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Previous Versions

Xenium Ranger 3.0.0 (Sep 4, 2024)

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    Download for Linux 64-bit (tar.gz)
    File size: 2.9 GB
    md5sum: 10e28b33f0236a5e62d615dcd921a9b1
    curl -o xeniumranger-3.0.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.gz?Expires=1762337398&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=LEOXHgaKPxi7hAF1WmV1SWl4-CSs8ZFkrxweiGB6P7XTHE1f7k9voiZNwOZvNW8IptTevtWXW3Hb2vnQlz8kBLKTWeQ7fT43RxajlBS76WOe4AlZOlTiMQOmfQWPMeL2DotVKfCTr2WcSBE3nqWUtb2gj-BCsWKLreI2KRkOWx5APThu3P5jYw0TDrNqPQ9v1NcTGLQ3MSaiZ8pKmyNAS~11Lbpp~w52GYRH89-wKkOuGdvD~F4CMxICAgAKFfLVj-GRlicTS-x5Zq1NnhzrN05aZb6NnF6-FAkCjdGUxTBG9anb4cNiYHzOyRczWdmKtoJDQNyj3A0O5LZ6CFjhlw__"

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    Download for Linux 64-bit (tar.xz)
    File size: 1.7 GB
    md5sum: c31be85a7e19edb8da484c295f3586cf
    curl -o xeniumranger-3.0.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.xz?Expires=1762337398&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=oeav6PEzrsOjzW1wp2OwbK~UKOYA1paCX2G~hQceCJUoRs2qclth-YWuO~ljZMtwiSDdlBrVhkSOYj2M0XfZDAKWgfCG3e2ujNGyPWCJseEP8~jCdxSO~mtQ2KjHGZWa8LPpIs89ixP-XfRaxNl7udibUJ7QDJOymYW~NLirrrTvmUuI6McjKGBq3R0LcJL~EuIQCjgxImur3SJsFF7iIpiSdNGR2wSuIRVqSWXQhxZxC6sQpX9FW7LEYDWM6v-Rz92CbL~2OcL0gzo~vCpQ68YdqksAWPET6pp5z0O9T48-vEvKXRPAl2LXfSP9Wic1NybYfu7be0bBTlPx2b9yJQ__"

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Xenium Ranger 3.0.0 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Reanalyzed data gets updated scaled transcript view in Xenium Explorer and analysis summary features introduced in XOA v3.0.
  • New rename subcommand for editing the region and cassette names.
  • Robust to corner cases of importing transcript-assignment data with empty cells.
  • And more - see full release notes.
Release Notes

Xenium Ranger 2.0.1 (Jun 10, 2024)

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    Download for Linux 64-bit (tar.gz)
    File size: 2.7 GB
    md5sum: 45d207dc432226dc003a31a287f5ec08
    curl -o xeniumranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.gz?Expires=1762337398&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=CkpSUtTb18h9oQQ7xncDb5QvGl7cYFmNMG9wJ8p~-XuAsTn40C-BzFvxrP696iDtAEsj-1d7h6hz5W6JHOwAp36WFpeiLVKV6DqLglRIFGOO1tln8DRBGRZODP6YzI79zIUXWnYD5I9YJkHOeQLIyKlno2pD1m-hn1jW8SZpzvBE8Jt5tnQDakj845IFlvNOds8y7j-t2VYl8gSHO4Jga00VEa~KCsVm931CfVkzIetSRkicC8RLbFDOTkyClRLhzFyWCrGMBY3VybHr3TEVFzssP2psudaMJJjuG1ZuttlwguCI8mnFWTn~1JOTD9~s48fe2Z-Xuf6lnTI5iYhQXA__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.6 GB
    md5sum: 244bdbb3d159ff557a7747c03ec487a7
    curl -o xeniumranger-2.0.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.xz?Expires=1762337398&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=VzHUrP-2D6oH7LuRvFiZbNIny~lR-hmHI2FyDUeLNY7WMZgRK4fpT-AS3YgXichjk8JX3Cq~NBJW5sUCtXHswz6YFMgBJM6bVNAdOrgRdouZBo1kgEUfhxuWx26lgMXJ00fkaFveBaE7nH4JA819MlVGEhaabVOnh7MAyJkFBVRwCh2hQTmjzcYBUqhsvRfGETwc5NxhrlQ5v-j1t8IbpnO~jgiImQGHobRX-UxN0Wkl0nPbmNyStuxl0DOZpsInBO1HIE1jmaNnweUujtEDJJKU4rf5HyU7d9ikFCtceTGjujrAbEm8aa8E1UPitSEUWdQe7kHrMaY7GTcO-p87LQ__"

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Xenium Ranger 2.0.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Default nuclear expansion distance is 5 µm.
  • Enables reanalysis with multimodal cell segmentation algorithm.
  • Interrupted runs can be resumed.
Release Notes

