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Previous Versions

Xenium Ranger 3.0.0 (Sep 4, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.9 GB
    md5sum: 10e28b33f0236a5e62d615dcd921a9b1
    curl -o xeniumranger-3.0.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.gz?Expires=1751402614&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=oZDjybhp8e~008SdncqAf1SyYcETAr4mBFQLukGeEqC68ksWNYc3SByOjC-oFynS3WpiqZElsy7Tujt3Aqb-GnJDHTpxzLeR~Dv6M5oeVe7eBGGJx49XDoYScdzCX43WRbjrzFdcQajtC47xdn8KqpQQyu1YijGR1dWupuqTKKlQfGB3gcxvwTHh12osGn-UZaDrzhDXgywRVxDbtggvVhWGKcwnha7y3inF58z9R~mb01pargqh3i6cssYHgZYiljztLE3Y~MZ5p6lD0607UN8qCB~DHuxYkrP1w1g163jclhmRo1Bk5wq05Fg0mp8DXoNmMxjS8f~OMphcnTYPoA__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.7 GB
    md5sum: c31be85a7e19edb8da484c295f3586cf
    curl -o xeniumranger-3.0.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.xz?Expires=1751402614&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=NQvDMZsnnm3pkGFmOom8hMft3U-q74pG6~h64x0-CqVr9pd0tg9nACll5cCOWfeikBmYThD9OJqAvQeqx2Sv19Q~F0~mx3h7HL1oyCyTWx6NOqwVKCPDIA9ov0HWok6tR2ryqCNfHrlGR4CYAia0RNElSqe6jTsIoiA6imbpjfExj9n5G4GXqOVh6po8dLteeC8T1rduCqA4nkCy5DcoG7cvPNGaO8xv6xkoLkKPsGkO3e0YOWQfvB9ZyQGNZ-FODFYgdxlfJcy7GpBXz68Z2jeGzpmz8nmEMW77wodDcIMW8MUiMmAD~aMTW~vZDGJoNKJ7j8SoQjEjrNGuhhMgUA__"

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Xenium Ranger 3.0.0 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Reanalyzed data gets updated scaled transcript view in Xenium Explorer and analysis summary features introduced in XOA v3.0.
  • New rename subcommand for editing the region and cassette names.
  • Robust to corner cases of importing transcript-assignment data with empty cells.
  • And more - see full release notes.
Release Notes

Xenium Ranger 2.0.1 (Jun 10, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.7 GB
    md5sum: 45d207dc432226dc003a31a287f5ec08
    curl -o xeniumranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.gz?Expires=1751402614&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=iJp4S-Fzxe9J3ZCbXJxOOldzVuBxZ80zcnheuAF7t-nizuWsIlQ2S72IQ9UCrs8TKKAcS~SzfC5Eanc7mJdVRJh-D4Y~QhZM~KNNUedMCB~QZ9zjymKuzfb7wCnRD569vFk5vxQFXMdrIWIVQiGmoAtPufqqDbrFtu6twuLdoTL7seZEbwvm7sTupJG80W0s1FSAX6iFP0NckbuBauoHEw7X55~u3ianbVHbYbUR7CC6s3MbwnoddkcnWxueCj8i3wKX2UmqWe~O3X0knA1m43CJZg2jxUSc2RS06DKMadF4K-C-S36Ks6UBXwDil3~smR16n9hHtYtVka65Mpp3~g__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.6 GB
    md5sum: 244bdbb3d159ff557a7747c03ec487a7
    curl -o xeniumranger-2.0.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.xz?Expires=1751402614&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=FbGVTmN4HfX09QPY2gz5Be2EbhO1L~NMOAB29Y9wGhEOgJlFQluFxTE4fFB3ktprsWGq3EadYqv4VlD9LarNTRe4A3-tYNgy97WguZRB9j-lM~79Kd5G02JqJpo6MfPGPjO04AAyhS893q1VnxMFjkr9toNICAhZiSUGigOm4PlxzmEtapo~cLdZGCIGOc0I72lb-rEbkwvqBISeGxXryFVDxlbk5~AYIgiibuoZ1KQfj5~lTjpzajfgdMn5VGiWMQHG-SRShX8ec5ZEcAzPGMuQZ66C71COytfH6fA6oOyuee2bhmEqelSndXPFQvEyAmOxQ-eMqQ89bkG0J0OBQw__"

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Xenium Ranger 2.0.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Default nuclear expansion distance is 5 µm.
  • Enables reanalysis with multimodal cell segmentation algorithm.
  • Interrupted runs can be resumed.
Release Notes

