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Previous Versions

Xenium Ranger 3.0.0 (Sep 4, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.9 GB
    md5sum: 10e28b33f0236a5e62d615dcd921a9b1
    curl -o xeniumranger-3.0.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.gz?Expires=1757879247&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Drs~6zegABZHpkUxOTzrmLxKFau38YmoFnT10lzXHUwE2wHhhSZpSEZWqXGgdjuxQbMwnlSHI3e~GJLAkjmLX2A-dwR0KIn5RRee9ZVcbRMkMudayu~9qs1zGF2IdbkYNtbVJxZE0H8GMNoMdrPLy7Su6hleB2XATc7vG8ZGUSzAWZbZ5-lgB0WRnwxhkiMjVbigyQtfuOPOHsXEI5UEIXZ~zppkkXEAVyogu3N33eYU4d753c5LD8A8jxQ9PvZgUI8KCwZ9oOjPlLzKgzMTy-zzPpWuaGRmGMEmF4yz5JNaao4obMzqrwqP1Wa6dWedHEy~8LYcR-7BxQOUUA1piw__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.7 GB
    md5sum: c31be85a7e19edb8da484c295f3586cf
    curl -o xeniumranger-3.0.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.xz?Expires=1757879247&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=fDbWgUQswoUYLrnTV7LwGXF1t~q~AHTtNBE3vu8StBUYI4ZBOzskrbeh9Cb5TG07OrBibU0NGu-XC8086RT4Zj1leBQogbr8asYEdqk48UkgvQ2gVoKojjo99kwAcjlanmNNCcF8Qo9XA9ifMO5cQQzrQ~tJeYoFxEjf0GU0xy1QDs5u~R1WqkVvuByKJGRUDdiT96W7LkSzwPJnNwmNKMAs4jt9fgm3Hq9GXbi2YdV9bFGm2wIVSos~-Ojof3zoGMmA2bXoS7S~MYynKg48tGeXVCJ99lix~iygiPgJ08LS50UKPfepNySPiBNJKGXQbWEbySJ6Mt6cRCBgBSGsaw__"

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Xenium Ranger 3.0.0 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Reanalyzed data gets updated scaled transcript view in Xenium Explorer and analysis summary features introduced in XOA v3.0.
  • New rename subcommand for editing the region and cassette names.
  • Robust to corner cases of importing transcript-assignment data with empty cells.
  • And more - see full release notes.
Release Notes

Xenium Ranger 2.0.1 (Jun 10, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.7 GB
    md5sum: 45d207dc432226dc003a31a287f5ec08
    curl -o xeniumranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.gz?Expires=1757879247&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=OKySgRkX245SFJ-8Gy-SD5i1B2Y043nFB2WTtaXbNoW9m5hhpx9AqSwClweASj1R2IIbnrS0cMcDVi~ALFF4iVS7X3mTc0QUTaWJFzQvdEBCymRqGiEn~O2RY6KcnFyKhtu3hj~~P14Bs6hA4n~4NZpykZ42fHZw7mukq4StHX3nLMejWlx7oDkAZhztzIp1Xp3KknyEarlxjzz84n7E~Ti6bB-1VdqRDjakO6Pw4CpV-HbkX8hRTn-TlMqKME4sfGs6QONQ5vKtKH0n-8yRSXpKx26Sro6sL4SbpgwWJlvQxGZ2VEw8XbdC3c4ePETkvrvhoH9NynflE9rU3q62gg__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.6 GB
    md5sum: 244bdbb3d159ff557a7747c03ec487a7
    curl -o xeniumranger-2.0.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.xz?Expires=1757879247&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=OXLznemFmw~PCHmf5M43BcpgjIhiImGMWG7XfhFvyBobxm8Ln1B0Iw3Ik26pWy1yRl91gBN3JeZmP2S5RF6kV1MNtQr8zeH5c4AXjrvc4fhz~z6onG~c1ArGehglrvjRqjvRJnwJqRYq2GKVA3suCZMEDYiz6BkHzRdt~xhvgHf8v0LWFfXdBZdWBfa5OX4H~fkFKVb26R7YeH2CqRZ7BcOCGiJIC42NiE2AA9MUwhB4AbayPlNyoNM9RMHYF4GWK9CayOTpaXkjFY2yC4FcoJR-73v8jms0clkzXjRgawkk9eCklyw1CmR~ngPegP-k7bi-Ikd9AHvj4bxtCSBllw__"

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Xenium Ranger 2.0.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Default nuclear expansion distance is 5 µm.
  • Enables reanalysis with multimodal cell segmentation algorithm.
  • Interrupted runs can be resumed.
Release Notes

