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Previous Versions

Xenium Ranger 3.0.0 (Sep 4, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.9 GB
    md5sum: 10e28b33f0236a5e62d615dcd921a9b1
    curl -o xeniumranger-3.0.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.gz?Expires=1751438227&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=UIhMfely6hIR7KLGeukuolivHmR~9J2W90mOikRMD0qZaC7D8DmYSgXbTD6MY5vXj22s00Tb481BImk0KJV7gDRQvCtd1T7UPX-bEXZCTzVABcFyAnhuv8AIBmWCoU5YxhAB0abrg9zYyHMF7JvP-Jc970v3gu1UszBcTNWrG7vmSZ~IWODljGz57rbWEpythbyBqhu8JwAs3gvIA0xfQGWkA3SAcVT5h8dOmbt6fije2NKlVTpq9suBhyM9NgMpPNsscjiID-ns3GCKIOaa~Zx3q~YGQRi08wIdgTgliduGhfKwngKlA~txChhaw1W-e1GmWu5T4mSQMGANvLBdKw__"

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    Download for Linux 64-bit (tar.xz)
    File size: 1.7 GB
    md5sum: c31be85a7e19edb8da484c295f3586cf
    curl -o xeniumranger-3.0.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.xz?Expires=1751438227&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=lr71fSpHMD9dGXW2Ttdz1hnvzhE9sKTB8S9zQ4tLxUnXzehX2Y5sGaTCHFhfy5sgyNob7xx~KgQtcRxHjtD2MMQ2g5Tt5jd6zeidOZPnSWxEnoy8P7hlRkhxo2OTXqeA7VGDKrg1KjmWg5VHG2exNinACNxxVwdsLqUtmcE~oQFoKG3KbkDVk61mbiOYGz2mGfkLrzzVlGM3Kjkt3eKHbzv1iREPYKp3pqH8l8DcQw4hyMwlk4mmD4~Rx30PXGFa6fYFHJdLhlcVD7mJz6FYZtC33SkiYBScjlX0MVRBQ3xHuLG195iXlqZSc2O4lrnFGDfPdK95cQ2Qa9ZajdGoCw__"

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Xenium Ranger 3.0.0 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Reanalyzed data gets updated scaled transcript view in Xenium Explorer and analysis summary features introduced in XOA v3.0.
  • New rename subcommand for editing the region and cassette names.
  • Robust to corner cases of importing transcript-assignment data with empty cells.
  • And more - see full release notes.
Release Notes

Xenium Ranger 2.0.1 (Jun 10, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.7 GB
    md5sum: 45d207dc432226dc003a31a287f5ec08
    curl -o xeniumranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.gz?Expires=1751438227&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=UEXhmnvlJHgbk61mP1WykV8TtLJfnFJpaDrnxZWo4nqK8gCybDiKrA1aZzkLb4eC8-8hXEsdzb-D~7LFZBEliLUtvOT05qHRPPhMIXVUxn8fDxiK0QNbF2XvE5F--iWvnsfjDzsYIFSRzKcXxaWCsKgQlxPnnUk9uaeJ4TWV~I-mcxKratTiXTtWXQb8aiKy0HV5zJxNTdAi9asXmy3hsBClUhfM6KGGUgXsUw-7qO8UpSvrOTsdIBJGDCaBmDRMfvjI3VvnZuuVbmDWjwb7UgHZDfXfyKjzXob66gHGYx66MOLKpOa8IhrmFeVQ03z-4aID7uAoHrCnEdxm41SLKw__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.6 GB
    md5sum: 244bdbb3d159ff557a7747c03ec487a7
    curl -o xeniumranger-2.0.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.xz?Expires=1751438227&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=F2NoYQAglZunML5K17bnjD1aDT5-b-hQhEC~mQydn54b14p4hQeigvAUxb6zR7xvIMczbsOz0hJgWqj74KUwig7ehSpKTUmafS0ql4tVAEcFglHCAPh9MusEgZL~BDsQVtT6AbpcfrmWmoQrM-zK9RMgb5Dc89ykB9qiJx6hVxBrF9fMy2m3rEnuYetCh5QWDWoyM6-NPJ-kyvCqlPsMVTEZbrajH6vs4Q7cbND5LfJoAQQEXiz-eCfTyH99I7I2Ojphleow8jotCN77ldAuabu4lMrTWLtY6R0uaQhd2mz5PH6vw64sAZYrosYVnBeJBPezL453fjLMkeivNwdmSw__"

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Xenium Ranger 2.0.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Default nuclear expansion distance is 5 µm.
  • Enables reanalysis with multimodal cell segmentation algorithm.
  • Interrupted runs can be resumed.
Release Notes

