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Previous Versions

Xenium Ranger 3.0.0 (Sep 4, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.9 GB
    md5sum: 10e28b33f0236a5e62d615dcd921a9b1
    curl -o xeniumranger-3.0.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.gz?Expires=1740204751&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=gDZXyQWbngTSj3r4z5ZDswZWn5hSEvMV42HYMiW5gF1KkuaYX-UVff2CWlEgHL-D9J6m51YTLiBMp04zD9rgeE5Ryent9gbCBQKh-ZJia58DsrUXezsoiceVcSrFcKfja229nrxbNYFulsZ6VRmWutLDPDNgpDGAi7d8ijrwrLsox2~KTCyovQgzAtW30LM3WoerQugHMmYU7WW9jkXKuIT6qhP2IlHI33i0F1dn1Mnj8-L8Vi621OVKWzvPLRzyQBZi8A~24jS57NE~HHLePAPeZ0yPY5yK6lqlao6AlBz0Kf7cS64Z~ivT64RkK7EV-n6-Rxd4AepNn~e43~h-0w__"

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    Download for Linux 64-bit (tar.xz)
    File size: 1.7 GB
    md5sum: c31be85a7e19edb8da484c295f3586cf
    curl -o xeniumranger-3.0.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.xz?Expires=1740204751&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=ZYYtOq6W3ojGTyyhZ3tJp-nA4o0aCcmIIXg1CHyymCPz0dPEW1lay0mDVxO~1I5Gq6XYQ6ROxaEkRnyurHuVPU5xHcZsiG65yFjZfQ9LV8kOj4wyTVk95qK-8QOd5Q8M8Ijf7ZfcwA57Sdo-Z05yj0jdtRRRVixcjgo-04e1c4dxLmUzNW6phbbB4mBSP3wHmPfPtiw6uyRpAKGcvQTBjXb8kQDjVjPAcjnWD4Htd8g9tpycxWE5fqKqyq6fYauW5Hlz1ErmEYFfmObTTB2IK2aFQDFqjmL6F1mjttgtEn0MqT0ydnevfnrdR4X-1GzULKPiOnrtoKKvIRWvNZ0EPw__"

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Xenium Ranger 3.0.0 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Reanalyzed data gets updated scaled transcript view in Xenium Explorer and analysis summary features introduced in XOA v3.0.
  • New rename subcommand for editing the region and cassette names.
  • Robust to corner cases of importing transcript-assignment data with empty cells.
  • And more - see full release notes.
Release Notes

Xenium Ranger 2.0.1 (Jun 10, 2024)

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    Download for Linux 64-bit (tar.gz)
    File size: 2.7 GB
    md5sum: 45d207dc432226dc003a31a287f5ec08
    curl -o xeniumranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.gz?Expires=1740204751&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=btVEI6VIeiTdlIlyEdyDEY-ICZ2P4BS-YSe8NyJD0F9dneiDIqUIFpHeMX~STgB990pJQfHTwgAWsiReWqEhmgZbPudQicUi33YQAoGv8ihEbeKC7QVYtI8MN3D733vXE0jD7pYXCFXa8Zj3afoLaAGUzlT8O8LflCOMtD7Pm0WWZGxMrR41wGJmUfb3xnX8JfrVLObyDn0SViN7hoH6eIKpptA5p0Q9CWEYaI8KxY2xISaTnuehb9XKiKrRLP~mOFKD4AV7HbPe1XLBfsnzkNr755DhtXBoq-m20V9cn6ObrgG7Q6WFeOuG410rsi7XQ-ar4IgQoyxg34ZEzFUGIg__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.6 GB
    md5sum: 244bdbb3d159ff557a7747c03ec487a7
    curl -o xeniumranger-2.0.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.xz?Expires=1740204751&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=EuginO4IV3KFkMzwHpFdn69GLEk41O3XbrfM6EXIcWrbIqQAy8OFvuKFZxvtWhou1JEDe9hIoiaLGIEn4n7chqKirI8hkzdcll0OHCTnZwgxl~AQnh-pauCxFsUtHeix63I4bQCQokPQDxAL3CcTuKli3Aw5kejc9aabfuwam9LkLySUrpGZTjT1YujYWh91s2V2UZDmCqLbB0KAexJ~dgLSXH2OktNCwaY9Ioothjkbwb~kWx-eevkCOT3m6m7tnHmKdFcnw60OnhmzNefUSrZrBiVNPHLyxM0a3nrPNJ5X8Gt1rVwrs5z07Tx5M~Ka6WqH2NgaJ8JIy-lZ3MK12Q__"

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Xenium Ranger 2.0.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Default nuclear expansion distance is 5 µm.
  • Enables reanalysis with multimodal cell segmentation algorithm.
  • Interrupted runs can be resumed.
Release Notes