Xenium Ranger 1.7.1 (Jan 23, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: 51c373964e46c041e08ba73888657edd
    curl -o xeniumranger-1.7.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.gz?Expires=1757879247&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Qr3BZPypCk1KhEiwAknio3q2vGrRIpZ40Z0qmRZV-mmSuiOpH9oKx5IeRAQb3gRR~4bxmuIddkznmWUiLixbyDRYJhi6~EvzFkpMyVnwGJ~oeI5JJwaZTutfckyDrasZTqlsm82CnvR5~EpMNuULDswhJqWS~wD2VN8ha~FiL1LOOm4rhg9WM9KHEtBu4h3DFKSLpQyFvEFuR30N5ps3B9RBcfqunB99mqVj2kTYZzlBsum8FtMz7aDi9THcS7aSJQB5zjj7jzvqcBGc1mtMc2nlDvHUGQDZOPDyCBzKLFM3JPcS38QkdelnBkmgW2fqHxTI~2WbWGACKRVvwtv-3w__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 43e6e4433303aae30973682dc5219f20
    curl -o xeniumranger-1.7.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.xz?Expires=1757879247&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=eWdBKc5-M3mMlQvwOBU6ICmiMrqa9~9y4vIgsU8v1O42B51qBgkpTLG1xLQm9J3gfEkuGXv2~bl8TG7YSx7oJIg1YIyiOMUaiuIAqyiwM~3YsFk6BDIc0CxYhh9DHambFfwrtNoXpcG~YfFuhw4-d4m1XA4HvT7Fmyro1qbpU63c4c45TGiZSuQrqmo6KpM1~6l5oC0d4JbW0tYr0dbUtY4pfSgLx3Fhx82ejnvQLoTVgmZlbWAms9GlkTr5T0yQMfJ9JN4bHM9t6YYEGm1Xfv89QxkJvqCcC94y54xDDWtQn7~5FuOQOQ8mgt4P-anZGfA~94i0LUNRWdAtDUWKlw__"

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Xenium Ranger 1.7.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to latest version.
  • Image-based import-segmentation now compatible with segmentation masks.
  • Improved memory usage in the import-segmentation pipeline.
Release Notes

Xenium Ranger 1.6.0 (Aug 17, 2023)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: ebd970ceafc057668b9e664df310a5fb
    curl -o xeniumranger-1.6.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.gz?Expires=1757879247&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=gZE9cwlVqcmBkhe9HlcW-iyTgHz-4SrWwRL9R-HiEY6rmZdpVmDkttZfsyR-FrndyU7ZQasYcgSEkE22u1uF7D-RYC39fl8oiRtXKEGQdX3CZUOydxEx34booCOqkOYl6fFJEq2seRsfvrfWGySuJD~EQzfVA5dXiYYOUVPXM809ushqIlYZfBsJ~mBE8KJPV7UIXpOEoc4742s83lSk0J5cLhkIa4CO5jQq4r1vev4w1BGC1GhJt29DPPGrJxCc3JDehZKuzsAHn6PKALNhIyiA4PGOoHM~q3k2dIz2gnl8qWGRQzbejcyOKB0siD9TDAdva~OaaC7K4w9zBnxq0A__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 6fa799cfeef91264fdc174ad43b6da3f
    curl -o xeniumranger-1.6.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.xz?Expires=1757879247&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=cJgR~3F594t4g6lV7KuFrxdWSMMc0QzbYH1T4WcOKgWfe5B4RJuJBCLhU5V616JTHqtiHkCJBKDtpjS7y0JHRdFngOYf7FBnnW46dIoze4VN-D5B6AmIk-8Yl-RMUo1ePlzkKDNcQvPboXBRJ9mW3CXOmVlfMetS92VuJcIAERgYZMPBKF7OZJqtxm1YTsN0NXhZUxrAzxyk0-719LJ40ng5HjrM-O9l~Vq8M5YgtCn3HAx7iTYFXN7MY8jSJFSt0vj4~qDFPOtyzvoM4dus5oS9F6epAB3mToItws9vex8kNHMJr6iGveMyp0Duqmlk93NjHdGK00-SGtUom8d1eA__"

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Xenium Ranger 1.6.0 highlights

  • Initial release of Xenium Ranger!
  • Resegment Xenium data with customizable nucleus expansion distance and the latest 10x cell segmentation algorithm.
  • Import community-developed nucleus and cell segmentations in multiple popular formats (i.e., Baysor).
  • Selected the wrong gene panel when you started the Xenium Analyzer run? Simply fix the mistake by using relabel.
  • All pipelines produce the same output bundle as Xenium Onboard Analysis v1.6, so they are compatible with the same downstream visualization and analysis softwares (e.g., Xenium Explorer).
  • Backwards compatible with all previous Xenium Onboard Analysis versions.
Release Notes