Xenium Ranger 1.7.1 (Jan 23, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: 51c373964e46c041e08ba73888657edd
    curl -o xeniumranger-1.7.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.gz?Expires=1751438227&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Buatko4rJ1mY9SRsfLR~TnnYJvUkfwSdmqSa05caOd6tZewFhfqSlBjOOmBvBl3eknpTayDjLKkwsP5q7XAbLCNBSvEwa7tcwrrjDgc3PQP7kiBoL0fi3Xow6zi~~PmY99pnBgde~sPjfOVD8PrmnBiRv5TfGv~ptbEl-JcFqTfPWi~QOwhuFqrg3MA5-ywQmVCW~7Bnc2K68yVqvKXtuA3koxQ1~5sMwmFDylxAFv1ba3UahOYuZKNnr6vgaRRlqRyB4tSoyWhrKiVqueh45q45tZsBHfsYMs-qq~Gy8psJ6yxF26w-ECia84363rSb5VQXRPv0~CPiSNhieJwZ9Q__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 43e6e4433303aae30973682dc5219f20
    curl -o xeniumranger-1.7.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.xz?Expires=1751438227&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Zs2tYpsEPU-fGmohiP4y5UBl~AH84zcYy7mi-jmcNLCORXwtPnueZ~wAMz~Zw5ZzoPAI1QWg~8H3f5JY6jC9FF2t5zzy~JYIwvNxK4sV4FHNHWEXuK2Jx9Bece5oNV5znrRNY1v8usvOHW0jy5TIvlQyBsnaSu7AecLfFKcjakPIjl4qCDHXJCAHBFHaxKTWxX-uOsUNfiJpteoGlnpyaOY3ppdJLZAaVKmz7bl5lS~nzHgQdsiUss1~0D28NxtGzXgyjLY0Zn-uTWsuSBPJbQs6xpHu9D9TI51UA9AX7LCOMTF6BCq-Qbr7pRG50dRM8PqCZxi4XG5AHxVN7W~F4A__"

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Xenium Ranger 1.7.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to latest version.
  • Image-based import-segmentation now compatible with segmentation masks.
  • Improved memory usage in the import-segmentation pipeline.
Release Notes

Xenium Ranger 1.6.0 (Aug 17, 2023)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: ebd970ceafc057668b9e664df310a5fb
    curl -o xeniumranger-1.6.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.gz?Expires=1751438227&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=nzIY0go914mF88mqAdRE7fqihKxaHrG0jPt5w5Y8lo2Upp21IFzyLdDrVzzfKsajHwye4rrLNCPJ8X3sMvgTZMqbelEh6WvzU~Z3-DCGyCIrDoY8dJ-Jxxbcy1CSzr51ZO58ErH3uexiGpUB2oY~XIYc94IZR0oRczUvgQUGRm-jv9~IUiOrtYSHef1fyKKZZLqw89MPm9CE2A5676qHvW4wVv7XCpAH05ryIIiIwZzJ7xYLo5RMOuFFLFw0iApWNSCWslvoMPuEnz2wYOJZc3E4Q6NduA0xkXTkw3oUgn1oNqvGAFclzKreSCeUu71rv2-r-pRZ6ZmRKYrZuOHRoA__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 6fa799cfeef91264fdc174ad43b6da3f
    curl -o xeniumranger-1.6.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.xz?Expires=1751438227&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=LwMVltDgzTx8tXkjXSowsWv9-wzuWnMQYjBG9WGuP02zXukGvSYOULOZbvI0utb~4pO04hrTFXj9xuapxYhvK7pnv3-0YWp7cQYW5LDvbfoPaqTcPSJeiXWXgx6kffrdMF6miCtIBPhQ7KFpCSnOysE5soH2Y4YyPv0rcBHEEh9XyZ-3--PF9iRSeRptLyv-whQrLavGt3spezpH8pR5z2dS7lA99asItlIRS7SHGJO00mYZZRUAeE4e0WPEdnARZCyxzvDrnlNahTwpyqddwSeflwaBd8r6s1n93s9yf63VqlAT8CBnyahW6CjucBLtFLdKoymlhF-~cxHG1oK62A__"

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Xenium Ranger 1.6.0 highlights

  • Initial release of Xenium Ranger!
  • Resegment Xenium data with customizable nucleus expansion distance and the latest 10x cell segmentation algorithm.
  • Import community-developed nucleus and cell segmentations in multiple popular formats (i.e., Baysor).
  • Selected the wrong gene panel when you started the Xenium Analyzer run? Simply fix the mistake by using relabel.
  • All pipelines produce the same output bundle as Xenium Onboard Analysis v1.6, so they are compatible with the same downstream visualization and analysis softwares (e.g., Xenium Explorer).
  • Backwards compatible with all previous Xenium Onboard Analysis versions.
Release Notes