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Previous Versions

Xenium Ranger 3.0.0 (Sep 4, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.9 GB
    md5sum: 10e28b33f0236a5e62d615dcd921a9b1
    curl -o xeniumranger-3.0.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.gz?Expires=1765395088&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=d6gZvBGslb5jkWVMPHHTa1bQ4RAAh6VYeGO~W9qZ3wshuE48QUfeFonFMjn3jo9iZ7pR7QMZef-T6jeRcAij4AWM71Ql~6Z4AJY2LVtDMlG1-ruK9BbVsPco8bS7heiL5S2cDXlw8AVs9jT6k-ldKdc-HI83y~-XveipddY4C1a3KPNaj~mEy-Wc4MGxDIvmzzS2OhUrU-Ykd-Ri8wdvQpyPHNxfL3XvZB-bS6z~FHe09FYDAWQimPH-h0MHsxRuAu9b5IVW-dDx~4~RJD5sPugAbHS5XaA9u4GfSBF9v17hLwcx6~nNLomYTrWFlSSOrUf6u5tGG3G48-u8t7H3xA__"

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    Download for Linux 64-bit (tar.xz)
    File size: 1.7 GB
    md5sum: c31be85a7e19edb8da484c295f3586cf
    curl -o xeniumranger-3.0.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.xz?Expires=1765395088&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=EJ~6VivmUq0XuGQrFzRk1pJoY4iuc2Jp-fgBQltklJ39ikN70ATpjdcn-YDASzC~mCADYBPCYZcb6QsqEnsfxayg4d7T95Up8JYHZS5Pr5oMo~5n3y2u0DkwoLHZFsw~GalIKFVpVg38oezQkAF4ExTNFuiva47UN45VuUL0QzuO2kciVOll0MMtYKtkDanCGPJHGRVf4StlBBQ8E9n0rgxl6Rrqk7RTeCwnVUpw9f4lFCh3K773UiDYnK~UbDDZWY9GEWijZjigF1RhaFaFFW8z852n6Wpzxmcr-zHi6mhXEQun-PyHj5KMX-CVUD3mJsjunpsR8pK3Ex1cnS0yAg__"

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Xenium Ranger 3.0.0 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Reanalyzed data gets updated scaled transcript view in Xenium Explorer and analysis summary features introduced in XOA v3.0.
  • New rename subcommand for editing the region and cassette names.
  • Robust to corner cases of importing transcript-assignment data with empty cells.
  • And more - see full release notes.
Release Notes

Xenium Ranger 2.0.1 (Jun 10, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.7 GB
    md5sum: 45d207dc432226dc003a31a287f5ec08
    curl -o xeniumranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.gz?Expires=1765395088&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=gyU7sA7ugy6aWtbAB9wOKBVS7ViaZOf0vXYJ0ONMXhE~hhFirjWeDgDzPyb-2gbhR1ZV2ix2eTkrB4DbTmAY37cKJd09J-33Jc1-wDbP5rReGy59DWFqscxstmP6uWXP5onxN4nLeIOtLt3Aq-sXqZITzAGIbcNmXvgM7w4U424W6tSpLmPQCxf2TbAAWFzfPgfpyKX5XRR0ov5AuzxGRQBwdRz7hnJiaXPLRKQ-XIJ4uBzfQQZP~9TLTs9EPbV3KwaLlqToYWH48xIEreqZrSol2HcWJSY8tQrR2og2ireOZf7Ep2XpFsOVwCb0BXk4Q92Z3U86U5ptmDKTZQZTPQ__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.6 GB
    md5sum: 244bdbb3d159ff557a7747c03ec487a7
    curl -o xeniumranger-2.0.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.xz?Expires=1765395088&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=GT6cHpXKEby0HM5FZUBDZ7I1ZsLUX5caVQx5myra3d9PtRxwjZRX7f~gBX4ZSglbhU4cwG1sMGvd0WlO1BFZvOig32332mGXAIV6GY7ekFNR~6E~~PfK8L73Y-Ouv~ltGT~Snf0qpLxdt3BYdPByrLZStNPSahLE3bfHQX55gumuqaHXOezUuxoS1B2ObtXu6GmbGPKMZmtQmpvBI0UZE4gI2~y8s3UgRXY2IiaY4l5QrrlLXVJ~vcrvy~Ej3MY8Pxec4dsxdiZZdVthCuqVHrPx9ZYFipCjK4VLuTOI0kQtD2DPGyeMYj2s8hNxoC4uZM3IhRvwp-BSwF7Es~3-bQ__"

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Xenium Ranger 2.0.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Default nuclear expansion distance is 5 µm.
  • Enables reanalysis with multimodal cell segmentation algorithm.
  • Interrupted runs can be resumed.
Release Notes

