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Previous Versions

Xenium Ranger 3.0.0 (Sep 4, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.9 GB
    md5sum: 10e28b33f0236a5e62d615dcd921a9b1
    curl -o xeniumranger-3.0.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.gz?Expires=1737229530&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=gp3s1ueoGTyy6vHlY0sCGSX59ZBGf50I7FOCtPqKHu3tzuTOxNiWsxZf4sHiBBNHnQqPoiYfl1Rkfjdc97cQEEcthSuCCsHqa7Z3-LGtyuvs5UUMIZU1Sl0aDeZ4mAaR3ZBUJ2zMrvB1ftq9T6DXrNkYa8YvkMPTW-uNw2cbCJncbbvq44CgPvOnAEJtjH3EZXtRT7TM2qncG8x1sgnqe6X0vW04viBmoTdzscRPnd5uqBqJgfKXw3j0lfrxUfZPBUnyIbOV5RFlrM0upD8Nj6uiedpHQGP7jRglsaKUpXp6hjgk2-nIhAPElxU~KTDydW7y9vNvy6pgLpoWcd8e3A__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.7 GB
    md5sum: c31be85a7e19edb8da484c295f3586cf
    curl -o xeniumranger-3.0.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.xz?Expires=1737229530&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=MO7TlmhfdWTE2usHMkugLruF0wzyy2TzzKibpTmgXN6phtfBMx9T68BZKe3Mq40T1Rc4mkiGBqcQFU0lBw73hnGnGhveSJ4WqraCKvYNS76w9WJfgTJXijF7bBFiiFk5uMttG2nOANsn6zcoKKrwPy1UdqGxUb4VNcNoB2lz2uHT71CSKmjE-J28UIXes6PDmw2E9dw-5aYcTeYfN8oMtOHgmrIPJx5p1pCUuXv1B9xz~RcIL-F1Dl2qj9sDdkbuGce5JSiKFnwpsmziX632NkHatsRRBSMd5hkDsChecni7VbrqtP986fRtipwt8jlA9eOXjnA2g4HOUseIRNILWg__"

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Xenium Ranger 3.0.0 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Reanalyzed data gets updated scaled transcript view in Xenium Explorer and analysis summary features introduced in XOA v3.0.
  • New rename subcommand for editing the region and cassette names.
  • Robust to corner cases of importing transcript-assignment data with empty cells.
  • And more - see full release notes.
Release Notes

Xenium Ranger 2.0.1 (Jun 10, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.7 GB
    md5sum: 45d207dc432226dc003a31a287f5ec08
    curl -o xeniumranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.gz?Expires=1737229530&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=AiwDcVlw2jlfJC8vuzRjTJGFWGgpjIenFKZRfVsQ2bjNSJ1uH3wJkUcQgexNWFdJ9y54UdYJ479xpbJWvfXCOuZbq3U30HrAYNvzPnnBfNpegoobtlppJbRaAZ472LPHpX6~CXqbhqfL9ktAC3WzyqkavVHmJmz07bcLVAM8Rj4CJ9KFH2TkqirrXTCz3YMImrSGdJnxBC4gdbmYprDqF2YZcXg77nbYZ-~NsiOyqccEB73u41D2~tWDzYavjcPAbQsVIbN~jO3XKIPu-c6Fgprkvle3x6VX~Q-ICGamwCrV0dy21DkBtZcsItxfSeg1dIZj2yO0mbUNkkS2f9TutQ__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.6 GB
    md5sum: 244bdbb3d159ff557a7747c03ec487a7
    curl -o xeniumranger-2.0.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.xz?Expires=1737229530&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=K28EMQVguJwOoPShJk6FRxSYuj3hLAy0OCY73gBQn1fqwTPwNIiwIL5zhvN1VNR9GSkolHCZ9PsBGrM3Y5sn7-VycUhiqFz1S0ijFtPR7y0saF2rKEju2lDD84YQ3kTEepVVuJybIfqK~utCMzGF4imI9IEnRDT~7E11HN1bADr2Qp3bLHEKWIBses1G4pSBRtMiYB17l11dQZDeLIK8DmuQtI8R6S3rE3NwcrhhGaBI0rywoyiQTWzx5Zvf5VTAr8xib8gvPJYZ1Vnm2OoI6d5ShiDVuj9il079DcCnGdcffk5Hlk~4BRNlSlqidybcqPpqpzBirD~PqwO8Oci3cw__"

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Xenium Ranger 2.0.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Default nuclear expansion distance is 5 µm.
  • Enables reanalysis with multimodal cell segmentation algorithm.
  • Interrupted runs can be resumed.
Release Notes

