNk0sl0Z-mMWxrqcbJVDPTHj2tAlorznyrbZxAsokDRLqMSAwhiZWqFq5712sAdCmleNiH2a61TTZUGOkrXQih-wvPh4ECpVeQ77Goayg8JX2A778tCQ__"
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Xenium Ranger 3.0.0 highlights
- Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
- Reanalyzed data gets updated scaled transcript view in Xenium Explorer and analysis summary features introduced in XOA v3.0.
- New rename subcommand for editing the region and cassette names.
- Robust to corner cases of importing transcript-assignment data with empty cells.
- And more - see full release notes.
Xenium Ranger 2.0.1 (Jun 10, 2024)
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Download for Linux 64-bit (tar.gz)File size: 2.7 GBmd5sum: 45d207dc432226dc003a31a287f5ec08curlwgetcurl -o xeniumranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.gz?Expires=1753580616&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=n-nqXRPfrhVseJmGwL-f-nbXsU2Y33solXlA1gtpGFRQqjOnFaM3oy0OqiW-mBgerV7QRkax1mgdd2kB9Jzg2cZqPRyiNKNwvlEEFYTbTSdrbKq8v~iUChlWU5VdU8ltD43o1W9YLb1qWWveXD1s6AgbAqUvHIIitSRZ-z2AC9tbtfj6NPi8u30GKicvs4ovbgUvG2TSOlaW4QNZEnlMtgvKX584IQpm1Wnl2OU8z~lQVOO8jFe-02Mvl2MiqGTVauhL7jdJllB1CUBmXLJjQBoo2RyitbyA7FNiOAmDQ3LmIooJlQT-Q5owoDXTCHx~Fabvp9GdJiVrztoJeJvlqQ__"
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Download for Linux 64-bit (tar.xz)File size: 1.6 GBmd5sum: 244bdbb3d159ff557a7747c03ec487a7curlwgetcurl -o xeniumranger-2.0.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.xz?Expires=1753580616&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=hfjJSjyDw5jmW8~nQQa-20ZlRpASmS7tKs4i9yT62VApBtEOqfdlMtmJ4IpFe2p0nFFJOYoWZ97MtBATwWCEZSsuiIxTuCGg~Zec57IDe7BnA20WDWA~MFT4jIn1Rr55oWvVBWAaSOpebAVVrehro-L-eM06Zls6LYw~heDIm3gzNZsE4ZgwsEm5o4oVEyBMAuFVlUGWtu7noBO7oQ4mWwSUVr1OOlS8Rq5BeFYXOWlKMsskFPQDRUBZ4~mnLLqbI9DlafKB4EmAA6KXkcS1Me1uAj1WJTRknTtEFPIcNiwfe7nR1lQzXgldftLzkieZwhpKTSCDW2GKUTXafepldg__"
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Xenium Ranger 2.0.1 highlights
- Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
- Default nuclear expansion distance is 5 µm.
- Enables reanalysis with multimodal cell segmentation algorithm.
- Interrupted runs can be resumed.
