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Previous Versions

Xenium Ranger 3.0.0 (Sep 4, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.9 GB
    md5sum: 10e28b33f0236a5e62d615dcd921a9b1
    curl -o xeniumranger-3.0.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.gz?Expires=1737238483&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=FXe2DlL6CsiGku2a6TfcH2q~yCJCyFAQvuDPQgJypLuxTgFhuJXMXkPsThXwJDazrSDYhlxEF8RpfY7NHfbxifoVZCoK5bkWq6nQLry~es4iVNnErmSRugSpsNxMrw8T0berVjYYjqrOMLPfqOQheHTFJjGBgwQjttMG8cykEYdXgR7xWtAp2fUZSCiooLK2xXbgMq7epdt15l4zRMIKgbEZLy2MbinX8lEyZPbZu4EzZQWSSRGORV~g1kpnpNov2ksDJck2Kpy73yeYiBCuB~ScZkl06jhlxpo~zk62uvLD9-zUepYdj6OyOPdS3z1jBSmG64m0J~X1qBONIy7cVQ__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.7 GB
    md5sum: c31be85a7e19edb8da484c295f3586cf
    curl -o xeniumranger-3.0.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.xz?Expires=1737238483&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=g1xoCdjdFF4~5wAIQeWL4PbdrkBlqHuwQ6lD-G~XrxuykEQaan0x300sgHbsTRlEVXneuqBPPGS6tmb94qjplJnHaqfwpe7tZPecTz3IelZbGXdbsJf3ZcTld0L-33OZ~EtRpcJnNxIozErFOyDOMnOiEbxVPdVFalB1EJANm9JfQD9Kjv3i3SJJncDEH92k7A958m55ppTLaMKaf0CWL~5ih0oiCsDLhOcmpTV6ciybAS-89KmVgvl0EpGhsFxWf3CLWT~dCQ4LO~M62i0uPUOZClb7vEou7vgr9iyQlDfgj7z5AwoD3ivwODtJTc~DwdpsweQAvcZzwh8S59ghnw__"

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Xenium Ranger 3.0.0 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Reanalyzed data gets updated scaled transcript view in Xenium Explorer and analysis summary features introduced in XOA v3.0.
  • New rename subcommand for editing the region and cassette names.
  • Robust to corner cases of importing transcript-assignment data with empty cells.
  • And more - see full release notes.
Release Notes

Xenium Ranger 2.0.1 (Jun 10, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.7 GB
    md5sum: 45d207dc432226dc003a31a287f5ec08
    curl -o xeniumranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.gz?Expires=1737238483&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Yw9ZTtsr7NZSdY8dC9qc7aU1vGoe5-6azCClb2lDs6ZyRJFC5UUONaZkSZNoq9Jf4liyyHSXZ81nNIcM-MMBBbaAuIFXsbxnGWKRf21LHECZq7LcXYhN2v5M3l5o5Nql28xptvmb4pe0sYwqjbN2InexL8h99vb8xnuPOCc-LC2Xbw3LEYOMotimjAgwNyEOctA0NXNiWqF~iDOBC3viTeNIypJYrvM9aq-hAvlX6n5cviq4yAOr1u~rvvIMsriDdqSv-KVCqAVoAgTPfN8OdSulFLgjSjLA7hfZpqITRciwrPVAV0JdeIUJypSQwvjLol7Ju4nCPTO5GpzUt6qTmA__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.6 GB
    md5sum: 244bdbb3d159ff557a7747c03ec487a7
    curl -o xeniumranger-2.0.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.xz?Expires=1737238483&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=aqgBr3-dtE4YIBI7tzQ-BdOrIhfDfcGrXLxPOtEl9Cgmg9a10nSeDnk~AE~WzuLlHNCrm9cmbJJOCqYfOd9IhXJ1wi00l9mn3CYMLQkP~hiQCgYayk7S21VkwGKiie5hZrngPPE1nKqArvnty8aycwxXJjvOKxkwcrECSUTgyMhtYLsim4NLbPkvqRQmuMnIWhHp1STBBYKTl4AqrwBlibBUU4jP75UEEcENlFiE~lAEoRxs1Ft-i2peMNj6Hw-1bD9gNGMuTBCmK~QAT~Uqs5QFGbbMrbw6608ACkR-ImISIq~piTtlbc8vr4-aFcv1u5JDfG0D4ns2bPSlzOlE5g__"

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Xenium Ranger 2.0.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Default nuclear expansion distance is 5 µm.
  • Enables reanalysis with multimodal cell segmentation algorithm.
  • Interrupted runs can be resumed.
Release Notes