Xenium Ranger 1.7.1 (Jan 23, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: 51c373964e46c041e08ba73888657edd
    curl -o xeniumranger-1.7.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.gz?Expires=1765395088&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=AeOL8gTQEhNUggshY~fWPwTMYDCJ~5U8nD8Vci44PYv5Se4sEIubuVNebwQ9XQdFhiEn9d2Mrxyk7YEoczWUe8hFop3md3RqMyrk5jOU3rlHDw4zmhFkEz8I5LGAaPFdfSxmgNoC9abpMznevWUPi9D-dI37VFy8Se18bdCHInReMYDI8hbSt3hKvncvxd5Xgmd9pabvTO8AFUSx9puVTgGQMDANOHX2v-pSYQF1GPlc8cggowf76SqxYSRcEjIdgat46W2eR-pUtg2iHCXqSi6Ibip7L8dzhs-8CJzFYe0R705ns1vQ66he0Qn4SoV8fApUCu8EcbGuqS8008hQfA__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 43e6e4433303aae30973682dc5219f20
    curl -o xeniumranger-1.7.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.xz?Expires=1765395088&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=FsffFZNYfjPwUGQRKcKLbpjQSy8i4rFJWJp-VYSsAUEdXDkLKNBJ9Z9eRqaPm6coQa9F9oCMNF4-VKLb6GeARoS2rDId7PUdGxTkYWXsDzL8Q~w4NVJOZk15GzSwY2u4COQLuS77l~oxWFAEKvtvRMftz28XKZiAhhdyuB0VyiOTUQNxXojcIYOoJY0KCutMMddrsQFSabBJu7t2gepmvBzzD4lWVSd4HCVUrt4V3WW-u31SNciKbLDxmSo5tn4Ny7Yg0ayOJ6Ia4GsuE9qh7C7wmuf5b23k5bOA7Vk-K78kJfl6C3nKNnRnpYtBT5pEBCCSQrjyK1fOeYpgapxEWw__"

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Xenium Ranger 1.7.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to latest version.
  • Image-based import-segmentation now compatible with segmentation masks.
  • Improved memory usage in the import-segmentation pipeline.
Release Notes

Xenium Ranger 1.6.0 (Aug 17, 2023)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: ebd970ceafc057668b9e664df310a5fb
    curl -o xeniumranger-1.6.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.gz?Expires=1765395088&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=dngVlHHk20NdusUQFJDDG6DCmpa~P78clme~B1~Dxs1KLIyo5UraPwsMEThkJy0ifB438MBX74vyldhhc2wzIFWbp2Th6HE3fojL05ygBHFV2P63Z0Dn1YgEGEchGZUiV3jh-nzPc-5S-IjaLWYJ0mhGV5ofjHYdkUMikiPar8KS4T0AT3IZk8BwVQF8k6V~dc4H18AcarOoZJGnF1ylNLPGQxpDhXF52ZsyLGRu~QBirksrYa3mFKugJ2q7IR7N4IVZozoEc2lrUnHEi3dI0wbbl97FFevmFblOzKQ9pkLCGnsqa0o263SqSrfpf5xvzOMkmAR2OZBtTD0YU0hNCA__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 6fa799cfeef91264fdc174ad43b6da3f
    curl -o xeniumranger-1.6.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.xz?Expires=1765395088&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=ba7NUCcJxhPO7rpNFEhj8nVPQenuEAOOF7EUaRiGxQdkjlR7U3sjfh9Xs2CgdKmH8W23Bj-b6HJkIrP75gcR7zvt~sqUci~jmTvxDT~NSsCpq~za16OGVHklQu5qPum0ChWu9n-TsmQiFmBHr9UaSZdB6b3F6XCDdXNhBQPRGLBIRh6Xtw9GLo7IIWuqRbCpbUOZH4TfpYP0ijkWjgd3f0GWwgk-wl2h9bpRtmRKUwzpuWUJWXM4pgh03blA2Ul4uguNTnDK57ETp0NKkdcaZ3RbXYwlyLtALjZCRsXCHtbU0rY5PplKBbckPrvMoyL7OXj8-Xmy9VbSLyPvqCw2TA__"

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Xenium Ranger 1.6.0 highlights

  • Initial release of Xenium Ranger!
  • Resegment Xenium data with customizable nucleus expansion distance and the latest 10x cell segmentation algorithm.
  • Import community-developed nucleus and cell segmentations in multiple popular formats (i.e., Baysor).
  • Selected the wrong gene panel when you started the Xenium Analyzer run? Simply fix the mistake by using relabel.
  • All pipelines produce the same output bundle as Xenium Onboard Analysis v1.6, so they are compatible with the same downstream visualization and analysis softwares (e.g., Xenium Explorer).
  • Backwards compatible with all previous Xenium Onboard Analysis versions.
Release Notes