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Previous Versions

Xenium Ranger 3.0.0 (Sep 4, 2024)

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    Download for Linux 64-bit (tar.gz)
    File size: 2.9 GB
    md5sum: 10e28b33f0236a5e62d615dcd921a9b1
    curl -o xeniumranger-3.0.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.gz?Expires=1746625944&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=OXBEq9V8GNs1a~fxSV8-cY713KDIfW1xjJiq08eAb-pOkJJobc37B0Act0PvT-0FMk-FhN0qbWFZsmDF3QSJ7~c97sGt7WFUCtmUSWH3xyPDXFQ1CdU8u9EjEvzUDP4lWAxAAGEan4LBa5jdEbrN~TVLSaMJUJ~lFNE87r7PQjIjWRIbT4A0Dx~yCu5f9PfJ68xOzH8zgYMnO5xkyFdBBgFcJ1pJU537DL0VNth6E5Mei3TdKpJ9Z2TCZq1PyTm-HS2cuUozJirsf8EzUxOb3CDSzhzFk4JMqiXEHxZ3bOelW5Y5BtLsmotuH3EswP3G2IthLibtCs5nCI4O9cIsqw__"

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    Download for Linux 64-bit (tar.xz)
    File size: 1.7 GB
    md5sum: c31be85a7e19edb8da484c295f3586cf
    curl -o xeniumranger-3.0.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.xz?Expires=1746625944&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=ainYbqJ2IB5cLsZgcNCDmh40K8Mf84pFUQ6NZV~cib3EMMvaZHmZotzPnI6kpxgSN6qK8oiEIUAO4-zAbqwKS5Mul6pa3sZGZBF8y-qS2vnf-PIMaEqUwoGuRTCIB~2pHD7HTvfN9E0LnqbG~rMcH4mKTcfazGgI6yShRbGz-qAcAQfVcH1UfKoU3FgwXp5lYHBOKVs9fTAqaOqQMlZfB1vB6Rn~NsB0oH3kFHxG9fSB8aaSeCjTqPeBjBDjIzCSjwrpxdXqt~V58x4VcLbKVzJYQ9b~fUr8NIsIsJqQSWEXHCj0IK7eRK3JZmuJwgvX6GlQ5lsEy601XUzFInGTJQ__"

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Xenium Ranger 3.0.0 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Reanalyzed data gets updated scaled transcript view in Xenium Explorer and analysis summary features introduced in XOA v3.0.
  • New rename subcommand for editing the region and cassette names.
  • Robust to corner cases of importing transcript-assignment data with empty cells.
  • And more - see full release notes.
Release Notes

Xenium Ranger 2.0.1 (Jun 10, 2024)

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    Download for Linux 64-bit (tar.gz)
    File size: 2.7 GB
    md5sum: 45d207dc432226dc003a31a287f5ec08
    curl -o xeniumranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.gz?Expires=1746625944&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=eWs7likofnaY7a-ePT6aF~Pf4-UVvdpLJv86ey9mYPs174ZvS-4DKO49JawmU8~dv7E2BBsEKJW~YawIik1Nwqoy2bMzxpN34Tcpmws1QCrqH79y0ptKf2VdpZXc~KSVZNrT~aHXGHrEa-gCJcRxVkLtdVQEH-iAviG5tW5LZ-y~7aEIyIthkuOmzDn~EQ~CTc7Q~UpC3p5TCAzVr-wEg4N7-uTvL2ktWClKbDhBKjm9L~Q4Lzf1RQZADdL1Z7zCWwgLFFgu3liJ2LVYogMKWoaxuvXjelwMICzw8Sh0MdUWas14Z0dWJJ5fIVkQrPZQzEs9rYKFRtOvPgRfNAeB8w__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.6 GB
    md5sum: 244bdbb3d159ff557a7747c03ec487a7
    curl -o xeniumranger-2.0.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.xz?Expires=1746625944&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=cnT1Dws1eIYWHsJ2DoCPqLy2tcg8nh9JP8WlM5zSzJufRpN8nZaITJ0bAkMQgJX3m~zhJcV-0oucUUvHMuHBfNCXbns95fISL-~7nMVSLqcQ4NXJ31yk9W-8QIwNMCL52w~9gUOucwYlRGpTt-ufUsTM5rFsmRu~29fkbyM6rLvgm60h3vSfLhoBMjpOF8XmNMkXZYDlF4jivEZfUJA-dzCmBfahZYUTP4IcptX8F-KObzbhg8fY8aW58Vqu8xNB1XR7CdR1Y77LVC~tepFWur0g9Hr3sHK4FJ9TpCMo-URuRQvoRB2yvGiqGemC2S5AH50Jd596gH5wQMuRupr97w__"

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Xenium Ranger 2.0.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Default nuclear expansion distance is 5 µm.
  • Enables reanalysis with multimodal cell segmentation algorithm.
  • Interrupted runs can be resumed.
Release Notes