Xenium Ranger 1.7.1 (Jan 23, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: 51c373964e46c041e08ba73888657edd
    curl -o xeniumranger-1.7.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.gz?Expires=1737238483&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=kG9ub1PE3a80bb-srqivF22nWQ-l9BYGnVm-S7wk7JpiekXDLMlSeB4~x0Hg8lbVzkveS~sOBwN5EwUbv5i9vXkT1utm1TU9rGoDYuKZX8a-mB4VPMuhBvKDCa80a8wVkZAz~uQOEd1AX2jUX7PxvyNusD3JTFLjY13wouRnsOApckgjX3YHM5tKsV7te74sEEalWXsPATaaq3D6PfnzFPFdR8DW7VkmG5qriqWuogfinwx20Q1jxl6S5LNhVhWXPh9IOIzXP~KURTxWXmgtLui-xPViUngBYfe4lGL~tSu3Pxsxo8Voi3bxcx-sPwe0QE34zdBTdqYr838PhgwOEw__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 43e6e4433303aae30973682dc5219f20
    curl -o xeniumranger-1.7.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.xz?Expires=1737238483&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=iQu1jtWyVfTe5J035R4~ZjkAivSF6OGfBDmKABnVJR64Ld6eVj6hSZDreD2sMNWavYDjlbw7Dikq30drWEiAwaO3XORTkIzAVfZ5WZ~WuQYuFRnAkPaX1W~tPrhK11CAf3WCthvyA~l8YhSb1ULMj6Mj2T0oBoagZYr2gEzAqzUSffCNBpqyhQEEZN7p0mK3fwBsnPJBzu1OF~new9zfbRoHM2dOq0MmJybjTXPXCaGvk8Xq8j-XFcsXDLSkTO5QaVDeYr5fEgrvuEaSJCL6W64dHbCEoE4gYYPyaQljy3sA~ASd0ytZgiexXARofVH~PG4Anb5lk1zLZG-2h-lVbg__"

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Xenium Ranger 1.7.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to latest version.
  • Image-based import-segmentation now compatible with segmentation masks.
  • Improved memory usage in the import-segmentation pipeline.
Release Notes

Xenium Ranger 1.6.0 (Aug 17, 2023)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: ebd970ceafc057668b9e664df310a5fb
    curl -o xeniumranger-1.6.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.gz?Expires=1737238483&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=G9ec6XMwHtV6igY2TcyY9slyAWuSk96jDEXIhsSX3bkxpIuBuRTirDKd3b7S0MHhcvgRK7Rp9ZgYmHtopY6UzoZuQRTUBtIkx6~C5vvk4TOZOJjLVqndXU7H5DQA~Gn6kpLpdJ0NmQQTLfM6DpH6X6G1yyLpuJfZldJ1-xIzjtUcYBA2EeddaGy6ef30zZCYLBEHArdhvUFKK6OZR1QuiuqxTZiy3z1~YcAdPINUu91cz~a94b3QlOp7Pw2AqOPpMGcMKoQ7ZQ21V76451LdlclA-EqQEt1nZ5ToJMQui47ruyvpEgUmYvRu58w~SLOfx8ZG4SBHacTO8NdgjkU3ag__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 6fa799cfeef91264fdc174ad43b6da3f
    curl -o xeniumranger-1.6.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.xz?Expires=1737238483&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=OcaOJlqVGyM3TkKPQqay9nz37X9WyAGqdkGTa~as635qSoUrrEUt-4ijdy7kZpSy2YoCVHQRsC~mO2EI0-Llsp50i8yyNRk4fuPHDp5dNcx~DV050FZkzwTI6ZKlbYYKBYFiqTHixIQ38FOhhNV3pVhtMdqIJSFKmphCGR83-kU6FgOSswYObZ46OEW3OkWAwil26NtlcVaCe0eqPanUtNbLsqTO9dYYSFecZFnpRVoBBpzgUC8TYa1zNTS4LWwgruF3IG-RAbJv0YOJK7e8S0sFEL08yv~seCf431NV4tivwjkEzDLbFKt7Nchryc3NLeRQvu4cda-QRX6Mh--cjQ__"

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Xenium Ranger 1.6.0 highlights

  • Initial release of Xenium Ranger!
  • Resegment Xenium data with customizable nucleus expansion distance and the latest 10x cell segmentation algorithm.
  • Import community-developed nucleus and cell segmentations in multiple popular formats (i.e., Baysor).
  • Selected the wrong gene panel when you started the Xenium Analyzer run? Simply fix the mistake by using relabel.
  • All pipelines produce the same output bundle as Xenium Onboard Analysis v1.6, so they are compatible with the same downstream visualization and analysis softwares (e.g., Xenium Explorer).
  • Backwards compatible with all previous Xenium Onboard Analysis versions.
Release Notes