Xenium Ranger 1.7.1 (Jan 23, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: 51c373964e46c041e08ba73888657edd
    curl -o xeniumranger-1.7.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.gz?Expires=1751402614&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=QZvKJTpih90lz4EKO3NyaFgJcLadKtliCL4I2HKkH2Vz~ClJVr~PT~kyzoC-55icGOU73GX7wCOJUiOoEGTA60sje6nHrdqugwtcBYKE8kr9DPe4ifxIM2XFXxRtYrQBj7wyAzlai6ImuZ1b3t1GV6Kn3F0S9N6ycSnV6Ru2JZ4tB7MAIsuHXuCGsUf2KbJkLsOv4EZyUSVFR-rTF2FxZLCwAyB7rKzENhDz52BUtvyNdnEX2C1WEW4zHHb52-nH9H3rXxApOVjQt6dqQbNHaZnrZyORtUgHIH31QtrSYZXxg1WlJ1QPX26QVYiYap2fdY~VD3xkznI~zLFqeremIw__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 43e6e4433303aae30973682dc5219f20
    curl -o xeniumranger-1.7.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.xz?Expires=1751402614&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=O8r8HOYHWyWQTC7bSRYyzHA1GBzMEo5JCpNymNqwLfyhMyN-qP~8j6bUwj0jLD45igWrVE6Z21UPnXDD7NZqBSfKvngumi5a8s8vA6CJ20m23pRwRAteCd5G0GBE4-4ThPKKHNMuanDVsxkSFATAWShgsv1vtqkYmoR67-5e1ke-VT9lHw5RBy6vgXFKq~yjd~ras7ElNcJF8azedMcuC6Mx82gAiB-~3cuYTUe5VTXzNHIfbBnT1Q-YnsE7O5qU4Aoq1fhkONstiHZ8-H3DPG8trotqpkl7t48NTa0NNJoGNTlhmrOJall66ci7rRePXLWW9pHzcxjb81BijhimAQ__"

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Xenium Ranger 1.7.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to latest version.
  • Image-based import-segmentation now compatible with segmentation masks.
  • Improved memory usage in the import-segmentation pipeline.
Release Notes

Xenium Ranger 1.6.0 (Aug 17, 2023)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: ebd970ceafc057668b9e664df310a5fb
    curl -o xeniumranger-1.6.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.gz?Expires=1751402614&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=AufZdj3Exc0KbitaahjMehn0I5fNbH8R4UpYLiG6vEdoqMUtuPf2wZ5iFAI~rbFRn7a-BiMXypI~lG5Vkev5NCalqDCCkKMAcZcUby53RMaAs0-YROEroQeYOXJOuAIor~-3s~iychxvCPwDTn1INF7ak2Cf-~nRnjJ-wvZiB8LyYjM5pa-ucseEOVia6BpPrmFb~F6X8GSaxudLzllEQTpG4GiiYb-2KHHjwapXfHSaMfPXbSq-27lTWIinibCtT~Sd1jD~lxJIqjESaIwpgC8dX8fnkOeTpUuSQbvnJSOx~nudtr1ILQEqMt0Q5T3J9XcSbjlF1Msz-I91~OsuVA__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 6fa799cfeef91264fdc174ad43b6da3f
    curl -o xeniumranger-1.6.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.xz?Expires=1751402614&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=bd2sR4JZEdHAX5CYdKJeU0sHYEmPzC~q~5wuYAJmSIkEbIbGvp8L~sLa0KeElBqjM3rsywlh94~b9CihnA1F1AB7AirOMMCKeb5D6LX8Ot~FzqmZw22ywlIY6B5UZdSbso1U6HVoPaEKdYNz3De-raB6gyZ9~aMk4a3j66h3xy0hOGxFlONJIIrjSqBAmzrD8orireKD729N0yHOXLf5C~~S5XHciwyjQ4cqy-JaaCvtOL8NlBZp6nYZcN~4hVgtQybDN4s-PmDdwVKbWZBfF1J9Ls4wHtsY1YlmKqMSMEVkE37Y3o7ZyPgG4oBP~EsYD5U0puP2hdU3Rm6EiZ5oAw__"

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Xenium Ranger 1.6.0 highlights

  • Initial release of Xenium Ranger!
  • Resegment Xenium data with customizable nucleus expansion distance and the latest 10x cell segmentation algorithm.
  • Import community-developed nucleus and cell segmentations in multiple popular formats (i.e., Baysor).
  • Selected the wrong gene panel when you started the Xenium Analyzer run? Simply fix the mistake by using relabel.
  • All pipelines produce the same output bundle as Xenium Onboard Analysis v1.6, so they are compatible with the same downstream visualization and analysis softwares (e.g., Xenium Explorer).
  • Backwards compatible with all previous Xenium Onboard Analysis versions.
Release Notes