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Previous Versions

Xenium Ranger 3.0.0 (Sep 4, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.9 GB
    md5sum: 10e28b33f0236a5e62d615dcd921a9b1
    curl -o xeniumranger-3.0.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.gz?Expires=1740257772&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=bHYjA9vFOr2C3NqxknzcX7r~sWr-hAjg2xi2htefvaeFP4mF3OhIBF4TpH8UatTX4G~bVCdv8sabdUIuO-6HejEkwRYE3GgDaVbWjrr7nHXSSgAu0c9k2EFk1oEq5nxGX-3eHNZ9cnH8TSFL2JBDR8TEFV2AYvMEjztEcU09-AI4pRI1B4b3xCYvt6kiVv7v0bukP6zvyeNq9VHEH3MvO-GJvg9ld0FF0ggIIUDknl20tVGQ9dFixw18QT-2irTDa9UkeFaydKLihs5gj4Hivgu7MTvbouenLyIhOZoZtMwSdu8IyHv1MJtlnj1RHsld3F1gpR5dXinhKfyUfQuOog__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.7 GB
    md5sum: c31be85a7e19edb8da484c295f3586cf
    curl -o xeniumranger-3.0.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.xz?Expires=1740257772&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=BpCtNoO1dEGSnwYOtkW8WbFzRJ0CZFbJC9vL6kqSIjfzKJPrdlXIQai0VQv4tWR88XaeD8wY7WTb661DfvCpDLmtUhEQbZf15deVult-rfdulAyyTUu0g1P8KDkdtkubC4L7wyutpBfmxdFCfuPMdAUgiChMh3sCK7s~0VVu7Jn~WfxorRI7OGx0M1lIdvOjTjLRgt3QUd1~WujnJYPmEjgvjMM474ouDOSqY-8QFMjT~0eGagMnqAydjD~55A~HD7E0zHJPr8Cm0RF7E5EmwgJSidWt0yoOjDAL2dVjT~Z18fjT2AoyF0oeAmF9E1471d1qNsvnrhBUSrMZyLduOg__"

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Xenium Ranger 3.0.0 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Reanalyzed data gets updated scaled transcript view in Xenium Explorer and analysis summary features introduced in XOA v3.0.
  • New rename subcommand for editing the region and cassette names.
  • Robust to corner cases of importing transcript-assignment data with empty cells.
  • And more - see full release notes.
Release Notes

Xenium Ranger 2.0.1 (Jun 10, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.7 GB
    md5sum: 45d207dc432226dc003a31a287f5ec08
    curl -o xeniumranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.gz?Expires=1740257772&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=bd6A~5PyeJXsvPIQ6VvftsMHdbTTJyWQndU~IycJwqPtO4qK4v9rIkajvYVT24Z54jH2Mczmoa7e7SZfYBhKvUB~edfpSTBNEk7Qt9nSYDyW6y~mTvUNJfSw4KVxZaZ1r961haEkpbjJEgUagUPsGHvSjMDU~sYJ2UPHcRbETnRIYxJRnAg5qM89WBhP5P-6I3F5WU3Fy8~RmbZ6xC2307rzDwjAAIF0GEpc~zxqtt5FguSl03S3rzIBWI5Z2fL44Er-M3wVgyu3Wcs7eHqJE2nE4e64v4BymA7Hdqx9UR57Al8Ha46AEi6chWMV5ek-ptYoj3lRgpqG-zY9sft6aA__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.6 GB
    md5sum: 244bdbb3d159ff557a7747c03ec487a7
    curl -o xeniumranger-2.0.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.xz?Expires=1740257772&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=C1C-0x72Bt8EjwWw9LO8f0811a1AbwCpOolpIigAhjyJKxN7bSNXyc3OVZ20L9vTrGZzUazjlpiGtNvTsinVd4k4cN6wMg0H6TCAOw2aakpL6OzlJ9kRXKO0shJeQaDyoBCsMrZV7fStZJjQm8E45qKLWZqCov~3hrh--uoOgcF-IGCfP6eEeT6cuwVcjS1Jvdpn1V2rNrk7AyrDhQ1K813PQ5eR11lBn6kKuPU~Ox8U6Neaz~8ZxE6qZGPWKCdMXkZCL3DUYl7AmWkJ2ywoISY2pZkMkgTMLXdCKo5VeadDv6aSho~C1BwzHf2tv0ykbjrBR1U9VBG71-56BdmgvQ__"

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Xenium Ranger 2.0.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Default nuclear expansion distance is 5 µm.
  • Enables reanalysis with multimodal cell segmentation algorithm.
  • Interrupted runs can be resumed.
Release Notes