Xenium Ranger 1.7.1 (Jan 23, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: 51c373964e46c041e08ba73888657edd
    curl -o xeniumranger-1.7.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.gz?Expires=1746625944&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=g9vDsN0w4IYQIGThKLAK4q2RZBgCIISBilxH0H3Ngcpt~ncwP~5DymqxW9TZshTEdg1zWPatl~oDTIZyhO6KhLlxp1cjDU-2R3cMv3Hert-bmK0Re43ehuPUTcJ8OQv~LNDf9MdBYCXi~R5ZRQxK8T65gACPn3hiTXfLVUlaDu7TTYUE~SGE83LpoAvBMILAV2O3celEw0Y3HdE03huYJcJ5N7OiK8Zm6zh5fNKtAXeBK-amqXPWXTVB4R69rLOB~DaZQ9RHrRkSVtr4AXMw1TNTuSTDIbyvaIuUsLA4RwpRqyY7ft4L0d8pyEIZJWMzu0naNVJTblMIW9E~-szQwQ__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 43e6e4433303aae30973682dc5219f20
    curl -o xeniumranger-1.7.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.xz?Expires=1746625944&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=VtJxmPQh~7eR7pMIVix6CGQOrH9NMw90BEbUeevpZSr1vBy8PYLQQaoBuM5SzpSUmPl8o7B24NplNGLywllp7y7GZHN3yCuXvm0aemyfyuz3hD1FE2Bmw6tF~-YphMYfHFATNk-lUXLUKZ9BZSOlIefWkY0vxW56cpF10V5n6rlAGBtr01xzCcU5WsIukC41IAcFGZap84QTVs5CLn8Uw2EQ6Leu8DjPQEPgoG4tXgjZaYLg7YOKVpvLv3qSnNmyLoTut8ka56BBtMg9LUZVum9SqlH98lUKC4sPcp~XqIKGihaD-5kF5Cz40sB4xwTb0OJHzbhfH2pubJ4T8jL0~Q__"

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Xenium Ranger 1.7.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to latest version.
  • Image-based import-segmentation now compatible with segmentation masks.
  • Improved memory usage in the import-segmentation pipeline.
Release Notes

Xenium Ranger 1.6.0 (Aug 17, 2023)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: ebd970ceafc057668b9e664df310a5fb
    curl -o xeniumranger-1.6.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.gz?Expires=1746625944&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=PpR-MOI27IA2JlHyeL-wrlICwsKzjSZt4EHSbyBRFdiS5PIfn5vI0NpY6TP0Eb2HTYDNoy3N~a-TSKgyxBvu775Mxs8PLQDJJIWzFnX9~frSo64CDe93Ixly6j08Pd7u11gbMPhgXIs1fWzPOwuHw6sihsJaO5uESO4Lh3IuEaui0B5TGzZrraISlsGO96D938XvztDTKbiB4Ggg323pNvl9nhULKP4WLyl5h0ehnEg26CHI6XgYSzDoDuyoXDmlvaOFBANZKH1OoMOQ-QDwW5zekvgocGThi76JXOvJOMwEuioqODBJgy3xJXHAiPue1O-OdU21f3~9cEJn6zlrvg__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 6fa799cfeef91264fdc174ad43b6da3f
    curl -o xeniumranger-1.6.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.xz?Expires=1746625944&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=bA-PWVnDR2BlvTb3uvLmX-HURr-gcEBVaLdvZND7VRM6HgDv51AvzGnjqYBgCDZ8IhsQDkhJQyOAk37lX3TvYwZU34BJl5gU~iizNZIf1DQrRiZTYBA3zn5f2PzK7mTr8ts1StCFxkRbKFcNf8pyRivJFCLtiA--QBG3VcitN1QEsm3X2dHZJMEvrqI6inAYGQJaSMgYj6pJXskJN9rDoG9ScxnzOnY95uTPVtbbZPM6stqZi5SJplSg4CplSnCmGllNPrRR3OEhsu~DLXXh2jcSifxDxsXkEK8EojyIsYzPjVOq7vFX6C5iy~~W6gOMs7sGkX2ok4lfSFhQkG0keg__"

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Xenium Ranger 1.6.0 highlights

  • Initial release of Xenium Ranger!
  • Resegment Xenium data with customizable nucleus expansion distance and the latest 10x cell segmentation algorithm.
  • Import community-developed nucleus and cell segmentations in multiple popular formats (i.e., Baysor).
  • Selected the wrong gene panel when you started the Xenium Analyzer run? Simply fix the mistake by using relabel.
  • All pipelines produce the same output bundle as Xenium Onboard Analysis v1.6, so they are compatible with the same downstream visualization and analysis softwares (e.g., Xenium Explorer).
  • Backwards compatible with all previous Xenium Onboard Analysis versions.
Release Notes