Xenium Ranger 1.7.1 (Jan 23, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: 51c373964e46c041e08ba73888657edd
    curl -o xeniumranger-1.7.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.gz?Expires=1740204751&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=LDLx9BstrVCgYk7Fka0Pf28Pbqn7JuqUZmH7a~3kMPjSMVN7CVsRbC8MtSpKAjZWwdM~XddekDWWSZbF0q7ZDX9HkehpeY6q0TsqoEGXYKo5~G5Y-cBwnP2xeY~SQ2nEpejfT6Km9kqnkQtoF-WDWYyogC-b2mdIVaLeOMV89V93DdQdpTx4KNkHqfZxBzpYk2zmCJpQr~~ufyc~En-XDvjrf-rW9zVEKfCW9bJGje-xqSV2S7neVjVAO3tVciS9GEkeG7KAtCofngvcqjDjuZGNvdSNMjpG1aSi8SaCUeXuQnM2bscd1aUI9QOmcMms76aTaDgEgVOzTtu4TYbBhA__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 43e6e4433303aae30973682dc5219f20
    curl -o xeniumranger-1.7.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.xz?Expires=1740204751&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=EBduVThmyOdOP2JWyDkIGBpgmcBbvKI5e8-m64zUJ60n~SRq~VJELWjkcfCmiJovvbZoGWBZqrvI~YEBKR~o0wz6sc9XipWBwDgg4Jmy~YpCkkAGgfeeJk2dpV1v1SGk0RZRfqZ9pavywWDFkMJyA07W7IRQbp2Bd0VUyllyMC~AeHfx4zSHUWj413g9LP4hkkCN4WXIwYnZkzPjJlWjrJ0X33TRotcRnuimz6M5XC1hxgB~6XX15xYpruPZJ1UwJJYiatK87J3I0vi0Hm2KvC1Ark15dXrb9LK5UfoVZGdhNIyRXDLFIALVFeRHgVU2PrAyzqs1f88GQH8KKkmDog__"

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Xenium Ranger 1.7.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to latest version.
  • Image-based import-segmentation now compatible with segmentation masks.
  • Improved memory usage in the import-segmentation pipeline.
Release Notes

Xenium Ranger 1.6.0 (Aug 17, 2023)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: ebd970ceafc057668b9e664df310a5fb
    curl -o xeniumranger-1.6.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.gz?Expires=1740204751&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Lz1~Eu7RsP7g-4f2IDozgju835WndPe1NbMNf2R-7u9TWsKAggwDShcRfHKXojpeRUbuxqTMsxMUAtEZS0rZg2ERUa-SbKTPl-dp-zE4v-9QdwtsHdjThq0aP3~R-eEm0hfrPdPVp1J98wbXxlfPfseK3cfahb27iBidLL1E22l2rG7pGScOIAROaRa~IRmz3Jj-Qlb8CbdEw~M9y8V22YzmGToV-jYNsRNY-z-EPsgucAI7e~1GpWDgoMen2qjHUzAtcRDSlIo8epKDyXBlixoo0Cb3C9YTteA5ow72fBIY867vQQvQ3OPgcp78rCabYX4gtxvP~dgk~VZdN8StzA__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 6fa799cfeef91264fdc174ad43b6da3f
    curl -o xeniumranger-1.6.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.xz?Expires=1740204751&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=CXfdvxQGr-84XHfeAesGG81BoyUjM15TGsRTbNOjBkC3duMTvYNb3PCAPioImBT33eTwBUTrk4q5R-wBAQ8KumM-yAjAoFKL9yuL2pylpmaLLfCrzBjgLI8kguhGs3il-RG44t2XayCF80e385Qfsq3qc-X7d8vMZckecL6X-iPITltnsZmPX0vbWLPvDr4n5amKK4hUc4ZZ8Qg6w4VehrVyIWpdW8ES1GRebarju9gxy~H9IHCOj~Fa07TwZbj~B-RlaJaoZi1rK1QgGcg9b60Mn~aFBbL6vjD7W277Gm37UOeOxow~~vyuKnLAIrG73nhMCK1fDEUiGILq0lfzkw__"

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Xenium Ranger 1.6.0 highlights

  • Initial release of Xenium Ranger!
  • Resegment Xenium data with customizable nucleus expansion distance and the latest 10x cell segmentation algorithm.
  • Import community-developed nucleus and cell segmentations in multiple popular formats (i.e., Baysor).
  • Selected the wrong gene panel when you started the Xenium Analyzer run? Simply fix the mistake by using relabel.
  • All pipelines produce the same output bundle as Xenium Onboard Analysis v1.6, so they are compatible with the same downstream visualization and analysis softwares (e.g., Xenium Explorer).
  • Backwards compatible with all previous Xenium Onboard Analysis versions.
Release Notes