Xenium Ranger 1.7.1 (Jan 23, 2024)
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Download for Linux 64-bit (tar.gz)File size: 2.58 GBmd5sum: 51c373964e46c041e08ba73888657eddcurlwgetcurl -o xeniumranger-1.7.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.gz?Expires=1753580616&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Wl6EDTNs-GkvMbm3KJz9pQRhd6gRFxDxGgj60XtNQeAHcgyb5JHS3C5ehStZBIwDWNOK0nmJhQ3FYzDTzSKryIJDXl6PkWvu9baMVXSMQDU3rqI~dE1r9YVEToDrw2vUJwMHKQt9rL4a-UasG~5tXaiCdBY3dXX0-RIDUgBVrSNkj~Gvx8z1mwlapi6GCv4DR9Ofn10IbPIzEpXu9e2rN~wRcAyJmweY-R95vo3fSp01-kENUn5YmJy~i~IStqqyAR~rWzd6jl3-GCz7Rw2uUsL8wZqhuiI3D9n-74SzgATt1fMI2OBHd9ZDJ76yO7nyf3gtqBM6cTRqMBT6fJus9w__"
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Download for Linux 64-bit (tar.xz)File size: 1.56 GBmd5sum: 43e6e4433303aae30973682dc5219f20curlwgetcurl -o xeniumranger-1.7.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.xz?Expires=1753580616&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=dxQsUq1ylYq4tPBvFIi5Fkasf0tk~ml7kmjUF0ViNHhP0nlqYO9Q2CfxURrl2IGlf6~D9ZKIxoPo14IOkfZfgHqoyp5sJZdaCcSf1NUL8OTPNNTB2Lgk4yAOohPQ-MWIoV-H0zGlERmBo6VdcTeVjfpJpFaVGB8j9rp47wZmp5Dk~MElswvlnh-ZIy9kfOeXV7cpP7YmQdLhb9ORCb35hStWAEyoYn1MK~PUsepHTGnP16PTv5Tq6GObQFJHcDJNcZX70s3ml59YYsd6DuMDJs8k7bcBQcdanGLtgVI3QMzb~P0UesIt45iHiNq2rU5d8EnKg0U7md3WA7jSQocnAA__"
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Xenium Ranger 1.7.1 highlights
- Supports reanalysis of Xenium Onboard Analysis data up to latest version.
- Image-based import-segmentation now compatible with segmentation masks.
- Improved memory usage in the import-segmentation pipeline.
Xenium Ranger 1.6.0 (Aug 17, 2023)
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Download for Linux 64-bit (tar.gz)File size: 2.58 GBmd5sum: ebd970ceafc057668b9e664df310a5fbcurlwgetcurl -o xeniumranger-1.6.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.gz?Expires=1753580616&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=n2FHJlULXXwGsfch09l~ZffmGDDcDlbvC5jSeZ2HaSeQLf0jCkmXOE1kss8ZlMDX7w9ifcwuXPZ5zU3r-FNcLM7sooOBNNljnhtswdDPVqVpWnV6DOzpr8CG3YbvxmCQCflOIMZEagJXXzf-7tadTody9K-oA6gVj2dMgPjgVcTCExoG~6L1ToXf3geIs371w6dpHS2OYDIEosfJBpqBFKSPcPWWoYBRqA59TmmzTo0nAxjrHOHL1-laZSRVByw7RUDJhwi9yM1FKAxw-U3JF420UZoPAEJnukftPBeyCy7kJ~r5MOUg3JCEAIc4yrrLpn5u~RQqfxeKAcH8EmVLFw__"
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Download for Linux 64-bit (tar.xz)File size: 1.56 GBmd5sum: 6fa799cfeef91264fdc174ad43b6da3fcurlwgetcurl -o xeniumranger-1.6.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.xz?Expires=1753580616&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=l2g0ObpLgxtRSnbtTunetiumvvZZSdNunLlA80T2ikJ1j6wDKVGelj0kFkQbCbbXJTC8k-kQZSQo~dnIFO9AUVyoutBlXkYjQzg3zPfB~8cKSDBu5An5VrilL4vOHqzXP2OZQPFEkIsuKxOWC1osaZU0z8ZIdATx18YRtA1BGqyXFvr~Z1MYvtOdkvlSznjq9AQKRbiZfBVQ5UZFSQc6EsJbwBbVZn-XJxMR8Oq8y0wXsldrdMhWFk~QGIaLy981Iwe~MDPtTQ~Z6ZxOGZGjpktFFG72mhuHUG1GArG3aDEmpHMP7Rf3ybqlcYPFVYDltI4XgBo7EemSvzZZXwaF9g__"
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Xenium Ranger 1.6.0 highlights
- Initial release of Xenium Ranger!
- Resegment Xenium data with customizable nucleus expansion distance and the latest 10x cell segmentation algorithm.
- Import community-developed nucleus and cell segmentations in multiple popular formats (i.e., Baysor).
- Selected the wrong gene panel when you started the Xenium Analyzer run? Simply fix the mistake by using relabel.
- All pipelines produce the same output bundle as Xenium Onboard Analysis v1.6, so they are compatible with the same downstream visualization and analysis softwares (e.g., Xenium Explorer).
- Backwards compatible with all previous Xenium Onboard Analysis versions.