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Previous Versions

Xenium Ranger 3.0.0 (Sep 4, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.9 GB
    md5sum: 10e28b33f0236a5e62d615dcd921a9b1
    curl -o xeniumranger-3.0.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.gz?Expires=1757870258&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Tv6xVzQOw~Jfji-UGvW7jOztzAXxaZ1xYECMtn5tua86szUrygHWcscbGxFq07WJiRV6A0PkRT6reGQ7FbacuiWHrTyJMyskhB7E3FUuHUQrQtz6h2gzMOr9dO~8xMbv5sGd4DWjWsVhx-gX15fqgcYJqqWqitdpbKBn32y2Z9rmuabqpFIQOnevpwCX-qix9QB-J8Aa1GAnrD5cSq~98MZ7PT9oFwxezuRPMAzQq6UFdNcQPW6nnFJ5YO7VJ8LbMTQ69VlTWUPJLKaTxfkKF79ziO-XAv61Ry5rBrzJqsjXT39TrQP07fEWlMDG6iyl9RbhgbiBAF9K5-4u1OxiKA__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.7 GB
    md5sum: c31be85a7e19edb8da484c295f3586cf
    curl -o xeniumranger-3.0.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.xz?Expires=1757870258&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=VXTj0TO6kHSs4rWFpkto0yyX62K-2KnnbQFGXEA021tcrs3cikkI9C8iIf1JnLxnEaE7nSaLo9ecazPas5z4Z8auu64zDkKLtrqwh3EYv0dQReoMuf8aYfCT3-nLTfSEHHGFtqDagMnyypkLg-IgGEY07jISSQ~SxsNH3kkO0NI3AyyJHBzh9PF-3u2jBoMOaucLTvMwpBOG4ukoytdAq8tK1til9TsMljYUtUMHOptA9PEO6wU2gmYFm0nONhIWlBdsnhvxdnah3JYXpOYMUkKQQTvUW0Tsc81WLuDBOx~8r5XXGlrYJ3kanEldsGzbYYp4Ru4hF6zec16T-05Pig__"

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Xenium Ranger 3.0.0 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Reanalyzed data gets updated scaled transcript view in Xenium Explorer and analysis summary features introduced in XOA v3.0.
  • New rename subcommand for editing the region and cassette names.
  • Robust to corner cases of importing transcript-assignment data with empty cells.
  • And more - see full release notes.
Release Notes

Xenium Ranger 2.0.1 (Jun 10, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.7 GB
    md5sum: 45d207dc432226dc003a31a287f5ec08
    curl -o xeniumranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.gz?Expires=1757870258&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=VTRDBLS7LDazjD4j86m7kIm3RxFGISV7Tt~Yt~LuA8Sk2Z8D5fxtuQHfBLw77WtNehdvs-6fwBXE440vhOXd0nkzz-Jom4RkDP82Ll5kbFTOfO0BgNl7yTiShQzo-biljs5JlkZIMvb2HfavsbO-FFiEisBNIVcaAqGMg2Ebzr1ugBbZnKVG2duxnmQcT5n9Dlbf0V1JAKl4YV6C0vnKLA-PkuyqhZKvZ1tFkwwu5kWp0x9JjBUulbxYVBBw0D1tPrQbx000ipUpMzU46vjCtoALamGKY-rHzwfwkX5AxQCk00hTmStb3mRtKWjqf9aAvbXcFWQTM64BhATOJUKUPw__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.6 GB
    md5sum: 244bdbb3d159ff557a7747c03ec487a7
    curl -o xeniumranger-2.0.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.xz?Expires=1757870258&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=DVAYxMZKNZtjod7YGU3r6E8sCLYs2xzoLx--tpB~79q6~gGxELwT27lzwBS9x5PciXDq-KPsjOBbaMmHjnxgobiTskjXSu2vL8jh5VAb1Q9EoFicf1Lkb6bhB2tcyZM8mNxAAA347YAanM31szGZwtdnVz-I6-wPj5XqLsqvJuVbyWPnCDFU-iiD5rNwNJ~FRZKkhE6pR8VQAarHopgWgPn8XaxKw3PPufv8hUyAT5rWjVQH24ez-2tInQ6K7rGYMJr974u-HlSe2GC1QRqDQjSsr4m1MHdRpgmDKUxKxhn9WHHukWM0uNboXHr-iXEiybY1f-~7xbsthPKhtL~7WQ__"

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Xenium Ranger 2.0.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Default nuclear expansion distance is 5 µm.
  • Enables reanalysis with multimodal cell segmentation algorithm.
  • Interrupted runs can be resumed.
Release Notes