Xenium Ranger 1.7.1 (Jan 23, 2024)

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    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: 51c373964e46c041e08ba73888657edd
    curl -o xeniumranger-1.7.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.gz?Expires=1762337398&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=mzvEPLX3i8Eoa6-QYl2mcTFypwFo14IQ24KprwqZc4AqyG1081p~MfoCHCOBQUo66I0IrA8mU9XeOrv2WXTA6xZAvsFNjz8KtNizIQ05Ca1sm6piGMH9EO7tlzkdG8UvfQMe9gBgCeCVaEZuHZvKRI-rNgUJvuGObGxZldnGTYVHEAeslVJmoaKntxW04NUAS-DUHoo1m2am3MFMI0Mqhlxz7GgtSVx~24zAJVgF2CJDmQ-tfTT1DrxXFHH~NdRNnqmC8g4SwChvCRUGcdDD18FMQazRHuyFYLTBokgyCzojxfquEU5hlM8xZvZm67AF5MkwTIof1QiVxTiEa0MJ~A__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 43e6e4433303aae30973682dc5219f20
    curl -o xeniumranger-1.7.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.xz?Expires=1762337398&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=VpUGs4sD4yfB4Wc1yKmy7W6aTyU6ksnXOuLNS6TrWNhhkzhvCgyaEFiyQ9dR8DkW0x31rGBFG93varQc9HCRDSFvS4lIEnpMOTnROmD3PzuCUiQAS~cxwbXcQYLs-fYwChIm-jXLaO-2dnlKjCtGQt7LyOHBSRp3981U-Vh~kuuOzqnB07cu4ChhfXssw5rXXzrzPFgRz7OSvyrNsyml7hSbD7XTG34UlFb3C~xWAOqR8Y69rxMeUDnLhMqKt9Lm-7FToyO89~jo1p9zY-esUWAfhG6-xDIDOAPpLtZRAJ88gTFqVBRazRF0uMbG-5Nkw7tibvFwVf7HOOk8P0KLqQ__"

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Xenium Ranger 1.7.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to latest version.
  • Image-based import-segmentation now compatible with segmentation masks.
  • Improved memory usage in the import-segmentation pipeline.
Release Notes

Xenium Ranger 1.6.0 (Aug 17, 2023)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: ebd970ceafc057668b9e664df310a5fb
    curl -o xeniumranger-1.6.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.gz?Expires=1762337398&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=GqR4irtyXx2iOGzt99fFcUQv-bGKo9dFwC7o-Z7hEDbAd8qSzbIL1RgIddPhTyBCzN3mnZYSGiiXHll0X-c0lNNsHoc9aYYO5fz0xtxmVYefqT4Ncg8hRr6MpVugoEhq2-0fJjqnytgPD5keS4wpSrOF9uPXAitJpk4Pt2-OqnPGGRjVQcswIHx39I-Z6ks2OFEbqEo7njqERry6ZVfSQt-LMaQDPYYww59E74cd7kJnnwl7e13wesan9CdoNDPqZ4DpioXq4kk7swmbeA-3yVhUrVAjZLo-VfrHmMcbfpZfcHCNaNs569-08hTbU-PWd~mwPfvJcYRTuKh9hoJrcA__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 6fa799cfeef91264fdc174ad43b6da3f
    curl -o xeniumranger-1.6.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.xz?Expires=1762337398&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=ksJSIi7H-87MhxvXC6pdRHBZqIlkcYZGk1Fw0GxwPNprDJpiGBhTrQv8mROwQLwkg-XjwwQRjyuvc9RcWmGVwi~b0fW2FMgb4Nr6WgWSIseutYOA9S2KQlayTZ-bQuF~wOVaNn7kqZ7OFqn6wevtWoEU7RoWwkX518n-2-lB6HcnrDVEs5JASrYYhIKY~topACKGXIJy5EA7hZf3gRFZ8gw-7AfiC5cUN9oMLIt73e2ovcr~YsYJJKeSnRRQ74Y9jE6X~i76nokKg3-HNRIw6XQmsPI31piLmTYpwLPAIkYRVg2UjIEGkWZ5ww0Oi561g0dtScnf2~87IOf~AWJoPg__"

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Xenium Ranger 1.6.0 highlights

  • Initial release of Xenium Ranger!
  • Resegment Xenium data with customizable nucleus expansion distance and the latest 10x cell segmentation algorithm.
  • Import community-developed nucleus and cell segmentations in multiple popular formats (i.e., Baysor).
  • Selected the wrong gene panel when you started the Xenium Analyzer run? Simply fix the mistake by using relabel.
  • All pipelines produce the same output bundle as Xenium Onboard Analysis v1.6, so they are compatible with the same downstream visualization and analysis softwares (e.g., Xenium Explorer).
  • Backwards compatible with all previous Xenium Onboard Analysis versions.
Release Notes