Xenium Ranger 1.7.1 (Jan 23, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: 51c373964e46c041e08ba73888657edd
    curl -o xeniumranger-1.7.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.gz?Expires=1740257772&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=gxtaib8mJxlRTEQIl93nQMTNh6tr6ivUh~n2PrBu46bO5PbzbaJNNfok2V3XAyRdObirmcft33AF3aDaTaIrIAckN2AuJCgtiGmnXdJYfFlywibmkNYPcRpgqoObHGHCl92Fk8dA1k6fIahOGL0cOH8v2hNUlJZ6Iq~i0UBku0kNgJLbgJsFLjINhMytq~lLbsWbQK-p1Y5hDaYNEAmipmVF6EpDixLQ5jjkgvJNVN9dc7HEGHjc7hbs3xRanYuBKxj~OHmvYwr7ks6oSGTx7oq9xme-S8JWcUWpiYQUynCC57h4~vDxwD3yLyQYqtDpqVae9w-RbXZ4QR-WNhLVtQ__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 43e6e4433303aae30973682dc5219f20
    curl -o xeniumranger-1.7.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.xz?Expires=1740257772&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=RPEiK-OXizr9WHB2HovGfIJrBhXqxhojuvzq42fSoZ~8agpEvJVpf2UfXnwfzBkqk~wTyhThjzKtSVz5S1usvCAz4IRTdzU2DedH3AdbqA-JQIfd~SekX~LIqTbTz08lwjwvyTKkjtAkPnjgYNeKEDdDjoYm84ySD7iNyXyS9blehuO3U5qrb7RpuZ3hJRC4nB5tgU-i~TYktvZJ1MUgJwymrPIG4QfLkv5A4PYZhk3QpZmKPxjPS~1aBUP48mlmt~2DEIrsXkJ3MOuSPZfSKPWztvpUgg6jD~6euFv8h0tLeSvyUDEPqjwyfAgAOJpmPXBc4eM5744aJla2~G1qyQ__"

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Xenium Ranger 1.7.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to latest version.
  • Image-based import-segmentation now compatible with segmentation masks.
  • Improved memory usage in the import-segmentation pipeline.
Release Notes

Xenium Ranger 1.6.0 (Aug 17, 2023)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: ebd970ceafc057668b9e664df310a5fb
    curl -o xeniumranger-1.6.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.gz?Expires=1740257772&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=AdsoMMufXJDZjAVOmUCdq5dKHHMaaBj7eHuEaDxZxWvrPfSugRSItnVbCajvu3DdfMNpDZkd9-0AyrqubBLsE5uyF0-FGU56qm4E6-Prq6c29HjU4fkdN9bavnNAwVgntXFO69xN6VWenRfn3Onus8Rk9T8LU3OuVeMSjIWn1orA50ai2I-75JFUQRqqHMAKlE71g9mvFr4t~2u8a5VG4O1elUPmuNxkqxA31PnBkKP4BZvIlSJWsVvUxBQ3NcbgfZ6IGIgiMZlgpz1BHIetUj50jgHkRCKPERFiw9EPHXeL0Mngz~~0uJo1UIS~hjxiyzpGn89SdUfh~FQwug5UHg__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 6fa799cfeef91264fdc174ad43b6da3f
    curl -o xeniumranger-1.6.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.xz?Expires=1740257772&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=YsKjIQIDm-K1tTLIqlAAsGPWVGJvjhac6XIgW5ssZWC3zGyeJwIY6izDBRipXbm~BQXUSXj3X1Ca6vzMhjSTje6W-HSfF2ioCRTWo94b59M3P2-umvFCZb1MgN2tvyiCj2st-0dnLWD7UXmX3Yl4hmODCmeCoTEfvXgSPvhip6Ie2BPP1DfhMpO2h~qnq5D3lIo8R4JttCjcaTp~c-kEuvxkyfL-NIf65WC3E~wRqYQwoP1UOF8v-mK-60M0z4eiTqANmP8SQ0r61jFX43l-d09XmlQkCwBEC5tPGYLSR4waHu1rR4xr6pu4I1WF0eOGnGQse0Sv-Jhl778uMGKgXQ__"

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Xenium Ranger 1.6.0 highlights

  • Initial release of Xenium Ranger!
  • Resegment Xenium data with customizable nucleus expansion distance and the latest 10x cell segmentation algorithm.
  • Import community-developed nucleus and cell segmentations in multiple popular formats (i.e., Baysor).
  • Selected the wrong gene panel when you started the Xenium Analyzer run? Simply fix the mistake by using relabel.
  • All pipelines produce the same output bundle as Xenium Onboard Analysis v1.6, so they are compatible with the same downstream visualization and analysis softwares (e.g., Xenium Explorer).
  • Backwards compatible with all previous Xenium Onboard Analysis versions.
Release Notes