Xenium Ranger 1.7.1 (Jan 23, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: 51c373964e46c041e08ba73888657edd
    curl -o xeniumranger-1.7.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.gz?Expires=1737229530&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=l7Yoxra8djh3hugPNAzV-vsGv3LucnNNCxpjyLOc6Tj49T2g9om5UwTn~8WUeCpVLJiubzvjBGClNPKcA-iFGBEcTn5mLe7duWIRlB-Wx3l-u2rhrkakhahezS-byC~Zw5Lcdj6UmJMru2FYo5nIr94PWCspg-rCMC8NaB0EiHFm11werIUvxIGjxU3wM2a6wqryfwigYmlUijvtKP-KoLyaPlAS0QulsqRnAtyTOMYAGCFLAqKXa6TqIrchgGSzv9BWHUQ9Czy-ipprLjDm2DJ~AQFCw2CRKCu3bum7h38fK1Bf3u-x9GaOGSV-oxZNIfIMtl52L6v8jbpmM1e3dA__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 43e6e4433303aae30973682dc5219f20
    curl -o xeniumranger-1.7.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.xz?Expires=1737229530&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=gjXcj~Q0WtW-GLjHfcMiMTAtU2DFhZgrR8BDTfdo~xY0yzISEprTl0uISTcRCpDyFIpdBVWmA58i1~HsW4L~1CC8HmjAtg70kEZa9i3sgyE~UTwI1eJl8yYRTwMVoy~SkhWxSNo7n~EQnqKsu6ctU3VLQQSrHa86vpBquI8viOCnQ6ySnPOECMRIbniVf99GyzPUiUrXuHpKEq4dRvnMWP4t-yTII6hvsKq7FjGn7Tf9ydBVr6B1TtcGVUi46kGv~86if-VHejpJqLdpXN-U8kqpAWR~sAJHgAvBGYsssGjqc9VGOkeMpKzowqFwfdjNEc4U52c0hYGHZ6~oRI1V-Q__"

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Xenium Ranger 1.7.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to latest version.
  • Image-based import-segmentation now compatible with segmentation masks.
  • Improved memory usage in the import-segmentation pipeline.
Release Notes

Xenium Ranger 1.6.0 (Aug 17, 2023)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: ebd970ceafc057668b9e664df310a5fb
    curl -o xeniumranger-1.6.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.gz?Expires=1737229530&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=gD7ZEggfwhpsMwr8p4DRvsBDUJ5E7AcVsXkpQyxuZJ6BGyebJB~R5kHO3gI75yXwYvHtdZANwISpiebHPuA2c5wHStuI0epbtBqVTGNSFlTw7D8qJjak4ikuwdUh6JXH75W~7EX-aDJuEAadgMV87ag3N1CKAt-sdW-6oxZk5fXdO8fPU3Vn8BL0072B62lbg4~n23dYA3QK7DE2SmCIIPt7fQTS9kApAd7hIPp-loj5zXkaBA0v9auep13Egl0Mg7x81h4parWbkS12fgvFmp9PxiBzdiSFvnNraEBfY3lxTMC-BOF3Z~N6GdNP9oMI2tpgzQcO-mAo-E2LNp5Gvg__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 6fa799cfeef91264fdc174ad43b6da3f
    curl -o xeniumranger-1.6.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.xz?Expires=1737229530&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=kP6bc-HTueJ~S0aXxEOtepV1bRHbP1Afl-6BWpDn9Jmo5U30vGOluVvvfxGIcWB11J4Aydp-a-mPIUrYJhjQ0-tTXwWX5mecq-JxOQViB~ENTAYGPHpqyWiIUKGFE1GETbLR6Ly2DHvEwYz8zt8ngcg0CZB3ly~Y80OAo7E1LtMtknj2hYaCqH5nQ1pOuXwSIIrXWoZqiM1rPGjjKSoaTDnAvj961oKLpU3K903p-wpS~N7nG6mEOwehPX-BDfegSJLKJOa2mNgbZ7eq4Ohx4WG8Mv~gGK54uTXW~reIBJPwO-8K0MICc8ip~7z~6qxkS5JzoLHONUyx~IfnwZoX0A__"

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Xenium Ranger 1.6.0 highlights

  • Initial release of Xenium Ranger!
  • Resegment Xenium data with customizable nucleus expansion distance and the latest 10x cell segmentation algorithm.
  • Import community-developed nucleus and cell segmentations in multiple popular formats (i.e., Baysor).
  • Selected the wrong gene panel when you started the Xenium Analyzer run? Simply fix the mistake by using relabel.
  • All pipelines produce the same output bundle as Xenium Onboard Analysis v1.6, so they are compatible with the same downstream visualization and analysis softwares (e.g., Xenium Explorer).
  • Backwards compatible with all previous Xenium Onboard Analysis versions.
Release Notes