Xenium Ranger 1.7.1 (Jan 23, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: 51c373964e46c041e08ba73888657edd
    curl -o xeniumranger-1.7.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.gz?Expires=1757870258&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=UlALEDRsOoHXLE-vD-uxomQeP0FAiazS~IyU3uE5j6mYwvha6jstTY0g3OISa3N4HV1ZDR8-vGs5qcr90TdfQHt-2Lhe4~Sm1mZkyvGGvjnDGB7GpVupx5KWfZwsaFkz4Y-JIS7h8H-fZhDJ9xgpU0H4JQ-N-pbRzwhahWi1B4-wC5F2Yim~56UBzDAJ5RJX2Zd69hObwucwLVQR5sx0xupxsEg4YfBWK0FFYfqasWl-IrDPl0~r5Y4wwRNsFMSO-pZ-XFQ-dW~6GWKPndFI2tqw9nEuhRHYiPCXNkAaiJP458NJmrWGth9l~ZjAx78rGn~ePJHy-RTO750dypgveQ__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 43e6e4433303aae30973682dc5219f20
    curl -o xeniumranger-1.7.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.xz?Expires=1757870258&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=ieuPqezAmz2bPUCLKQ9BZ5AWSHchjDq5bTQXzlTJ8snWifdZ~MkJr99HBlpr7VQnHjhRW6igPYgtNwbuwdwKBjiEJ6rgPHPB4bgBEzvt-sAQ99TtG-7Oi4iAODBnSStnp-4DEBJ8u~H2CfXLbnQIv~Ey8qIPQ6f9FL4T8pLb9XodBNn5m7pak2oMawalnjvlIVfP-qEugqDOygSyGCy8jAj~n5ndnHdyMQBkzFgMkIkWOTXL7KMMHkGAntN1xidIdz8W9GFRSsvg6nfu0i9nMpzKrem0Peh1MztRbJSKKBRlAC8xEl-vkizo7VAMpdembyp-2ipibPbLUGnK1eHmUQ__"

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Xenium Ranger 1.7.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to latest version.
  • Image-based import-segmentation now compatible with segmentation masks.
  • Improved memory usage in the import-segmentation pipeline.
Release Notes

Xenium Ranger 1.6.0 (Aug 17, 2023)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: ebd970ceafc057668b9e664df310a5fb
    curl -o xeniumranger-1.6.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.gz?Expires=1757870258&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=X5f17OnhZFjdWgN5kUTF0OPK1lnjYt~WBozFdUCrWPgNqz1w~bUvo8fWs3niUGYqMCvl7SjB59~Fbci0aflkL2Ulan14DFTZNfW5y8gbNNHYDDvTaJV8sX4esMGdmlTWbUY9TwkDm15BjBvrjkF1PndmeSg9S01QQkKkOulQxvlPtwP4PJLHhY7crsJ4TwOPrWPHRvpFp6yHYeYpnIkzN-aRyhB2RC8DK~ScyKHxVmJqRxKnhOuzH7LLEb1NxqDuwPAIfRKggG0rpOUAlb-73LFcpa6sRAeQe4QF3Ll8R7WtSxIOQVRmSH74ybXWyLuBc9B6F9goLxSKOfP7qu7XcA__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 6fa799cfeef91264fdc174ad43b6da3f
    curl -o xeniumranger-1.6.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.xz?Expires=1757870258&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=gHthvC5pzRsqTeImNKetkARx2TmpgT-NHFyKg2aLCqe821mTTPpAvdcwRwvKRfJDsZLXAVNSvwYtdh1e2emaic6yhN58BuuX~oTU5A3PzzfHcHozhymRWSeLapImTakarT~FkoGUYcrYEO~7DxNfka4l97Ll0OQGW8YyulFRUX8wT8HrYRFnEsTS7eKqFhRwpoMvaRneutAbJGTczjlx1qGH3-jfSOcxqWCHF1Q~ninhME7MPTbKSMQIKbsc9bz1GPsUNMcOibDq-r8dZFisHxk61t~Y5ECX8LiY~8u0hEF5nPvuELkU8NcGEmMq38KVWlaqdMPi0wvBVD32V1MNgg__"

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Xenium Ranger 1.6.0 highlights

  • Initial release of Xenium Ranger!
  • Resegment Xenium data with customizable nucleus expansion distance and the latest 10x cell segmentation algorithm.
  • Import community-developed nucleus and cell segmentations in multiple popular formats (i.e., Baysor).
  • Selected the wrong gene panel when you started the Xenium Analyzer run? Simply fix the mistake by using relabel.
  • All pipelines produce the same output bundle as Xenium Onboard Analysis v1.6, so they are compatible with the same downstream visualization and analysis softwares (e.g., Xenium Explorer).
  • Backwards compatible with all previous Xenium Onboard Analysis versions.
Release Notes